DY258549

Overview
NameDY258549
Unique NameDY258549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1270
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_HUMAN (ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3)

HSP 1 Score: 219.55 bits (558), Expect = 3.260e-56
Identity = 115/183 (62.84%), Postives = 133/183 (72.68%), Query Frame = 1
Query:  289 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            G++  VIGAVVDV+FDEGLPPIL ALEV+    RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMN IGEPIDE+G +KT+ + PIH EAP F+E + EQ+ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:   61 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 243          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPBM_CHLRE (ATP synthase subunit beta, mitochondrial OS=Chlamydomonas reinhardtii GN=ATP2 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 9.484e-56
Identity = 124/209 (59.33%), Postives = 141/209 (67.46%), Query Frame = 1
Query:  289 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREGKMTCNGK*LKRGVISKGKRRLKIKRG 915
            G V QVIG VVDVRFD  LP IL+ALEV+ H+VRLVLEVAQHMG+  VR +AMD T+GLVRGQ+V+NTGSPI VPVGR TLGRIMN IGEP+DE+G ++      IHREAP F EQ+TEQ+ILVTGIKV DLL PYQ+             K   I E   NVAK  G F VFAG GE  REG        L R +I  G  +L  KRG
Sbjct:   38 GFVSQVIGPVVDVRFDGELPSILSALEVQGHNVRLVLEVAQHMGDNTVRCVAMDSTDGLVRGQKVVNTGSPIKVPVGRGTLGRIMNVIGEPVDEQGPIECSEVWSIHREAPEFTEQSTEQEILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGND------LYREMIESGVIKLGDKRG 240          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_BOVIN (ATP synthase subunit beta, mitochondrial OS=Bos taurus GN=ATP5B PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 1.239e-55
Identity = 115/183 (62.84%), Postives = 132/183 (72.13%), Query Frame = 1
Query:  289 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            G++  VIGAVVDV+FDEGLPPIL ALEV+    RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMN IGEPIDE+G +KT+ +  IH EAP FVE + EQ+ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:   61 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 243          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_CHICK (ATP synthase subunit beta, mitochondrial OS=Gallus gallus GN=ATP5B PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 8.028e-55
Identity = 114/183 (62.30%), Postives = 131/183 (71.58%), Query Frame = 1
Query:  289 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            G++  VIGAVVDV+FDEGLPPIL ALEV+    RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMN IGEPIDE+G + T+ +  IH EAP FVE + EQ+ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:   66 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPITTKQFAAIHAEAPEFVEMSVEQKILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 248          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_DROVI (ATP synthase subunit beta, mitochondrial (Fragment) OS=Drosophila virilis GN=ATPsyn-beta PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.789e-54
Identity = 115/183 (62.84%), Postives = 131/183 (71.58%), Query Frame = 1
Query:  289 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            G++  VIGAVVDV+FD+ LPPIL ALEV++ S RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL+TGSPI +PVG  TLGRIMN IGEPIDE+G + +    PIH EAP FV+ + EQ+ILVTGIKV DLL PY K             K   I E   NVAK  G F VFAG GE  REG
Sbjct:   38 GKIVAVIGAVVDVQFDDNLPPILNALEVDNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGSPIRIPVGAETLGRIMNVIGEPIDERGPIPSAKTSPIHAEAPEFVDMSVEQEILVTGIKVVDLLAPYCKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 220          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RHIME (ATP synthase subunit beta OS=Rhizobium meliloti GN=atpD PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 4.020e-54
Identity = 116/187 (62.03%), Postives = 133/187 (71.12%), Query Frame = 1
Query:  280 GSIGQVCQVIGAVVDVRFDEG-LPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            G++G+V QVIGAVVDV F+EG LP IL ALE +++  RLVLEVAQH+GE  VRTIAMD TEGLVRGQ+V +TG PI VPVG+ TLGRIMN IGEP+DE G LKT     IH+EAPA+V+Q+TE QILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:   33 GAVGRVTQVIGAVVDVAFEEGQLPQILNALETDNNGNRLVLEVAQHLGENSVRTIAMDSTEGLVRGQKVADTGGPIAVPVGKETLGRIMNVIGEPVDEAGPLKTSARRAIHQEAPAYVDQSTEAQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 219          

