DY258549

Overview
NameDY258549
Unique NameDY258549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1270
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_CAUSK (ATP synthase subunit beta OS=Caulobacter sp. (strain K31) GN=atpD PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.164e-43
Identity = 100/191 (52.36%), Postives = 120/191 (62.83%), Query Frame = 1
Query:  271 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            T +   G++ QVIGAVVDV F   LP IL ALE  + +   RLV EVAQH+G+  VR IAMD TEGLVRGQ V +TG  I VPVG  TLGRIMN IGEPIDE+G +K++ +  IHR+AP F EQ    ++LVTGIKV DL+ PY K             K   + E   N+AK  G + V AG GE  REG
Sbjct:   63 TIRAGTGKLVQVIGAVVDVEFTGELPAILNALETVNIATGQRLVFEVAQHLGQNTVRAIAMDATEGLVRGQEVRDTGQSIRVPVGPGTLGRIMNVIGEPIDEQGPIKSDIFRTIHRDAPTFAEQTNTAEVLVTGIKVIDLMCPYTKGGKIGLFGGAGVGKTVTMQELINNIAKAYGGYSVLAGVGERTREG 253          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_LAWIP (ATP synthase subunit beta OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=atpD PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 5.398e-43
Identity = 98/190 (51.58%), Postives = 125/190 (65.79%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVED----HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG++ QVIGAVVDV F  G LPPILTALE+ +     + +L+ EVAQH+G+ +VRTIAMD TEGL RG  VL+TG PI  PVG+ +LGRIMN +G+PID  G + T+ YLPIHR+ P+F++Q T  + L TGIKV DLL P+ K             K   + E   N+A+  G   VFAG GE  REG
Sbjct:    4 NIGKIVQVIGAVVDVSFPNGKLPPILTALEIHNPNSIDAPKLICEVAQHLGDDIVRTIAMDATEGLKRGMDVLDTGHPIMAPVGKASLGRIMNVVGQPIDGLGVIDTKTYLPIHRKPPSFLDQNTSVEPLETGIKVIDLLVPFPKGGKMGLFGGAGVGKTVILMEMINNIARQHGGISVFAGVGERTREG 193          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_PROMO (ATP synthase subunit beta, sodium ion specific OS=Propionigenium modestum GN=atpD PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 7.050e-43
Identity = 97/200 (48.50%), Postives = 125/200 (62.50%), Query Frame = 1
Query:  289 GQVCQVIGAVVDVRFDEGLPPILTALEVE-DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREGKMTCNGK*LKRGVISK 885
            G + Q+IG VVDV F+  LP I  AL+++  +   LV EV QH+G  VVR +AMD T+GL RG  V++TG  ITVPVG+  LGRI+N +GEP+DE G++K E Y PIHREAPAF +Q TE+++  TGIKV DLL PY K             K   I E   N+A+  G   VFAG GE  REG+     + L+ GV+ K
Sbjct:    5 GVITQIIGPVVDVTFENELPRIYNALKIDRGNGEYLVAEVQQHLGNSVVRAVAMDATDGLQRGMEVVDTGPAITVPVGKAVLGRILNVLGEPVDEAGEVKAEEYAPIHREAPAFEDQGTEKEVFETGIKVVDLLAPYVKGGKIGLFGGAGVGKTVLIMELINNIAQGHGGLSVFAGVGERTREGR-DLYDEMLESGVLDK 203          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_GEOLS (ATP synthase subunit beta OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=atpD PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 7.050e-43
Identity = 101/191 (52.88%), Postives = 120/191 (62.83%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----EDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG++ QVIGAV+DV F+ G LP I  AL V     +D    LVLEVAQH+GE  VRTIAMD T+GL RGQ V++TG  I  PVGR TLGRIMN IGEP+DE G +  E    IHREAPAF +Q+T+ +   TGIKV DLL PY +             K   I E   N+AK  G + VFAG GE  REG
Sbjct:    4 NIGKISQVIGAVIDVEFEPGKLPEIYHALRVTNPAIDDRENNLVLEVAQHLGENSVRTIAMDSTDGLKRGQAVIDTGKQICAPVGRKTLGRIMNVIGEPVDEMGPIGNEKEYGIHREAPAFEDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAKQHGGYSVFAGVGERTREG 194          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_CLOK5 (ATP synthase subunit beta OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=atpD PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 9.207e-43
