DY258549

Overview
NameDY258549
Unique NameDY258549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1270
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_MARMM (ATP synthase subunit beta OS=Maricaulis maris (strain MCS10) GN=atpD PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 3.738e-44
Identity = 102/185 (55.14%), Postives = 117/185 (63.24%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            S G++ Q+ GAVVDV FD  LP IL ALE  +    L LEVAQH+GE  VRTIAMD TEGL RG  V +TG PI VPVG  TLGRIM+  G+PIDE GD+      PIHR AP+F EQATE ++L TGIKV DLL PY K             K   I E   N+AK+ G + VFAG GE  REG
Sbjct:    4 SQGRIVQITGAVVDVEFDGTLPDILNALETTNDDKTLTLEVAQHLGENTVRTIAMDATEGLQRGTVVTDTGGPIMVPVGPGTLGRIMSVTGQPIDEAGDVPHTMKAPIHRPAPSFDEQATEAEVLPTGIKVVDLLCPYAKGGKIGLFGGAGVGKTVLIQELINNIAKLFGGYSVFAGVGERTREG 188          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RICBR (ATP synthase subunit beta OS=Rickettsia bellii (strain RML369-C) GN=atpD PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 4.882e-44
Identity = 99/189 (52.38%), Postives = 124/189 (65.61%), Query Frame = 1
Query:  277 KGSIGQVCQVIGAVVDVRFDEG--LPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            K +IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLE+AQH+G+  VR IAM+ TEGLVRG  V++TGSPI++PVG  TLGRIMN +GEPID KG +K      I++ AP+F +Q+T++ ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    2 KKNIGKITQIISAVVDVKFTNKGKLPQILNALECYNDKQRIVLEIAQHIGDDTVRCIAMNSTEGLVRGMEVVDTGSPISIPVGIETLGRIMNVVGEPIDGKGKIKGSSISSIYKSAPSFTQQSTDRNILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREG 190          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RICB8 (ATP synthase subunit beta OS=Rickettsia bellii (strain OSU 85-389) GN=atpD PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 4.882e-44
Identity = 99/189 (52.38%), Postives = 124/189 (65.61%), Query Frame = 1
Query:  277 KGSIGQVCQVIGAVVDVRFDEG--LPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            K +IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLE+AQH+G+  VR IAM+ TEGLVRG  V++TGSPI++PVG  TLGRIMN +GEPID KG +K      I++ AP+F +Q+T++ ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    2 KKNIGKITQIISAVVDVKFTNKGKLPQILNALECYNDKQRIVLEIAQHIGDDTVRCIAMNSTEGLVRGMEVVDTGSPISIPVGIETLGRIMNVVGEPIDGKGKIKGSSISSIYKSAPSFTQQSTDRNILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREG 190          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_GLUDA (ATP synthase subunit beta OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=atpD PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.380e-44
Identity = 101/184 (54.89%), Postives = 120/184 (65.22%), Query Frame = 1
Query:  286 IGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +G+V QV GAVVDV+F+  LP IL AL V  +   +VLEVAQ +GE  VR IAMD T+GL+RG  V+ TG  ITVPVG  TLGRI+N IGEPIDE+G +K++   PIHR+AP+F EQA   +ILVTGIKV DLL PY K             K   I E   N+AK  G   VFAG GE  REG
Sbjct:   23 VGRVTQVRGAVVDVQFEGTLPHILDALHVTFNGQTVVLEVAQEIGEHEVRCIAMDTTDGLMRGTEVVATGGQITVPVGPGTLGRILNVIGEPIDERGPVKSDKRYPIHRKAPSFDEQAAATEILVTGIKVVDLLCPYLKGGKVGLFGGAGVGKTVIIQELINNIAKAHGGVSVFAGVGERTREG 206          

HSP 2 Score: 24.6386 bits (52), Expect = 5.380e-44
Identity = 19/46 (41.30%), Postives = 21/46 (45.65%), Query Frame = 3
Query:  840 NDL*REMIEEGCYK*GEKKAENQKGDLVRTKGMTPLLARAWGGLDG 977
            NDL  EM + G  K GE   E  K  LV  +   P  ARA   L G
Sbjct:  207 NDLYYEMQDAGVIKLGEDTTEGSKVALVYGQMNEPPGARARIALSG 252          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_GEOBB (ATP synthase subunit beta OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=atpD PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 6.376e-44