HSP 2 Score: 23.483 bits (49), Expect = 4.020e-54
Identity = 20/46 (43.48%), Postives = 21/46 (45.65%), Query Frame = 3
Query:  840 NDL*REMIEEGCYK*GEKKAENQKGDLVRTKGMTPLLARAWGGLDG 977
            NDL  EMIE G  K G    E  K  LV  +   P  ARA   L G
Sbjct:  220 NDLYHEMIESGVNKHG--GGEGSKAALVYGQMNEPPGARARVALTG 263          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_SINMW (ATP synthase subunit beta OS=Sinorhizobium medicae (strain WSM419) GN=atpD PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 5.240e-54
Identity = 119/205 (58.05%), Postives = 138/205 (67.32%), Query Frame = 1
Query:  235 KKGGGGKITDEFT---GKGSIGQVCQVIGAVVDVRFDEG-LPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            KK    K     T     G++G+V QVIGAVVDV F+EG LP IL ALE +++  RLVLEVAQH+GE  VRTIAMD TEGLVRGQ+V +TG+PI VPVG+ TLGRIMN IGEP+DE G LKT     IH++APA+V+Q+TE QILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:   20 KKAASAKTASATTVVAATGAVGRVTQVIGAVVDVAFEEGQLPKILNALETDNNGNRLVLEVAQHLGENSVRTIAMDSTEGLVRGQKVTDTGAPIAVPVGKETLGRIMNVIGEPVDEAGPLKTSARRAIHQDAPAYVDQSTEAQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 224          

HSP 2 Score: 23.483 bits (49), Expect = 5.240e-54
Identity = 20/46 (43.48%), Postives = 21/46 (45.65%), Query Frame = 3
Query:  840 NDL*REMIEEGCYK*GEKKAENQKGDLVRTKGMTPLLARAWGGLDG 977
            NDL  EMIE G  K G    E  K  LV  +   P  ARA   L G
Sbjct:  225 NDLYHEMIESGVNKHG--GGEGSKAALVYGQMNEPPGARARVALTG 268          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_DROME (ATP synthase subunit beta, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-beta PE=1 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 6.796e-54
Identity = 118/206 (57.28%), Postives = 141/206 (68.45%), Query Frame = 1
Query:  289 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREGKMTCNGK*LKRGVISKGKRRLKI 906
            G++  VIGAVVDV+FD+ LPPIL ALEV++ S RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL+TG PI +PVG  TLGRI+N IGEPIDE+G + T+    IH EAP FV+ + EQ+ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG    N + ++ GVIS   +  K+
Sbjct:   38 GKIVAVIGAVVDVQFDDNLPPILNALEVDNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPIRIPVGAETLGRIINVIGEPIDERGPIDTDKTAAIHAEAPEFVQMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYN-EMIEGGVISLKDKTSKV 242          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_CYPCA (ATP synthase subunit beta, mitochondrial OS=Cyprinus carpio GN=atp5b PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 8.876e-54
Identity = 113/183 (61.75%), Postives = 128/183 (69.95%), Query Frame = 1
Query:  289 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            G++  VIGAVVDV+FDE LPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL+TG+PI +PVG  TLGRIMN IGEPIDE+G + T+   PIH EAP F + + EQ+ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:   51 GRIVAVIGAVVDVQFDEDLPPILNALEVAGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGAPIRIPVGPETLGRIMNVIGEPIDERGPITTKQTAPIHAEAPEFTDMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 233          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RHISN (ATP synthase subunit beta OS=Rhizobium sp. (strain NGR234) GN=atpD PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.973e-53
Identity = 118/202 (58.42%), Postives = 136/202 (67.33%), Query Frame = 1
Query:  235 KKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEG-LPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            KK    K T      G++G+V QVIGAVVDV F+EG LP IL ALE ++   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG PI+VPVG+ TLGRIMN IGEP+DE G ++T     IH++APA+VEQ+TE QILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:   20 KKAATAKTT-AVVATGAVGRVTQVIGAVVDVAFEEGQLPQILNALETDNKGNRLVLEVAQHLGENAVRTIAMDSTEGLVRGQSVTDTGGPISVPVGKETLGRIMNVIGEPVDEAGPVETSSRRAIHQDAPAYVEQSTEAQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 220          

