DY258526

Overview
NameDY258526
Unique NameDY258526
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1114
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258526 vs. ExPASy Swiss-Prot
Match: AT2C1_BOVIN (Calcium-transporting ATPase type 2C member 1 OS=Bos taurus GN=ATP2C1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.826e-11
Identity = 52/173 (30.06%), Postives = 84/173 (48.55%), Query Frame = 1
Query:  328 VEGVANALGTNPEYGINGNDEDVSRRSQLFGANTYHKPPPKGLLHFVLEAFKDTTILILLVCAALSLGFGIKEHGAEEGWYEGGSIFVAVFLVIVVSAFSNFRQARQFDKLSKISNNIKVEVVREARRLQISIFDLVVGDIVFLKIGDQIPADGLFLDGHSLQGDESSMTGES 846
            V  VA+ L  + + G+N  +  VS R    G N +     + L    +  FK+  I++LL  A +S+            + +  SI VA+ +V+ V+    +R  +  ++LSK+    +   VRE +       DLV GD V L +GD++PAD    +   L  DESS+TGE+
Sbjct:   65 VSEVASILQADLQNGLNKCE--VSHRRAFHGWNEFDISEDEPLWKKYISQFKNPLIMLLLASAVISV--------LMHQFDDAVSITVAILIVVTVAFVQEYRSEKSLEELSKLMPP-ECHCVREGKLEHTLARDLVPGDTVCLSVGDRVPADLRLFEAVDLSVDESSLTGET 226          
BLAST of DY258526 vs. ExPASy Swiss-Prot
Match: AT1A2_PONAB (Sodium/potassium-transporting ATPase subunit alpha-2 OS=Pongo abelii GN=ATP1A2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.826e-11
Identity = 59/192 (30.73%), Postives = 93/192 (48.44%), Query Frame = 1
Query:  298 DSHTLSL--LGGVEGVANALGTNPEYGINGNDEDVSRRSQLFGANTYHKPPPKG-LLHFVLEAFKDTTILILLVCAALSLGFGIKEHGAEEGWYEGGSIFVAVFL---VIVVSAFSNFRQARQFDKLSKISNNIKVE--VVREARRLQISIFDLVVGDIVFLKIGDQIPADGLFLDGHSLQGDESSMTGESD 849
            D H LSL  LG    V  + G       N   +DV  R    G N    PP     + F  + F   +IL+ +      L +GI+   A E      ++++ V L   VIV   FS +++A+    +    N +  +  V+RE  ++QI+  ++VVGD+V +K GD++PAD   +  H  + D SS+TGES+
Sbjct:   40 DDHKLSLDELGRKYQVDLSKGLT-----NQRAQDVLARD---GPNALTPPPTTPEWVKFCRQLFGGFSILLWIGAILCFLAYGIQ--AAMEDEPSNDNLYLGVVLAAVVIVTGCFSYYQEAKSSKIMDSFKNMVPQQALVIREGEKMQINAEEVVVGDLVEVKGGDRVPADLRIISSHGCKVDNSSLTGESE 221          
BLAST of DY258526 vs. ExPASy Swiss-Prot
Match: AT1A2_HUMAN (Sodium/potassium-transporting ATPase subunit alpha-2 OS=Homo sapiens GN=ATP1A2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.826e-11
Identity = 59/192 (30.73%), Postives = 93/192 (48.44%), Query Frame = 1
Query:  298 DSHTLSL--LGGVEGVANALGTNPEYGINGNDEDVSRRSQLFGANTYHKPPPKG-LLHFVLEAFKDTTILILLVCAALSLGFGIKEHGAEEGWYEGGSIFVAVFL---VIVVSAFSNFRQARQFDKLSKISNNIKVE--VVREARRLQISIFDLVVGDIVFLKIGDQIPADGLFLDGHSLQGDESSMTGESD 849
            D H LSL  LG    V  + G       N   +DV  R    G N    PP     + F  + F   +IL+ +      L +GI+   A E      ++++ V L   VIV   FS +++A+    +    N +  +  V+RE  ++QI+  ++VVGD+V +K GD++PAD   +  H  + D SS+TGES+
Sbjct:   40 DDHKLSLDELGRKYQVDLSKGLT-----NQRAQDVLARD---GPNALTPPPTTPEWVKFCRQLFGGFSILLWIGAILCFLAYGIQ--AAMEDEPSNDNLYLGVVLAAVVIVTGCFSYYQEAKSSKIMDSFKNMVPQQALVIREGEKMQINAEEVVVGDLVEVKGGDRVPADLRIISSHGCKVDNSSLTGESE 221          
BLAST of DY258526 vs. ExPASy Swiss-Prot
Match: ATC_ARTSF (Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 9.204e-11
