DY258549

Overview
NameDY258549
Unique NameDY258549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1270
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_THESQ (ATP synthase subunit beta OS=Thermotoga sp. (strain RQ2) GN=atpD PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 8.618e-41
Identity = 95/190 (50.00%), Postives = 123/190 (64.74%), Query Frame = 1
Query:  277 KGSIGQVCQVIGAVVDVRF-DEGLPPILTALEVEDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            KGS G +  ++G VVDV+F +E LP I  ALEV +     ++VLEV Q +G+GVVRT+AMD T+GL +G  V++TG+PIT PVG+  LGRI+N IGEP+DE G++K +   PIHR AP  VEQ+TE +IL TGIKV DLL P+ K             K   + E  +N+A     F VFAG GE  REG
Sbjct:    3 KGSKGFIVSIMGPVVDVKFPEEELPDIYNALEVVNPQTGQKVVLEVEQLIGDGVVRTVAMDSTDGLTKGLEVVDTGAPITAPVGKEVLGRILNVIGEPVDEAGEIKAKERWPIHRPAPELVEQSTEIEILETGIKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMELIRNIAIEHKGFSVFAGVGERTREG 192          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_THEP1 (ATP synthase subunit beta OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=atpD PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 8.618e-41
Identity = 95/190 (50.00%), Postives = 123/190 (64.74%), Query Frame = 1
Query:  277 KGSIGQVCQVIGAVVDVRF-DEGLPPILTALEVEDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            KGS G +  ++G VVDV+F +E LP I  ALEV +     ++VLEV Q +G+GVVRT+AMD T+GL +G  V++TG+PIT PVG+  LGRI+N IGEP+DE G++K +   PIHR AP  VEQ+TE +IL TGIKV DLL P+ K             K   + E  +N+A     F VFAG GE  REG
Sbjct:    3 KGSKGFIVSIMGPVVDVKFPEEELPDIYNALEVVNPQTGQKVVLEVEQLIGDGVVRTVAMDSTDGLTKGLEVVDTGAPITAPVGKEVLGRILNVIGEPVDEAGEIKAKERWPIHRPAPELVEQSTEIEILETGIKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMELIRNIAIEHKGFSVFAGVGERTREG 192          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_THEMA (ATP synthase subunit beta OS=Thermotoga maritima GN=atpD PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 8.618e-41
Identity = 95/190 (50.00%), Postives = 123/190 (64.74%), Query Frame = 1
Query:  277 KGSIGQVCQVIGAVVDVRF-DEGLPPILTALEVEDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            KGS G +  ++G VVDV+F +E LP I  ALEV +     ++VLEV Q +G+GVVRT+AMD T+GL +G  V++TG+PIT PVG+  LGRI+N IGEP+DE G++K +   PIHR AP  VEQ+TE +IL TGIKV DLL P+ K             K   + E  +N+A     F VFAG GE  REG
Sbjct:    3 KGSKGFIVSIMGPVVDVKFPEEELPDIYNALEVVNPQTGQKVVLEVEQLIGDGVVRTVAMDSTDGLTKGLEVVDTGAPITAPVGKEVLGRILNVIGEPVDEAGEIKAKERWPIHRPAPELVEQSTEIEILETGIKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMELIRNIAIEHKGFSVFAGVGERTREG 192          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_FERNB (ATP synthase subunit beta OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=atpD PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.470e-40
Identity = 95/190 (50.00%), Postives = 119/190 (62.63%), Query Frame = 1
Query:  277 KGSIGQVCQVIGAVVDVRFDEG-LPPILTALEVEDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            K SIG++ ++IG VVDV+F EG LP I  AL V +     +L+LEV Q +G+  VRT+AMD T+GL+RG  V NTG PI  PVGR  LGR++N IGEPIDE G+LK   Y PIHR AP+  EQ TE +IL TG+KV DLL P+ K             K   + E  +N+A     F +FAG GE  REG
Sbjct:    3 KKSIGKIVRIIGPVVDVKFSEGELPDIYDALVVNNPQTGKKLILEVEQLIGDNTVRTVAMDSTDGLIRGMEVENTGEPIKAPVGRGILGRMINVIGEPIDENGELKDVEYWPIHRPAPSMAEQKTEIEILETGLKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMEMIRNIAIEHKGFSMFAGVGERTREG 192          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_FERIS (ATP synthase subunit beta OS=Fervidobacterium islandicum GN=atpD PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.470e-40
