DY258536

Overview
NameDY258536
Unique NameDY258536
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1086
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258536 vs. ExPASy Swiss-Prot
Match: Y5815_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g58150 OS=Arabidopsis thaliana GN=At5g58150 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.337e-12
Identity = 56/225 (24.89%), Postives = 101/225 (44.89%), Query Frame = 3
Query:   93 DTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMXXXXXXXXXXXXXXXXXN--------VYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTL-SSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREIT 737
            + L+++NH N   L G+C   E   R+ ++E      L   +H    +   W +R +IA+G A  L  +H    PP+ H  + ++ + L      +L+D        + E                  N        VY+FGV+L E+V+G+ P     G L +W    +   Q L+  +DPT+  +  E+++ +  ++   C    P KRPTM+ +  +L++I+
Sbjct:  567 ERLARINHPNLFPLCGYCIATEQ--RIAIYEDLDMVNLQSLLHNNGDDSAPWRLRHKIALGTARALAFLHHGCIPPMVHGEVKAATILLDSSQEPRLADFGLVK--LLDEQFPGSESLDGYTPPEQERNASPTLESDVYSFGVVLLELVSGKKP----EGDLVNWVRGLVRQGQGLRA-IDPTMQETVPEDEIAEAVKIGYLCTADLPWKRPTMQQVVGLLKDIS 782          
BLAST of DY258536 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.337e-12
Identity = 68/242 (28.10%), Postives = 107/242 (44.21%), Query Frame = 3
Query:   75 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESE---HLDWGMRLRIAMGMAYCLEHMHQLNP-PIAHNYLNSSAVHLTEDYAAKLSD--LSFWNEIA--------MAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGR----LPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSS-FDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREITGI 743
            +F  +I  +S + H N V L G C E      ++V+EY  N  L   +  K+      LDW  R +I +G+A  L  +H+ +   I H  + +S V L +D  AK+SD  L+  N+             +                 +VY+FGV+  E+V+G+         D   L DWA   L     L + VDPTL+S + EE+   +  +   C  A P  RPTM  + +++   T +
Sbjct:  718 EFVNEIGMISALQHPNLVKLYGCCVEGNQL--ILVYEYLENNCLSRALFGKDESSRLKLDWSTRKKIFLGIAKGLTFLHEESRIKIVHRDIKASNVLLDKDLNAKISDFGLAKLNDDGNTHISTRIAGTIGYMAPEYAMRGYLTEKADVYSFGVVALEIVSGKSNTNFRPTEDFVYLLDWAY-VLQERGSLLELVDPTLASDYSEEEAMLMLNVALMCTNASPTLRPTMSQVVSLIEGKTAM 956          
BLAST of DY258536 vs. ExPASy Swiss-Prot
Match: PUB53_ARATH (Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.337e-12
Identity = 58/239 (24.27%), Postives = 108/239 (45.19%), Query Frame = 3
Query:   63 NLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI-HIKESEHLDWGMRLRIAMGMAYCLEHMHQLNP-PIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-----------------MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGR----LPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLEKLGELIKSCVRADPEKRPTMRD 710
            +L  QF ++++ LSK+ H + V L+G C    P    +V+EY  NG+L + +  + +S+ + W +RLRIA  +A  L  +H+  P PI H  L  + + L  ++ +K+ D+     I  A+                 +                 +VY FG+++ +++TG+    L Y V+  ++E+      +    L Q +D    ++  E+  +L  L   C     + RP + D
Sbjct:  495 SLSKQFDQELEILSKIRHPHLVLLLGAC----PDHGALVYEYMENGSLEDRLFQVNDSQPIPWFVRLRIAWEVASALVFLHKSKPTPIIHRDLKPANILLNHNFVSKVGDVGLSTMIQAADPLSTKFTMYKQTSPVGTLCYIDPEYQRTGRISPKSDVYAFGMIILQLLTGQQAMALTYTVET-AMEN------NNDDELIQILDEKAGNWPIEETRQLAALALQCTELRSKDRPDLED 722          
BLAST of DY258536 vs. ExPASy Swiss-Prot
Match: IRAK4_MOUSE (Interleukin-1 receptor-associated kinase 4 OS=Mus musculus GN=Irak4 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.337e-12
Identity = 53/240 (22.08%), Postives = 107/240 (44.58%), Query Frame = 3
Query:   60 KNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-IKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA----------MAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGS---LEDWAADYLSGVQPLQQFVDPTLSSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREIT 737
            + L+ QF ++I  ++   H+N V L+GF  + +     +V+ Y PNG+L + +  +  +  L W  R ++A G A  +  +H+ +    H  + S+ + L +D+ AK+SD       A          +                    ++Y+FGV+L E++TG L  + +N     L D   +     + ++ + D  +S  D   +E +      C+     +RP +  +  +L+E++
