DY258549

Overview
NameDY258549
Unique NameDY258549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1270
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_OLICO (ATP synthase subunit beta OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=atpD PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.326e-49
Identity = 107/184 (58.15%), Postives = 125/184 (67.93%), Query Frame = 1
Query:  286 IGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +G++ QVIGAVVDV+FD  LP IL A+E  +   RLVLEVAQH+GE  VR IAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMN +GEP+DE G +K +    IH+EAPA+ EQ+TE +ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    8 VGRITQVIGAVVDVQFDGYLPAILNAIETTNQGHRLVLEVAQHLGESTVRAIAMDTTEGLVRGQEVTDTGAPIKVPVGEGTLGRIMNVVGEPVDEGGPVKADGTRAIHQEAPAYTEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGVGERTREG 191          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_MESSB (ATP synthase subunit beta OS=Mesorhizobium sp. (strain BNC1) GN=atpD PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.732e-49
Identity = 108/189 (57.14%), Postives = 125/189 (66.14%), Query Frame = 1
Query:  271 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            T  G IG V QVIGAVVDV+F E LP IL ALE ++   RLVLEVAQH+GE  VR IAMD T+GLVRGQ V +TG+PI+VPVG   LGRI+N IGEP+DE G +    +  IH+ AP +VEQ+TE QILVTGIKV DLL PY +             K   I E   NVAK  G + VFAG GE  REG
Sbjct:   46 TASGKIGSVRQVIGAVVDVQFQENLPAILNALETDNQGNRLVLEVAQHLGENTVRCIAMDSTDGLVRGQEVRDTGAPISVPVGPEMLGRIINVIGEPVDEAGPITATEFRGIHQPAPEYVEQSTEAQILVTGIKVLDLLAPYARGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGVGERTREG 234          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_BRAJA (ATP synthase subunit beta OS=Bradyrhizobium japonicum GN=atpD PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.732e-49
Identity = 109/183 (59.56%), Postives = 126/183 (68.85%), Query Frame = 1
Query:  289 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            G+V QVIGAVVDV+F+  LP IL +LE ++   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TGSPI VPVG  TLGRI+N IGEPIDE G +K+E    IH+EAP + +Q+TE +ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    6 GRVTQVIGAVVDVQFEGHLPAILNSLETKNGGNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGSPIRVPVGEGTLGRIINVIGEPIDEAGPVKSEGLRAIHQEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGVGERTREG 188          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_ROSDO (ATP synthase subunit beta OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.263e-49
Identity = 105/185 (56.76%), Postives = 125/185 (67.57%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            ++G++ QVIGAVVDV+F + LP IL ALE  ++  RLVLEVAQH+GE  VR IAMD TEGLVRGQ V +T  PI++PVG  TLGRIMN +GEPIDEKG + T+    IH+EAPAF EQ+T  ++L TGIKV DLL PY K             K   I E   N+AKV   F VFAG GE  REG
Sbjct:    4 AVGKITQVIGAVVDVQFADHLPEILNALETNNNGNRLVLEVAQHLGENTVRAIAMDATEGLVRGQTVTDTDGPISIPVGNATLGRIMNVVGEPIDEKGPVATDETRSIHQEAPAFAEQSTSSEVLETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKVHSGFSVFAGVGERTREG 188          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPB (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisB18) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.263e-49
Identity = 108/189 (57.14%), Postives = 127/189 (67.20%), Query Frame = 1
Query:  271 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            T     G++ QVIGAVVDV+F+  LP IL A+E ++ + RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMN IGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    3 TPANQTGRITQVIGAVVDVQFEGHLPAILNAVETKNGNNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGNPIMVPVGVGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGVGERTREG 191          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RHOP2 (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain HaA2) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.263e-49
Identity = 108/189 (57.14%), Postives = 126/189 (66.67%), Query Frame = 1
Query:  271 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            T     G++ QVIGAVVDV+F+  LP IL A+E ++   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMN IGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    3 TPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGNPIMVPVGVGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGVGERTREG 191          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_NOVAD (ATP synthase subunit beta OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.263e-49
Identity = 113/201 (56.22%), Postives = 133/201 (66.17%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREGKMTCNGK*LKRGVISK 885
            S G++ QVIGAVVDV FD  LP IL+ALE +++  RLVLEVAQH+GE  VRTIAMD T+GL RGQ V NTG+ I+VPVG  TLGRIMN IGEPIDE+G +  E   PIH +AP F+EQ+TE  ILVTGIKV DLL PY +             K   I E   N+AK  G   VFAG GE  REG    + + L  GVI+K
