DY258549

Overview
NameDY258549
Unique NameDY258549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1270
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RHOCA (ATP synthase subunit beta OS=Rhodobacter capsulatus GN=atpD PE=1 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 1.200e-50
Identity = 110/185 (59.46%), Postives = 125/185 (67.57%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            S G+V QVIGAVVDV+F++GLP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD TEGLVRG  V +TG PITVPVG  TLGRI+N IGEP+DE+GD+       IH+ AP F  Q+TE QILVTGIKV DLL PY K             K   I E   N+AKV   F VFAG GE  REG
Sbjct:    3 SKGKVTQVIGAVVDVQFEDGLPAILNALETTNNGKRLVLEVAQHLGENTVRTIAMDATEGLVRGAAVSDTGGPITVPVGNATLGRILNVIGEPVDERGDVSKAEARAIHQPAPDFAAQSTESQILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVHSGFSVFAGVGERTREG 187          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_NITWN (ATP synthase subunit beta OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=atpD PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.200e-50
Identity = 108/189 (57.14%), Postives = 129/189 (68.25%), Query Frame = 1
Query:  271 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            T    +G++ QVIGAVVDV+F+  LP IL A+E ++   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMN IGEP+DE+G +K +   PIH EAP++ +Q+TE +ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    3 TAANQVGRITQVIGAVVDVQFEGHLPAILNAIETKNGENRLVLEVAQHLGESTVRTIAMDTTEGLVRGQDVTDTGAPIRVPVGAGTLGRIMNVIGEPVDEQGPVKADDLRPIHAEAPSYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGVGERTREG 191          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_ZYMMO (ATP synthase subunit beta OS=Zymomonas mobilis GN=atpD PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 2.673e-50
Identity = 111/216 (51.39%), Postives = 141/216 (65.28%), Query Frame = 1
Query:  271 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREGKMTCNGK*LKRGVISKGKRRLKIKRGT 918
            + K +IG++ QVIG VVDV F+E LPP+LTALE ++    +VLEVAQH+GE VVRTI+MD T+GLVRGQ V++TGS I VPVG  TLGRIMN +G P+DE+G + ++  +PIH +AP F EQ+T+  IL TGIKV DLL PY K             K   I E   N+AK  G F VFAG GE  REG    + + L+ GVI+  K    I  G+
Sbjct:    5 SSKKNIGRISQVIGPVVDVLFEEKLPPLLTALETKNQDATVVLEVAQHLGENVVRTISMDTTDGLVRGQEVVDTGSEIRVPVGPETLGRIMNVVGRPVDERGPIGSKQTMPIHADAPPFTEQSTDTAILTTGIKVIDLLAPYSKGGKVGLFGGAGVGKTVLIQELINNIAKGHGGFSVFAGVGERTREGNDLYH-EFLEAGVIASDKDGNAISEGS 219          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_NEUCR (ATP synthase subunit beta, mitochondrial OS=Neurospora crassa GN=atp-2 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 2.673e-50
Identity = 105/184 (57.07%), Postives = 130/184 (70.65%), Query Frame = 1
Query:  289 GQVCQVIGAVVDVRFD-EGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            G++ QVIGAVVDV+FD + LPPIL ALE +++  +LVLEV+QH+GE VVR IAMDGTEGLVRG +  +TG+PIT+PVG  TLGRI+N  G+PIDE+G +KT+ + PIH EAP FVEQ+T  +ILVTGIKV DLL PY +             K   I E   N+AK  G + VF G GE  REG
Sbjct:   49 GKIYQVIGAVVDVKFDTDKLPPILNALETQNNGQKLVLEVSQHLGENVVRCIAMDGTEGLVRGAKASDTGAPITIPVGPATLGRIINVTGDPIDERGPIKTDKFRPIHAEAPEFVEQSTTAEILVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGYSVFTGVGERTREG 232          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPA (ATP synthase subunit beta OS=Rhodopseudomonas palustris GN=atpD PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 3.491e-50
Identity = 108/189 (57.14%), Postives = 130/189 (68.78%), Query Frame = 1
Query:  271 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            T     G++ QVIGAVVDV+F+  LP IL A+E ++   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI+VPVG  TLGRIMN IGEP+DE+G +K+E    IH+EAPA+ +Q+TE +ILVTGIKV DLL PY K             K   I E   NVA+  G + VFAG GE  REG
Sbjct:    3 TPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGAPISVPVGAGTLGRIMNVIGEPVDEQGPIKSEGLRAIHQEAPAYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVARAHGGYSVFAGVGERTREG 191          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_PELUB (ATP synthase subunit beta OS=Pelagibacter ubique GN=atpD PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 3.491e-50
Identity = 111/185 (60.00%), Postives = 127/185 (68.65%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            S G++ Q+IGAVVDV+FD  LP IL+ALE ++   RLVLEVAQH+GE  VRTIAMD TEGL RG  V  TG+PI VPVG  TLGRI+N IGEPIDEKG++KT+   PIHR AP F +Q+TE +ILVTGIKV DLL PY K             K   I E   NVAK  G F VFAG GE  REG
Sbjct:    2 SKGKITQIIGAVVDVKFDGELPEILSALECKNGDNRLVLEVAQHLGESSVRTIAMDATEGLKRGDEVTATGAPIQVPVGPETLGRIINVIGEPIDEKGEVKTKEKWPIHRAAPEFSDQSTETEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 186          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_ERYLH (ATP synthase subunit beta OS=Erythrobacter litoralis (strain HTCC2594) GN=atpD PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 7.776e-50
Identity = 115/210 (54.76%), Postives = 136/210 (64.76%), Query Frame = 1
Query:  289 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREGKMTCNGK*LKRGVISKGKRRLKIKRGT 918