Identity = 87/186 (46.77%), Postives = 123/186 (66.13%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDE-GLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG+V QVIG VVD++FDE  LP I  A+ +E  + +++ EVAQH+G+ +VRTI+M+ T+GL+RG   L+ G+PI+VPVG+  LGR+ N +G+PIDE G+++ + Y PIHR AP+F +Q+ + ++  TGIKV DL+ PYQK             K   I E   N+AK  G   VF G GE  REG
Sbjct:    3 NIGKVVQVIGPVVDIKFDEENLPDIYNAISIESGNAKIITEVAQHLGDDIVRTISMESTDGLMRGMDALDIGAPISVPVGKPVLGRLFNMLGQPIDENGEVEADEYSPIHRPAPSFEDQSVKPEMFETGIKVIDLIAPYQKGGKIGLFGGAGVGKTVIIQELINNIAKEHGGLSVFTGVGERTREG 188          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_CARHZ (ATP synthase subunit beta OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=atpD PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.202e-42
Identity = 95/194 (48.97%), Postives = 122/194 (62.89%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVEDHS--------VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            ++G+V QVIG VVDV F+ G +PPI  AL++            + L LEVAQH+G   VR +AM  T+GLVRG +V++TG+PITVPVGR  LGR++N +GEPID KG ++++HY PIHR AP   EQ+T  +IL TGIKV DLL P+ K             K   + E   N+AK  G   VFAG GE  REG
Sbjct:    2 NVGRVVQVIGVVVDVEFEPGKVPPIYNALKIRSEDQDTPTEVPINLTLEVAQHLGNNRVRAVAMSSTDGLVRGMKVVDTGAPITVPVGRPVLGRLLNVLGEPIDGKGPVESDHYYPIHRPAPPLEEQSTRAEILETGIKVIDLLVPFLKGGKIGLFGGAGVGKTVIVMELINNIAKQHGGISVFAGVGERTREG 195          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB1_GLUOX (ATP synthase subunit beta 1 OS=Gluconobacter oxydans GN=atpD1 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.570e-42
Identity = 100/184 (54.35%), Postives = 117/184 (63.59%), Query Frame = 1
Query:  286 IGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +G+V QV G VVDV+F+  LP IL AL V++    LVLEVAQ +GE  VR IAMD T+GLVRG  V +TG  I VPVG  TLGRI+N +GEPIDE+G + +E   PIHR AP+F EQA   +ILVTGIKV DLL PY K             K   I E   N+AK  G   VFAG GE  REG
Sbjct:   16 VGRVTQVRGPVVDVQFEGDLPFILNALHVQNGDHTLVLEVAQEIGERQVRCIAMDTTDGLVRGTEVRDTGKQIMVPVGPATLGRILNVVGEPIDERGPISSELRFPIHRPAPSFEEQAAASEILVTGIKVVDLLCPYLKGGKIGLFGGAGVGKTVIIQELINNIAKAHGGVSVFAGVGERTREG 199          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_DESDG (ATP synthase subunit beta OS=Desulfovibrio desulfuricans (strain G20) GN=atpD PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 3.499e-42
Identity = 99/190 (52.11%), Postives = 121/190 (63.68%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVEDHS----VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG++ QVIGAVVDV F +G LP IL AL +++ +      L+ EVAQH+G+ VVRTIAMD TEGLVRG  V +TG+PI VPVG  +LGRIMN +G P+DE GD+     LPIHR AP F EQ T  ++L TGIKV DLL P+ K             K   + E   N+AK  G   VFAG GE  REG
Sbjct:    3 NIGKITQVIGAVVDVEFADGNLPNILNALVIKNPNNADCPELICEVAQHLGDNVVRTIAMDATEGLVRGMEVTDTGNPIMVPVGSASLGRIMNVVGRPVDEMGDIDAAKSLPIHRPAPEFNEQNTNVELLETGIKVVDLLIPFPKGGKMGLFGGAGVGKTVILMEMINNIAKQHGGISVFAGVGERTREG 192          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB3_PELCD (ATP synthase subunit beta 3 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=atpD3 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 3.499e-42
Identity = 100/191 (52.36%), Postives = 122/191 (63.87%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVEDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            S G++ QVIG V+DV F+ G LP I  AL+V + S+      LV EVAQH+GE  VR IAMD T+GLVRGQ VLNTG  I+VPVGR TLGRI+N IGEP+DE+G ++T+    IHR  P FV+Q+T+ +   TGIKV DLL PY +             K   I E   N+AK  G F VFAG GE  REG