Sbjct:    7 STGKISQVIGAVVDVTFDGELPAILSALETDNNGNRLVLEVAQHLGENTVRTIAMDSTDGLTRGQPVTNTGAQISVPVGPKTLGRIMNVIGEPIDERGPVGAEQTAPIHAKAPEFIEQSTEAAILVTGIKVIDLLAPYARGGKIGLFGGAGVGKTVLIQELINNIAKGHGGVSVFAGVGERTREGNDLYH-EFLDAGVIAK 206          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_BRASO (ATP synthase subunit beta OS=Bradyrhizobium sp. (strain ORS278) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.263e-49
Identity = 108/189 (57.14%), Postives = 127/189 (67.20%), Query Frame = 1
Query:  271 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            T    IG+V QVIGAVVDV+F+  LP IL +LE ++   RLVLEVAQH+GE  VR IAMD TEGLVRGQ V +TG+PI VPVG  TLGRI+N IGEPIDE G +K ++   IH+EAP + +Q+TE +ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    3 TAANQIGRVTQVIGAVVDVQFEGHLPAILNSLETKNGGNRLVLEVAQHLGESTVRAIAMDTTEGLVRGQEVTDTGAPIRVPVGEGTLGRIINVIGEPIDEAGPVKADNVRAIHQEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGVGERTREG 191          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_BARBK (ATP synthase subunit beta OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.263e-49
Identity = 104/187 (55.61%), Postives = 128/187 (68.45%), Query Frame = 1
Query:  277 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            KG++G++ QVIGA+VDV+F+  LP IL ALE +    RL+LEVAQH+GE  VRTIAMD T+GLVRGQ+V +TG+ I VPVG  TLGRIMN IGEP+DE G + T     IH++AP ++EQ+TE +ILVTGIKV DLL PY K             K   I E   N+AK  G + VFAG GE  REG
Sbjct:   60 KGAVGEIKQVIGAIVDVQFEGALPNILNALETDRLGSRLILEVAQHLGENTVRTIAMDTTDGLVRGQKVFDTGTQICVPVGEATLGRIMNVIGEPVDEVGPIVTTKTRSIHQKAPEYIEQSTESEILVTGIKVVDLLAPYSKGGKVGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREG 246          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_PARL1 (ATP synthase subunit beta OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.955e-49
Identity = 107/185 (57.84%), Postives = 126/185 (68.11%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            ++G++ QVIGAVVDV F + LP IL ALE  +   RLVLEVAQH+GE  VRTIAMD TEGL RGQ V +TG+ ITVPVG  TLGRI+N IGEP+DE G +K E    IH+EAP+FVEQ+TE Q+LVTGIKV DLL PY +             K   I E   N+AK  G + VFAG GE  REG
Sbjct:    4 AVGKIAQVIGAVVDVTFTDNLPAILNALETTNGGNRLVLEVAQHLGENTVRTIAMDTTEGLTRGQEVRDTGNAITVPVGEGTLGRIINVIGEPVDEAGPVKHEARREIHQEAPSFVEQSTEAQMLVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIQELINNIAKAHGGYSVFAGVGERTREG 188          
The following BLAST results are available for this feature:
BLAST of DY258549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_OLICO1.326e-4958.15ATP synthase subunit beta OS=Oligotropha carboxido... [more]
ATPB_MESSB1.732e-4957.14ATP synthase subunit beta OS=Mesorhizobium sp. (st... [more]
ATPB_BRAJA1.732e-4959.56ATP synthase subunit beta OS=Bradyrhizobium japoni... [more]
ATPB_ROSDO2.263e-4956.76ATP synthase subunit beta OS=Roseobacter denitrifi... [more]
ATPB_RHOPB2.263e-4957.14ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_RHOP22.263e-4957.14ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_NOVAD2.263e-4956.22ATP synthase subunit beta OS=Novosphingobium aroma... [more]
ATPB_BRASO2.263e-4957.14ATP synthase subunit beta OS=Bradyrhizobium sp. (s... [more]
ATPB_BARBK2.263e-4955.61ATP synthase subunit beta OS=Bartonella bacillifor... [more]
ATPB_PARL12.955e-4957.84ATP synthase subunit beta OS=Parvibaculum lavament... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258549 ID=DY258549; Name=DY258549; organism=Citrus clementina; type=EST; length=1270bp
GTCTCGCGGCATCCATATCCGTGACCAATGGCTTCACGTAGACTCCTAAC
ATCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTT
CTAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTAT
GGGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCAC
TGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTG
GTAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGT
CAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCC
GATTTTGACCGCGCTTGAAGTGGAAGATCACTCGGTTCGGTTAGTGCTTG
AGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGAT
GGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCC
AATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGACA
TTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTG
CCCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACA
GATTCTAGTCACTGGCATCAAGGTCGATGATCTCCTTGGTCCATACCAAA
AAGGAGGGAAAAATGGGCATTTTGGGGGTGCTGGTGAAAGAAAAATAGAG
CCTATCAATGAAACTAATAAAAATGTTGCAAAAGTCCGGGGGGTTTTCCT
AGTTTTTGCCGGGGGTGGAGAGCCTAACCGTGAAGGGAAAATGACCTGTA
ACGGGAAATGATTGAAGAGGGGTGTTATAAGTAAGGGGAAAAGAAGGCTG
AAAATCAAAAGGGGGACTTGGTCAGGACCAAAGGAATGACCCCCCTGTTG
GCTCGGGCCTGGGGGGGCCTAGACGGGCCTAACGGGTGCCCGAGCCCTTC
CGGGAAAGTCTGAGGGGGGAGAAAAAGGCTTCGCTCTCTTCTCCCAAACA
TTTTCCCCTTTCACCCCAACCCAAATCCCAAAAGGGGGCCTGGCTTGGTT
GGGGGGCCGAATCTCCCTCCCGTGGGGGGGGGTACCCCAACCCCCCGCGT
TCGGGTGACGCGGGATATCTGGGGGGGCCCTCCCCCCGCAAGAAGGAGTC
ACCACACACCCCACCACAAGGAAAAAGGGGGGTCTCCACCTCCGCACCTT
CTTTCCGCGTCACTCAAACA
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