            G + QVIGAVVDV+F   LP ILTALE E+    LVLEVAQH+GE  VRTIAMDGT+GLVRGQ V+NTG+ I+VPVG  TLGRIMN +GEPID +G +  +   PIH EAPAFV+Q+T+  ILVTGIKV DLL PY K             K   I E   N+AK  G   VFAG GE  REG    + + L  GVI+K +    I  G+
Sbjct:   13 GTISQVIGAVVDVQFPGELPAILTALETENGDTTLVLEVAQHLGENTVRTIAMDGTDGLVRGQEVINTGAQISVPVGPKTLGRIMNVVGEPIDMRGPVGADKANPIHAEAPAFVDQSTDAAILVTGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGVSVFAGVGERTREGNDLYH-EFLDAGVIAKNEAGEAISEGS 221          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RHOP5 (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisA53) GN=atpD PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.016e-49
Identity = 108/183 (59.02%), Postives = 126/183 (68.85%), Query Frame = 1
Query:  289 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            G++ QVIGAVVDV+F+  LP IL A+E ++ + RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TGSPI VPVG  TLGRIMN IGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    9 GRITQVIGAVVDVQFEGHLPAILNAIETKNGNNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGSPIMVPVGLGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPLYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGVGERTREG 191          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB1_BRASB (ATP synthase subunit beta 1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.016e-49
Identity = 108/189 (57.14%), Postives = 128/189 (67.72%), Query Frame = 1
Query:  271 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            T    IG++ QVIGAVVDV+F+  LP IL +LE ++   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRI+N IGEPIDE G +K +    IH+EAP++ +Q+TE +ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    3 TAANQIGRITQVIGAVVDVQFEGHLPAILNSLETKNAGNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGAPIRVPVGEGTLGRIINVIGEPIDEAGPVKADSLRAIHQEAPSYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGVGERTREG 191          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPS (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisB5) GN=atpD PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.326e-49
Identity = 109/189 (57.67%), Postives = 126/189 (66.67%), Query Frame = 1
Query:  271 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            T     G++ QVIGAVVDV+F+  LP IL A+E ++   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TGSPI VPVG  TLGRIMN IGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    3 TPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGSPIMVPVGIGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPLYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGVGERTREG 191          
The following BLAST results are available for this feature:
BLAST of DY258549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RHOCA1.200e-5059.46ATP synthase subunit beta OS=Rhodobacter capsulatu... [more]
ATPB_NITWN1.200e-5057.14ATP synthase subunit beta OS=Nitrobacter winograds... [more]
ATPB_ZYMMO2.673e-5051.39ATP synthase subunit beta OS=Zymomonas mobilis GN=... [more]
ATPB_NEUCR2.673e-5057.07ATP synthase subunit beta, mitochondrial OS=Neuros... [more]
ATPB_RHOPA3.491e-5057.14ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_PELUB3.491e-5060.00ATP synthase subunit beta OS=Pelagibacter ubique G... [more]
ATPB_ERYLH7.776e-5054.76ATP synthase subunit beta OS=Erythrobacter litoral... [more]
ATPB_RHOP51.016e-4959.02ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB1_BRASB1.016e-4957.14ATP synthase subunit beta 1 OS=Bradyrhizobium sp. ... [more]
ATPB_RHOPS1.326e-4957.67ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258549 ID=DY258549; Name=DY258549; organism=Citrus clementina; type=EST; length=1270bp
GTCTCGCGGCATCCATATCCGTGACCAATGGCTTCACGTAGACTCCTAAC
ATCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTT
CTAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTAT
GGGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCAC
TGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTG
GTAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGT
CAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCC
GATTTTGACCGCGCTTGAAGTGGAAGATCACTCGGTTCGGTTAGTGCTTG
AGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGAT
GGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCC
AATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGACA
TTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTG
CCCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACA
GATTCTAGTCACTGGCATCAAGGTCGATGATCTCCTTGGTCCATACCAAA
AAGGAGGGAAAAATGGGCATTTTGGGGGTGCTGGTGAAAGAAAAATAGAG
CCTATCAATGAAACTAATAAAAATGTTGCAAAAGTCCGGGGGGTTTTCCT
AGTTTTTGCCGGGGGTGGAGAGCCTAACCGTGAAGGGAAAATGACCTGTA
ACGGGAAATGATTGAAGAGGGGTGTTATAAGTAAGGGGAAAAGAAGGCTG
AAAATCAAAAGGGGGACTTGGTCAGGACCAAAGGAATGACCCCCCTGTTG
GCTCGGGCCTGGGGGGGCCTAGACGGGCCTAACGGGTGCCCGAGCCCTTC
CGGGAAAGTCTGAGGGGGGAGAAAAAGGCTTCGCTCTCTTCTCCCAAACA
TTTTCCCCTTTCACCCCAACCCAAATCCCAAAAGGGGGCCTGGCTTGGTT
GGGGGGCCGAATCTCCCTCCCGTGGGGGGGGGTACCCCAACCCCCCGCGT
TCGGGTGACGCGGGATATCTGGGGGGGCCCTCCCCCCGCAAGAAGGAGTC
ACCACACACCCCACCACAAGGAAAAAGGGGGGTCTCCACCTCCGCACCTT
CTTTCCGCGTCACTCAAACA
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