Sbjct:    2 SNGKITQVIGPVIDVEFEAGELPEIYYALKVSNPSLGDEPWNLVAEVAQHLGENTVRAIAMDSTDGLVRGQEVLNTGRQISVPVGRGTLGRILNVIGEPVDEQGPVETDTTWEIHRPTPEFVDQSTKVEAFETGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELIHNIAKKHGGFSVFAGVGERTREG 192          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB1_PELCD (ATP synthase subunit beta 1 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 3.499e-42
Identity = 100/191 (52.36%), Postives = 122/191 (63.87%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVEDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            S G++ QVIG V+DV F+ G LP I  AL+V + S+      LV EVAQH+GE  VR IAMD T+GLVRGQ VLNTG  I+VPVGR TLGRI+N IGEP+DE+G ++T+    IHR  P FV+Q+T+ +   TGIKV DLL PY +             K   I E   N+AK  G F VFAG GE  REG
Sbjct:    2 SNGKITQVIGPVIDVEFEAGELPEIYYALKVSNPSLGDEPWNLVAEVAQHLGENTVRAIAMDSTDGLVRGQEVLNTGRQISVPVGRGTLGRILNVIGEPVDEQGPVETDTTWEIHRPTPEFVDQSTKVEAFETGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELIHNIAKKHGGFSVFAGVGERTREG 192          
The following BLAST results are available for this feature:
BLAST of DY258549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_CAUSK3.164e-4352.36ATP synthase subunit beta OS=Caulobacter sp. (stra... [more]
ATPB_LAWIP5.398e-4351.58ATP synthase subunit beta OS=Lawsonia intracellula... [more]
ATPB_PROMO7.050e-4348.50ATP synthase subunit beta, sodium ion specific OS=... [more]
ATPB_GEOLS7.050e-4352.88ATP synthase subunit beta OS=Geobacter lovleyi (st... [more]
ATPB_CLOK59.207e-4346.77ATP synthase subunit beta OS=Clostridium kluyveri ... [more]
ATPB_CARHZ1.202e-4248.97ATP synthase subunit beta OS=Carboxydothermus hydr... [more]
ATPB1_GLUOX1.570e-4254.35ATP synthase subunit beta 1 OS=Gluconobacter oxyda... [more]
ATPB_DESDG3.499e-4252.11ATP synthase subunit beta OS=Desulfovibrio desulfu... [more]
ATPB3_PELCD3.499e-4252.36ATP synthase subunit beta 3 OS=Pelobacter carbinol... [more]
ATPB1_PELCD3.499e-4252.36ATP synthase subunit beta 1 OS=Pelobacter carbinol... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258549 ID=DY258549; Name=DY258549; organism=Citrus clementina; type=EST; length=1270bp
GTCTCGCGGCATCCATATCCGTGACCAATGGCTTCACGTAGACTCCTAAC
ATCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTT
CTAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTAT
GGGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCAC
TGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTG
GTAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGT
CAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCC
GATTTTGACCGCGCTTGAAGTGGAAGATCACTCGGTTCGGTTAGTGCTTG
AGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGAT
GGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCC
AATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGACA
TTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTG
CCCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACA
GATTCTAGTCACTGGCATCAAGGTCGATGATCTCCTTGGTCCATACCAAA
AAGGAGGGAAAAATGGGCATTTTGGGGGTGCTGGTGAAAGAAAAATAGAG
CCTATCAATGAAACTAATAAAAATGTTGCAAAAGTCCGGGGGGTTTTCCT
AGTTTTTGCCGGGGGTGGAGAGCCTAACCGTGAAGGGAAAATGACCTGTA
ACGGGAAATGATTGAAGAGGGGTGTTATAAGTAAGGGGAAAAGAAGGCTG
AAAATCAAAAGGGGGACTTGGTCAGGACCAAAGGAATGACCCCCCTGTTG
GCTCGGGCCTGGGGGGGCCTAGACGGGCCTAACGGGTGCCCGAGCCCTTC
CGGGAAAGTCTGAGGGGGGAGAAAAAGGCTTCGCTCTCTTCTCCCAAACA
TTTTCCCCTTTCACCCCAACCCAAATCCCAAAAGGGGGCCTGGCTTGGTT
GGGGGGCCGAATCTCCCTCCCGTGGGGGGGGGTACCCCAACCCCCCGCGT
TCGGGTGACGCGGGATATCTGGGGGGGCCCTCCCCCCGCAAGAAGGAGTC
ACCACACACCCCACCACAAGGAAAAAGGGGGGTCTCCACCTCCGCACCTT
CTTTCCGCGTCACTCAAACA
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