Identity = 101/191 (52.88%), Postives = 121/191 (63.35%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----EDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            + G++ QVIGAV+DV F+ G LPPI  AL V     +D    LVLEVAQH+GE  VRTIAMD T+GLVRGQ+V + G  I+VPVG+ TLGRI+N IGEP+DE G +  E    IHREAP FV Q+T+ +   TGIKV DLL PY +             K   I E   N+AK  G F VFAG GE  REG
Sbjct:    4 NFGKISQVIGAVIDVEFEPGKLPPIYQALRVTNPAIDDQEFNLVLEVAQHLGENAVRTIAMDSTDGLVRGQQVKDMGKQISVPVGKKTLGRILNVIGEPVDEMGPIGNEKEYGIHREAPLFVNQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAKQHGGFSVFAGVGERTREG 194          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_ACICJ (ATP synthase subunit beta OS=Acidiphilium cryptum (strain JF-5) GN=atpD PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.088e-43
Identity = 109/219 (49.77%), Postives = 128/219 (58.45%), Query Frame = 1
Query:  277 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREGKMTCNGK*LKRGVISKGKRRLKIKRGTWSGPK 933
            K   G++ Q++G VVDV+F+  LP IL ALE      RLVLEVAQ +GE  VR IAMD T+GL RG  V +TG  I VPVG  TLGRI+N IGEPIDE+G + T    PIHR+AP+F EQAT  +ILVTGIKV DLL PY K             K   I E   N+AK  G   VFAG GE  REG        L   +I  G   +K+  GT  G K
Sbjct:    3 KNVTGRITQIMGPVVDVQFEGELPYILNALETRVGDRRLVLEVAQEIGERTVRCIAMDSTDGLARGDEVRDTGEAIAVPVGPETLGRILNVIGEPIDERGPIPTTRTAPIHRQAPSFDEQATSAEILVTGIKVVDLLAPYLKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGVSVFAGVGERTREGND------LYHEMIDAGV--IKLGEGTTEGSK 213          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RICCK (ATP synthase subunit beta OS=Rickettsia canadensis (strain McKiel) GN=atpD PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.420e-43
Identity = 98/187 (52.41%), Postives = 122/187 (65.24%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG++ Q+I AVVDV+F     LP IL ALE    + R+VLEV QH+G+  VR IAMD TEGLVRG  V++TGSPI +PVG  TLGRIMN +GE ID KG++K+ +   I++ AP+F  Q++E+ ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    4 NIGKITQIISAVVDVKFTNNSKLPAILNALECYSDNQRIVLEVVQHIGDDTVRCIAMDSTEGLVRGLEVVDTGSPICIPVGTATLGRIMNVVGESIDGKGEIKSSNVSSIYKPAPSFTNQSSERTILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREG 190          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_DESDA (ATP synthase subunit beta OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=atpD PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.855e-43
Identity = 98/190 (51.58%), Postives = 124/190 (65.26%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVED----HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG++ QVIGAVVDV F +G LP I TALE+++     +  L+ EVAQH+G+ VVRTIAMD TEGLVRG   ++TG PI VPVG+ ++GRI+N IG P+DE G +  E Y PIHR APAF +Q T+ ++L TGIKV DLL P+ K             K   + E   N+AK  G   VFAG GE  REG
Sbjct:    4 NIGKIVQVIGAVVDVEFSDGNLPNIFTALEIKNPNNTDAPELICEVAQHLGDNVVRTIAMDATEGLVRGMDAVDTGQPIMVPVGKPSVGRILNVIGRPVDEMGPINAEKYYPIHRPAPAFTDQNTKVELLETGIKVVDLLVPFPKGGKMGLFGGAGVGKTVILMEMINNIAKQHGGSSVFAGVGERTREG 193          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RICTY (ATP synthase subunit beta OS=Rickettsia typhi GN=atpD PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 2.423e-43