HSP 2 Score: 23.483 bits (49), Expect = 1.973e-53
Identity = 20/46 (43.48%), Postives = 21/46 (45.65%), Query Frame = 3
Query:  840 NDL*REMIEEGCYK*GEKKAENQKGDLVRTKGMTPLLARAWGGLDG 977
            NDL  EMIE G  K G    E  K  LV  +   P  ARA   L G
Sbjct:  221 NDLYHEMIESGVNKHG--GGEGSKAALVYGQMNEPPGARARVALTG 264          
The following BLAST results are available for this feature:
BLAST of DY258549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_HUMAN3.260e-5662.84ATP synthase subunit beta, mitochondrial OS=Homo s... [more]
ATPBM_CHLRE9.484e-5659.33ATP synthase subunit beta, mitochondrial OS=Chlamy... [more]
ATPB_BOVIN1.239e-5562.84ATP synthase subunit beta, mitochondrial OS=Bos ta... [more]
ATPB_CHICK8.028e-5562.30ATP synthase subunit beta, mitochondrial OS=Gallus... [more]
ATPB_DROVI1.789e-5462.84ATP synthase subunit beta, mitochondrial (Fragment... [more]
ATPB_RHIME4.020e-5462.03ATP synthase subunit beta OS=Rhizobium meliloti GN... [more]
ATPB_SINMW5.240e-5458.05ATP synthase subunit beta OS=Sinorhizobium medicae... [more]
ATPB_DROME6.796e-5457.28ATP synthase subunit beta, mitochondrial OS=Drosop... [more]
ATPB_CYPCA8.876e-5461.75ATP synthase subunit beta, mitochondrial OS=Cyprin... [more]
ATPB_RHISN1.973e-5358.42ATP synthase subunit beta OS=Rhizobium sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258549 ID=DY258549; Name=DY258549; organism=Citrus clementina; type=EST; length=1270bp
GTCTCGCGGCATCCATATCCGTGACCAATGGCTTCACGTAGACTCCTAAC
ATCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTT
CTAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTAT
GGGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCAC
TGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTG
GTAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGT
CAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCC
GATTTTGACCGCGCTTGAAGTGGAAGATCACTCGGTTCGGTTAGTGCTTG
AGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGAT
GGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCC
AATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGACA
TTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTG
CCCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACA
GATTCTAGTCACTGGCATCAAGGTCGATGATCTCCTTGGTCCATACCAAA
AAGGAGGGAAAAATGGGCATTTTGGGGGTGCTGGTGAAAGAAAAATAGAG
CCTATCAATGAAACTAATAAAAATGTTGCAAAAGTCCGGGGGGTTTTCCT
AGTTTTTGCCGGGGGTGGAGAGCCTAACCGTGAAGGGAAAATGACCTGTA
ACGGGAAATGATTGAAGAGGGGTGTTATAAGTAAGGGGAAAAGAAGGCTG
AAAATCAAAAGGGGGACTTGGTCAGGACCAAAGGAATGACCCCCCTGTTG
GCTCGGGCCTGGGGGGGCCTAGACGGGCCTAACGGGTGCCCGAGCCCTTC
CGGGAAAGTCTGAGGGGGGAGAAAAAGGCTTCGCTCTCTTCTCCCAAACA
TTTTCCCCTTTCACCCCAACCCAAATCCCAAAAGGGGGCCTGGCTTGGTT
GGGGGGCCGAATCTCCCTCCCGTGGGGGGGGGTACCCCAACCCCCCGCGT
TCGGGTGACGCGGGATATCTGGGGGGGCCCTCCCCCCGCAAGAAGGAGTC
ACCACACACCCCACCACAAGGAAAAAGGGGGGTCTCCACCTCCGCACCTT
CTTTCCGCGTCACTCAAACA
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