Identity = 95/190 (50.00%), Postives = 120/190 (63.16%), Query Frame = 1
Query:  277 KGSIGQVCQVIGAVVDVRFDEG-LPPILTALEVEDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            K S+G++ ++IG VVDV+F EG LP I  AL V +     +L+LEV Q +G+ +VRT+AMD T+GLVRG  V NTG PI  PVGR  LGR+ N IGEPIDE+G+LK   Y PIHR AP+  EQ TE +IL TG+KV DLL P+ K             K   + E  +N+A     F +FAG GE  REG
Sbjct:    3 KKSVGKIVRIIGPVVDVKFQEGDLPDIYDALVVINPQTGKKLILEVEQLIGDNIVRTVAMDSTDGLVRGLEVENTGEPIKAPVGRGVLGRMFNVIGEPIDEQGELKDIEYWPIHRPAPSMTEQKTEIEILETGLKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMEMIRNIAIEHHGFSIFAGVGERTREG 192          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_BDEBA (ATP synthase subunit beta OS=Bdellovibrio bacteriovorus GN=atpD PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.470e-40
Identity = 99/191 (51.83%), Postives = 119/191 (62.30%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVE-----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            + G+V QV+G VVDV F+ G LP I +AL V      D    LVLEVAQH+G+GVVRTI+MD TEGLVRG++V   G+ IT PVGR  LGRI+N +GEPIDE G +  +    IHR AP F +QAT   +L+TGIKV DLL PY K             K   I E  +N+A   G F VFAG GE  REG
Sbjct:    2 AFGKVKQVMGPVVDVEFEGGELPAINSALRVSNKFISDVEFNLVLEVAQHLGDGVVRTISMDQTEGLVRGEKVKALGTQITAPVGREALGRIINVVGEPIDEMGPVNAKEQWGIHRTAPKFEDQATAAAMLMTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELIRNIATEHGGFSVFAGVGERTREG 192          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_CLOPH (ATP synthase subunit beta OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=atpD PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.507e-40
Identity = 94/189 (49.74%), Postives = 120/189 (63.49%), Query Frame = 1
Query:  277 KGSIGQVCQVIGAVVDVRFDEG-LPPILTALEVEDHSV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            K  +G++ Q+IGAV+D++F EG LP I  A++++ +    LV+EVAQH+G+  VR IAM  T+GLVRG     TG+PI+VPVG  TLGR+ N +G PIDEK   K   Y PIHR+APAF EQ+T+ +IL TGIKV DLL PYQK             K   I E   N+A   G + VF G GE  REG
Sbjct:    9 KSGLGKITQIIGAVLDIKFAEGKLPEIYEAIKIKKNDGDTLVVEVAQHLGDDTVRCIAMGPTDGLVRGMDAEGTGAPISVPVGENTLGRMFNVLGNPIDEKEAPKNVEYYPIHRKAPAFEEQSTQTEILETGIKVVDLLCPYQKGGKIGLFGGAGVGKTVLIQELITNIATEHGGYSVFTGVGERTREG 197          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_SYNFM (ATP synthase subunit beta OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=atpD PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.275e-40
Identity = 94/191 (49.21%), Postives = 119/191 (62.30%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVE-----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            ++G++ QVIG VVDV F EG LPP+LTAL V      D    LVLEVAQH+G+ VVRTI MD T+GLVRG  V +TG+PI +PVG   LGR++N +G  +D  G + T+ Y+PIHR APAF EQ T  ++L TG+KV DLL P+ +             K   + E   N+A   G   VFAG GE  REG
Sbjct:    2 NLGKIVQVIGNVVDVEFGEGKLPPLLTALFVSNPGLNDQEDNLVLEVAQHLGDNVVRTIGMDLTDGLVRGMPVKDTGNPIMMPVGAAVLGRVINVVGRTVDGLGPVNTDTYMPIHRTAPAFTEQDTSVKVLETGVKVIDLLVPFPRGGKMGMFGGAGVGKTVVMMEMIHNIAMQHGGISVFAGVGERTREG 192          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_ANATD (ATP synthase subunit beta OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=atpD PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 4.277e-40
Identity = 89/186 (47.85%), Postives = 113/186 (60.75%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFD-EGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            ++G V Q+IG V+D+RF+ E LP I  A+E+     +LV EVAQH+G   VR +A+  T+GL RG + ++TG PI VPVGR TLGRI N +GEPID KG++    Y PIHR AP+F EQ    +I  TGIKV DLL PY K             K   I E  +N+A   G F +F G GE  REG