Identity = 98/187 (52.41%), Postives = 122/187 (65.24%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG++ QVI AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR I+M  TEGL+RG  V++TG+PI +PVG  TLGRIMN +GEPID KG++K+     I++ AP F+ Q+TE+ ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    4 NIGKITQVISAVVDVKFTNNSKLPEILNALECYNAKQRIVLEVAQHIGDDTVRCISMGSTEGLIRGLEVIDTGNPIHIPVGIATLGRIMNVVGEPIDGKGEIKSSTISSIYKPAPDFINQSTERDILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREG 190          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_STIAU (ATP synthase subunit beta OS=Stigmatella aurantiaca GN=atpD PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.164e-43
Identity = 98/191 (51.31%), Postives = 122/191 (63.87%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVEDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            ++G++ QV+G V+DV F  G LP + TAL+V + S+      L +EVAQH+GE +VR I+MD TEGL RGQ V NTG+PI VPVG+ TLGRI+N IGEP+DE+G + +    PIHR AP FV+Q    Q   TGIKV DLLGPY +             K   + E   NVAK RG F VFAG GE  REG
Sbjct:    7 TVGKITQVLGPVIDVEFPPGGLPEVYTALKVTNTSISAEADNLTIEVAQHLGENMVRCISMDSTEGLARGQAVKNTGAPIQVPVGQGTLGRILNVIGEPVDERGPITSSQTWPIHRPAPTFVDQDVRVQAFETGIKVIDLLGPYTRGGKIGLFGGAGVGKTVLLMELIVNVAKERGGFSVFAGVGERTREG 197          
The following BLAST results are available for this feature:
BLAST of DY258549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_MARMM3.738e-4455.14ATP synthase subunit beta OS=Maricaulis maris (str... [more]
ATPB_RICBR4.882e-4452.38ATP synthase subunit beta OS=Rickettsia bellii (st... [more]
ATPB_RICB84.882e-4452.38ATP synthase subunit beta OS=Rickettsia bellii (st... [more]
ATPB_GLUDA5.380e-4454.89ATP synthase subunit beta OS=Gluconacetobacter dia... [more]
ATPB_GEOBB6.376e-4452.88ATP synthase subunit beta OS=Geobacter bemidjiensi... [more]
ATPB_ACICJ1.088e-4349.77ATP synthase subunit beta OS=Acidiphilium cryptum ... [more]
ATPB_RICCK1.420e-4352.41ATP synthase subunit beta OS=Rickettsia canadensis... [more]
ATPB_DESDA1.855e-4351.58ATP synthase subunit beta OS=Desulfovibrio desulfu... [more]
ATPB_RICTY2.423e-4352.41ATP synthase subunit beta OS=Rickettsia typhi GN=a... [more]
ATPB_STIAU3.164e-4351.31ATP synthase subunit beta OS=Stigmatella aurantiac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258549 ID=DY258549; Name=DY258549; organism=Citrus clementina; type=EST; length=1270bp
GTCTCGCGGCATCCATATCCGTGACCAATGGCTTCACGTAGACTCCTAAC
ATCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTT
CTAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTAT
GGGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCAC
TGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTG
GTAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGT
CAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCC
GATTTTGACCGCGCTTGAAGTGGAAGATCACTCGGTTCGGTTAGTGCTTG
AGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGAT
GGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCC
AATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGACA
TTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTG
CCCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACA
GATTCTAGTCACTGGCATCAAGGTCGATGATCTCCTTGGTCCATACCAAA
AAGGAGGGAAAAATGGGCATTTTGGGGGTGCTGGTGAAAGAAAAATAGAG
CCTATCAATGAAACTAATAAAAATGTTGCAAAAGTCCGGGGGGTTTTCCT
AGTTTTTGCCGGGGGTGGAGAGCCTAACCGTGAAGGGAAAATGACCTGTA
ACGGGAAATGATTGAAGAGGGGTGTTATAAGTAAGGGGAAAAGAAGGCTG
AAAATCAAAAGGGGGACTTGGTCAGGACCAAAGGAATGACCCCCCTGTTG
GCTCGGGCCTGGGGGGGCCTAGACGGGCCTAACGGGTGCCCGAGCCCTTC
CGGGAAAGTCTGAGGGGGGAGAAAAAGGCTTCGCTCTCTTCTCCCAAACA
TTTTCCCCTTTCACCCCAACCCAAATCCCAAAAGGGGGCCTGGCTTGGTT
GGGGGGCCGAATCTCCCTCCCGTGGGGGGGGGTACCCCAACCCCCCGCGT
TCGGGTGACGCGGGATATCTGGGGGGGCCCTCCCCCCGCAAGAAGGAGTC
ACCACACACCCCACCACAAGGAAAAAGGGGGGTCTCCACCTCCGCACCTT
CTTTCCGCGTCACTCAAACA
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