Sbjct:  224 EELKQQFDQEIKVMATCQHENLVELLGFSSDSD--NLCLVYAYMPNGSLLDRLSCLDGTPPLSWHTRCKVAQGTANGIRFLHENHH--IHRDIKSANILLDKDFTAKISDFGLARASARLAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLELITG-LAAVDENREPQLLLDIKEEIEDEEKTIEDYTDEKMSDADPASVEAMYSAASQCLHEKKNRRPDIAKVQQLLQEMS 458          
BLAST of DY258536 vs. ExPASy Swiss-Prot
Match: ILK_PONAB (Integrin-linked protein kinase OS=Pongo abelii GN=ILK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.052e-12
Identity = 58/236 (24.58%), Postives = 106/236 (44.92%), Query Frame = 3
Query:   48 KDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLS--DLSF-----WNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREI 734
            +DW       F ++   L   +H N + ++G C+        ++  + P G+L+  +H   +  +D    ++ A+ MA  +  +H L P I  + LNS +V + ED  A++S  D+ F         A A +                 ++++F VLL+E+VT  +P+  D  ++E      L G++P    + P +S         + +L+K C+  DP KRP    I  IL ++
Sbjct:  225 RDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQCPGRMYAPAWVAPEALQKKPEDTNIRSADMWSFAVLLWELVTREVPF-ADLSNMEIGMRVALEGLRPT---IPPGIS-------PHVCKLMKICMNEDPAKRPKFDMIVPILEKM 449          
BLAST of DY258536 vs. ExPASy Swiss-Prot
Match: ILK_HUMAN (Integrin-linked protein kinase OS=Homo sapiens GN=ILK PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 3.052e-12
Identity = 58/236 (24.58%), Postives = 106/236 (44.92%), Query Frame = 3
Query:   48 KDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLS--DLSF-----WNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREI 734
            +DW       F ++   L   +H N + ++G C+        ++  + P G+L+  +H   +  +D    ++ A+ MA  +  +H L P I  + LNS +V + ED  A++S  D+ F         A A +                 ++++F VLL+E+VT  +P+  D  ++E      L G++P    + P +S         + +L+K C+  DP KRP    I  IL ++
Sbjct:  225 RDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQCPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPF-ADLSNMEIGMKVALEGLRPT---IPPGIS-------PHVCKLMKICMNEDPAKRPKFDMIVPILEKM 449          
BLAST of DY258536 vs. ExPASy Swiss-Prot
Match: ILK_BOVIN (Integrin-linked protein kinase OS=Bos taurus GN=ILK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.052e-12
Identity = 58/236 (24.58%), Postives = 106/236 (44.92%), Query Frame = 3
Query:   48 KDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLS--DLSF-----WNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREI 734
            +DW       F ++   L   +H N + ++G C+        ++  + P G+L+  +H   +  +D    ++ A+ MA  +  +H L P I  + LNS +V + ED  A++S  D+ F         A A +                 ++++F VLL+E+VT  +P+  D  ++E      L G++P    + P +S         + +L+K C+  DP KRP    I  IL ++
Sbjct:  225 RDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQCPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPF-ADLSNMEIGMKVALEGLRPT---IPPGIS-------PHVCKLMKICMNEDPAKRPKFDMIVPILEKM 449          
BLAST of DY258536 vs. ExPASy Swiss-Prot
Match: BRL2_ARATH (Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.052e-12
Identity = 68/257 (26.46%), Postives = 111/257 (43.19%), Query Frame = 3
Query:   75 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH----IKESEHLDWGMRLRIAMGMA--YCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-----------XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVD---NGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQL-EKLG--------------ELIKSCVRADPEKRPTMRDIAAILREITG 740
            +F  +++TL K+ H+N V L+G+C+  E   R++V+E+   G+L E +H     ++   L W  R +IA G A   C  H H   P I H  + SS V L +D  A++SD      I+  +                             +VY+ GV++ E+++G+ P   +   + +L  W+       + ++   +  L     E L EK G              E+   CV   P KRP M  + A LRE+ G
Sbjct:  878 EFMAEMETLGKIKHRNLVPLLGYCKIGE--ERLLVYEFMQYGSLEEVLHGPRTGEKRRILGWEERKKIAKGAAKGLCFLH-HNCIPHIIHRDMKSSNVLLDQDMEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSIGVVMLEILSGKRPTDKEEFGDTNLVGWSKMKAREGKHMEVIDEDLLKEGSSESLNEKEGFEGGVIVKEMLRYLEIALRCVDDFPSKRPNMLQVVASLRELRG 1131          
BLAST of DY258536 vs. ExPASy Swiss-Prot
Match: ILK_RAT (Integrin-linked protein kinase OS=Rattus norvegicus GN=Ilk PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.986e-12