Sbjct:    4 NVGYVVQIIGPVIDIRFESENLPAINNAIEIHFDGKKLVAEVAQHLGNDTVRCVALGSTDGLRRGVKAIDTGGPIKVPVGRGTLGRIFNVLGEPIDNKGEVVASDYWPIHRSAPSFEEQVPAVEIFETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELIRNIATEHGGFSIFTGVGERTREG 189          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_WOLPP (ATP synthase subunit beta OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=atpD PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 5.586e-40
Identity = 93/188 (49.47%), Postives = 122/188 (64.89%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEGLPPILTALE--VEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYL-PIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            S G+V ++  AVVD++F++GLP I  AL+  ++     LVLEV+QH+G+ +VR IAMD T+G+ RG   ++TG+PI+VPVGR TLGRI N +GE IDE G LK ++ L PIHR  P+F EQ  ++++LVTGIKV DLL PY K             K   I E   N+AK    F VFAG GE  REG
Sbjct:    2 STGKVVKITQAVVDLKFEDGLPKIFNALKSKLKYKGKELVLEVSQHIGDNIVRCIAMDSTDGMSRGDEFVDTGAPISVPVGRSTLGRIFNVVGELIDECGPLKGKYDLEPIHRSPPSFTEQKIQEEVLVTGIKVIDLLAPYLKGGKIGLFGGAGVGKTVLIMELINNIAKAHKGFSVFAGVGERTREG 189          
The following BLAST results are available for this feature:
BLAST of DY258549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_THESQ8.618e-4150.00ATP synthase subunit beta OS=Thermotoga sp. (strai... [more]
ATPB_THEP18.618e-4150.00ATP synthase subunit beta OS=Thermotoga petrophila... [more]
ATPB_THEMA8.618e-4150.00ATP synthase subunit beta OS=Thermotoga maritima G... [more]
ATPB_FERNB1.470e-4050.00ATP synthase subunit beta OS=Fervidobacterium nodo... [more]
ATPB_FERIS1.470e-4050.00ATP synthase subunit beta OS=Fervidobacterium isla... [more]
ATPB_BDEBA1.470e-4051.83ATP synthase subunit beta OS=Bdellovibrio bacterio... [more]
ATPB_CLOPH2.507e-4049.74ATP synthase subunit beta OS=Clostridium phytoferm... [more]
ATPB_SYNFM3.275e-4049.21ATP synthase subunit beta OS=Syntrophobacter fumar... [more]
ATPB_ANATD4.277e-4047.85ATP synthase subunit beta OS=Anaerocellum thermoph... [more]
ATPB_WOLPP5.586e-4049.47ATP synthase subunit beta OS=Wolbachia pipientis s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258549 ID=DY258549; Name=DY258549; organism=Citrus clementina; type=EST; length=1270bp
GTCTCGCGGCATCCATATCCGTGACCAATGGCTTCACGTAGACTCCTAAC
ATCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTT
CTAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTAT
GGGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCAC
TGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTG
GTAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGT
CAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCC
GATTTTGACCGCGCTTGAAGTGGAAGATCACTCGGTTCGGTTAGTGCTTG
AGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGAT
GGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCC
AATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGACA
TTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTG
CCCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACA
GATTCTAGTCACTGGCATCAAGGTCGATGATCTCCTTGGTCCATACCAAA
AAGGAGGGAAAAATGGGCATTTTGGGGGTGCTGGTGAAAGAAAAATAGAG
CCTATCAATGAAACTAATAAAAATGTTGCAAAAGTCCGGGGGGTTTTCCT
AGTTTTTGCCGGGGGTGGAGAGCCTAACCGTGAAGGGAAAATGACCTGTA
ACGGGAAATGATTGAAGAGGGGTGTTATAAGTAAGGGGAAAAGAAGGCTG
AAAATCAAAAGGGGGACTTGGTCAGGACCAAAGGAATGACCCCCCTGTTG
GCTCGGGCCTGGGGGGGCCTAGACGGGCCTAACGGGTGCCCGAGCCCTTC
CGGGAAAGTCTGAGGGGGGAGAAAAAGGCTTCGCTCTCTTCTCCCAAACA
TTTTCCCCTTTCACCCCAACCCAAATCCCAAAAGGGGGCCTGGCTTGGTT
GGGGGGCCGAATCTCCCTCCCGTGGGGGGGGGTACCCCAACCCCCCGCGT
TCGGGTGACGCGGGATATCTGGGGGGGCCCTCCCCCCGCAAGAAGGAGTC
ACCACACACCCCACCACAAGGAAAAAGGGGGGTCTCCACCTCCGCACCTT
CTTTCCGCGTCACTCAAACA
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