Identity = 54/191 (28.27%), Postives = 88/191 (46.07%), Query Frame = 1
Query:  331 EGVANALGTNPEYGINGNDEDVSRRSQLFGANTYHKPPPKGLLHFVLEAFKDTTILILLVCAALSLGFGI-KEHGAEEGWYEGGSIFVAVFLVIVVSAFSNFRQARQFDKLSKISNNIKVEVVREARR-----LQISIFDLVVGDIVFLKIGDQIPADGLFLD--GHSLQGDESSMTGESDHVEVDSTNIP 879
            E V +  G +PE G+    E V +  + +G N       K LL  +LE F D  + ILL+ A +SL   + +EH  E            + L+++ +A     Q +  +   +     + E+ +  R       +I   DLV GDIV + +GD+IPAD   +     +L+ D+S +TGES  V   +  +P
Sbjct:   10 EEVVDYFGVDPERGLAL--EQVKKNQEKYGPNELPAEEGKSLLTLILEQFDDLLVKILLLAAIISLVLALFEEHDDEAEQLTAYVEPFVILLILIANAVVGVWQEKNAESAIEALKEYEPEMGKVIRADKTGIQKIKARDLVPGDIVEISVGDKIPADLRLISILSTTLRIDQSILTGESVSVIKHTDPVP 198          

HSP 2 Score: 24.2534 bits (51), Expect = 9.204e-11
Identity = 12/39 (30.77%), Postives = 20/39 (51.28%), Query Frame = 3
Query:  894 SRVADGYAQMLVVSVGINTCGGKMMNSISSEFHEKNPLQ 1010
            + V+ G A+ +V+  G+NT  G +   +      K PLQ
Sbjct:  215 TNVSAGKARGVVMGTGLNTAIGSIRTQMFETEEMKTPLQ 253          
The following BLAST results are available for this feature:
BLAST of DY258526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
AT2C1_BOVIN7.826e-1130.06Calcium-transporting ATPase type 2C member 1 OS=Bo... [more]
AT1A2_PONAB7.826e-1130.73Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A2_HUMAN7.826e-1130.73Sodium/potassium-transporting ATPase subunit alpha... [more]
ATC_ARTSF9.204e-1128.27Calcium-transporting ATPase sarcoplasmic/endoplasm... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AH09FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258526 ID=DY258526; Name=DY258526; organism=Citrus clementina; type=EST; length=1114bp
AAAATCCCACGTTATAATTGCAGCACATTGCTCATTAACGTCACCACCAG
CACCCTCACAAAAGCTCAGAAGCGATGGCGCCTTGCCTACTGGACAATCT
ATTCTTTCCGTGCTATGCTTTCTGTTCTACCCAAAGGCCGGCTTCTCTCA
GCCGAAATCCTGACAAGTCATGATTACATTGCCCTTGATGTTGAGCCTGA
GCCTAGCAGCTCTCATGATGAGGCAAATAAACTTGTTTCCAACTCCATTG
ATCCTGATATGGATGGAATAAGACTCGCCGAAATGGTGAAGAACAAAGAC
TCGCATACCCTCAGCCTTCTTGGAGGAGTTGAAGGCGTGGCCAACGCTCT
TGGGACAAATCCTGAATACGGAATCAATGGCAATGATGAAGATGTCAGTA
GGAGGTCTCAACTCTTTGGTGCTAACACTTATCATAAGCCACCTCCTAAA
GGGCTTTTACATTTCGTGCTGGAAGCTTTCAAAGACACCACCATTCTAAT
CCTTCTCGTATGCGCTGCCCTGTCTCTTGGTTTTGGCATCAAAGAACATG
GGGCAGAAGAAGGTTGGTATGAAGGCGGAAGTATCTTTGTAGCCGTCTTT
CTGGTTATTGTTGTCTCTGCTTTTAGTAACTTCAGACAGGCAAGACAGTT
TGACAAGCTATCAAAAATAAGTAACAACATCAAAGTTGAAGTTGTTAGAG
AAGCCCGGCGCTTGCAGATATCCATATTTGACCTTGTAGTTGGAGATATT
GTCTTCCTCAAAATTGGAGACCAAATTCCGGCTGATGGGTTGTTCTTGGA
CGGACATTCTTTGCAAGGTGATGAGTCAAGCATGACCGGAGAGAGTGACC
ATGTTGAAGTAGATTCAACGAATATCCCATTCTTGTTCTCCGGTCCAGGG
TGGCAGATGGGTATGCTCAAATGCTTGTGGTGTCCGTGGGGATAAATACC
TGCGGGGGAAAAATGATGAACTCAATATCAAGTGAATTCCATGAAAAAAA
TCCATTACAAGGTTCGGCCTGGCAAAATAACCCTCTACTAATGGAAAAAA
AAAGGCCTGGCAGTGGGCTTTCCTAAGGGCTTTTGATTTTTTTTTACCTC
CTTTTTTTTCCCGG
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