Identity = 58/236 (24.58%), Postives = 106/236 (44.92%), Query Frame = 3
Query:   48 KDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLS--DLSF-----WNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREI 734
            +DW       F ++   L   +H N + ++G C+        ++  + P G+L+  +H   +  +D    ++ A+ MA  +  +H L P I  + LNS +V + ED  A++S  D+ F         A A +                 ++++F VLL+E+VT  +P+  D  ++E      L G++P    + P +S         + +L+K C+  DP KRP    I  IL ++
Sbjct:  225 RDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQAPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQCPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPF-ADLSNMEIGMKVALEGLRPT---IPPGIS-------PHVCKLMKICMNEDPAKRPKFDMIVPILEKM 449          
BLAST of DY258536 vs. ExPASy Swiss-Prot
Match: ILK_MOUSE (Integrin-linked protein kinase OS=Mus musculus GN=Ilk PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.986e-12
Identity = 58/236 (24.58%), Postives = 106/236 (44.92%), Query Frame = 3
Query:   48 KDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLS--DLSF-----WNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREI 734
            +DW       F ++   L   +H N + ++G C+        ++  + P G+L+  +H   +  +D    ++ A+ MA  +  +H L P I  + LNS +V + ED  A++S  D+ F         A A +                 ++++F VLL+E+VT  +P+  D  ++E      L G++P    + P +S         + +L+K C+  DP KRP    I  IL ++
Sbjct:  225 RDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQAPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQCPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPF-ADLSNMEIGMKVALEGLRPT---IPPGIS-------PHVCKLMKICMNEDPAKRPKFDMIVPILEKM 449          
The following BLAST results are available for this feature:
BLAST of DY258536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
Y5815_ARATH2.337e-1224.89Probably inactive leucine-rich repeat receptor-lik... [more]
Y1765_ARATH2.337e-1228.10Probable LRR receptor-like serine/threonine-protei... [more]
PUB53_ARATH2.337e-1224.27Putative U-box domain-containing protein 53 OS=Ara... [more]
IRAK4_MOUSE2.337e-1222.08Interleukin-1 receptor-associated kinase 4 OS=Mus ... [more]
ILK_PONAB3.052e-1224.58Integrin-linked protein kinase OS=Pongo abelii GN=... [more]
ILK_HUMAN3.052e-1224.58Integrin-linked protein kinase OS=Homo sapiens GN=... [more]
ILK_BOVIN3.052e-1224.58Integrin-linked protein kinase OS=Bos taurus GN=IL... [more]
BRL2_ARATH3.052e-1226.46Serine/threonine-protein kinase BRI1-like 2 OS=Ara... [more]
ILK_RAT3.986e-1224.58Integrin-linked protein kinase OS=Rattus norvegicu... [more]
ILK_MOUSE3.986e-1224.58Integrin-linked protein kinase OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BB02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258536 ID=DY258536; Name=DY258536; organism=Citrus clementina; type=EST; length=1086bp
CTAATGGAGTTGAAATAGCTGTGGCCTCTGTCTCAGTGGCATCTGCCAAG
GATTGGCCTAAGAACTTAGAAGTGCAGTTTAGGAAGAAGATTGACACGTT
ATCAAAAGTGAACCACAAAAATTTTGTCAATCTTATTGGATTTTGTGAAG
AAGAGGAGCCTTTCACCAGAATGATGGTGTTTGAATATGCTCCTAATGGA
ACACTCTTTGAGCATATACACATTAAAGAATCAGAGCATTTGGACTGGGG
AATGAGGTTGCGGATTGCAATGGGTATGGCTTACTGCCTAGAGCATATGC
ATCAGCTGAACCCACCCATAGCCCACAATTACTTGAACTCTTCAGCTGTC
CATCTGACTGAGGACTATGCAGCCAAATTATCAGACTTAAGCTTCTGGAA
TGAGATAGCCATGGCTGAAATGGCAGCAACTAGCAAAAAACTTTCAAGTG
CACCCTCAGCAAGCCTTGAAAGCAACGTGTACAACTTTGGAGTATTATTA
TTTGAAATGGTAACGGGTAGGCTCCCTTATTTGGTGGACAACGGCTCTCT
AGAAGACTGGGCAGCTGATTATTTGAGTGGAGTGCAACCCCTTCAACAAT
TTGTTGATCCAACTTTAAGCTCTTTTGATGAGGAGCAGCTAGAGAAACTT
GGTGAACTGATAAAATCTTGTGTCCGCGCCGACCCAGAAAAAAGACCGAC
AATGAGAGACATTGCCGCAATATTGAGAGAGATAACCGGAATAACACCAG
ATGGAGCAATCCCAAAACTTTCCCCTCTTTGGTGGGCAGAGATTGAGATT
TTATCTACAGAGGCCATCTAGATTATGAATTTTGGATTGCAAGTATGAAA
AGCTTCAAATTTACCATGTTTTCTAGTTTGGTTAAGCAAAAAAAAAAAAT
CATTGCCTTTTGGTTTCATTACTTTGTGTATAGGTTGATGGAATTGGCAA
AGTATATAAATAAAATCCAAAGATAGTTGGGAAATTCCGGGAATATTTTC
TTTTGTTTTTTGCTTTTCCTTTTAAAAAAAATTTGTGGGGGTGACGGGGG
TGGGAAAAATGCCTACGAAATAAACCCCAAAGGGGG
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