DY258549

Overview
NameDY258549
Unique NameDY258549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1270
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_BART1 (ATP synthase subunit beta OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.955e-49
Identity = 106/194 (54.64%), Postives = 131/194 (67.53%), Query Frame = 1
Query:  256 ITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +  E   KG++G++ QVIGAVVDV+F+  LP IL ALE E+   RLVLEVAQH+GE  VRTIAMD T+GL+RGQ+V++TG+ I+VPVG  TLGRIMN IGEP+D  G + +     IH+EAP +VEQ+T  +ILVTGIKV DLL PY K             K   I E   N+AK  G + VFAG GE  REG
Sbjct:   58 VKKEERAKGTVGEIKQVIGAVVDVQFEGALPNILNALETENLGNRLVLEVAQHLGENTVRTIAMDTTDGLMRGQKVVDTGAQISVPVGEATLGRIMNVIGEPVDNVGPIASTKTRSIHQEAPEYVEQSTVSEILVTGIKVVDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREG 251          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_NITHX (ATP synthase subunit beta OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=atpD PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 3.859e-49
Identity = 107/183 (58.47%), Postives = 126/183 (68.85%), Query Frame = 1
Query:  289 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            G++ QVIGAVVDV+F+  LP IL A+E ++   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMN IGEP+DE+G +K E    IH+EAP + +Q+TE +ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    9 GRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVKDTGNPILVPVGVGTLGRIMNVIGEPVDEQGPVKAEDMRAIHQEAPLYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGGYSVFAGVGERTREG 191          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_SPHWW (ATP synthase subunit beta OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=atpD PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 5.040e-49
Identity = 112/201 (55.72%), Postives = 131/201 (65.17%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREGKMTCNGK*LKRGVISK 885
            ++G++ QVIGAVVDV FD  LP IL ALE  ++  RLVLEVAQH+GEG VRTIAMD T+GL RGQ V +TGS I VPVG  TLGRI+N IGEPIDE+G +      PIH EAP FV+Q+T+  ILVTGIKV DLL PY K             K   I E   N+AK  G   VFAG GE  REG    + + L  GVI+K
Sbjct:    9 NVGRISQVIGAVVDVSFDGSLPAILNALETTNNGNRLVLEVAQHLGEGTVRTIAMDATDGLTRGQEVTDTGSQIRVPVGPQTLGRILNVIGEPIDERGPVNATQTSPIHAEAPLFVDQSTDASILVTGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGTSVFAGVGERTREGNDLYH-EFLDAGVIAK 208          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_SILPO (ATP synthase subunit beta OS=Silicibacter pomeroyi GN=atpD PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 5.040e-49
Identity = 106/183 (57.92%), Postives = 123/183 (67.21%), Query Frame = 1
Query:  289 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            G+V Q+IGAVVDV+FD+ LP IL ALE E++  RLVLEVAQH+GE  VRTIAMD TEGLVRG  V +TG PI+VPVG  TLGRI+N IGEP+DEKG +       IH+ AP+F EQ+T   ILVTGIKV DLL PY K             K   I E   N+AKV   + VFAG GE  REG
Sbjct:    6 GKVTQIIGAVVDVQFDDALPEILNALETENNGKRLVLEVAQHLGENTVRTIAMDATEGLVRGAVVTDTGGPISVPVGAATLGRILNVIGEPVDEKGPVNATETRAIHQPAPSFDEQSTSSDILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVHSGYSVFAGVGERTREG 188          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB2_DINSH (ATP synthase subunit beta 2 OS=Dinoroseobacter shibae (strain DFL 12) GN=atpD2 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 6.583e-49
Identity = 106/183 (57.92%), Postives = 123/183 (67.21%), Query Frame = 1
Query:  289 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            G+V QVIGAVVDV+F++ LP IL AL  E++  +LVLEVAQH+GE  VRTIAMD TEGLVRG  V +TG PIT+PVG  TLGRIMN IGEPIDEKG ++      IH+ AP F EQ+T  +ILVTGIKV DLL PY K             K   I E   N+AKV   + VFAG GE  REG
Sbjct:    6 GKVTQVIGAVVDVQFEDTLPEILNALNTENNGKKLVLEVAQHLGENTVRTIAMDATEGLVRGAEVTDTGGPITIPVGNATLGRIMNVIGEPIDEKGPVEASESRAIHQPAPEFSEQSTGSEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVHSGYSVFAGVGERTREG 188          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_JANSC (ATP synthase subunit beta OS=Jannaschia sp. (strain CCS1) GN=atpD PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.123e-48
Identity = 104/185 (56.22%), Postives = 126/185 (68.11%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            ++G++ QVIGAVVDV+F++ LP IL ALE E+   RLVLEVAQH+GEG VRTIAMD +EGLVRGQ V +T  PITVPVG  TLGRI+N +GEP+DE G +  E    IH++AP F +Q+TE ++LVTGIKV DLL PY K             K   I E   N+AKV     VFAG GE  REG
Sbjct:    4 AVGKITQVIGAVVDVQFNDHLPEILNALETENDGKRLVLEVAQHLGEGTVRTIAMDSSEGLVRGQEVTDTDGPITVPVGPGTLGRILNVVGEPVDEGGPVDAEERRGIHQDAPEFADQSTEAEVLVTGIKVVDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVHSGVSVFAGVGERTREG 188          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RHOS5 (ATP synthase subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=atpD PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.915e-48
Identity = 108/185 (58.38%), Postives = 123/185 (66.49%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            S G+V QVIGAVVDV+FD GLP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD TEGLVRG  V + G PI+VPVG  TLGRI+N IGEPIDEKG +  +    IH+ AP F EQ+T  +ILVTGIKV DLL PY K             K   I E   N+AKV   + VFAG GE  REG
Sbjct:    5 SQGKVTQVIGAVVDVQFDGGLPAILNALETVNNDKRLVLEVAQHLGENTVRTIAMDATEGLVRGAPVTDLGGPISVPVGDATLGRILNVIGEPIDEKGPVSGDSTRAIHQPAPTFAEQSTTSEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVHSGYSVFAGVGERTREG 189          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_YEAST (ATP synthase subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=ATP2 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 3.267e-48
Identity = 104/184 (56.52%), Postives = 127/184 (69.02%), Query Frame = 1
Query:  289 GQVCQVIGAVVDVRFDEG-LPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            G+V  VIGA+VDV F++  LP IL ALE++    +LVLEVAQH+GE  VRTIAMDGTEGLVRG++VL+TG PI+VPVGR TLGRI+N IGEPIDE+G +K++   PIH + P+F EQ+T  +IL TGIKV DLL PY +             K   I E   N+AK  G F VF G GE  REG
Sbjct:   44 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREG 227          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_XANP2 (ATP synthase subunit beta OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=atpD PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 3.267e-48
Identity = 107/184 (58.15%), Postives = 123/184 (66.85%), Query Frame = 1
Query:  286 IGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +G++ QVIGAVVDV+FD  LP IL ALE  +   RLVLEVAQH+GE  VR IAMD TEGLVRG  V +TG+PI VPVG  TLGRIMN IGEP+DE G ++ E    IH+ AP++ EQATE +ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    5 VGRITQVIGAVVDVQFDGHLPEILNALETTNQGNRLVLEVAQHLGESTVRCIAMDATEGLVRGLEVTDTGAPIQVPVGAGTLGRIMNVIGEPVDELGPIEAEATRGIHQPAPSYAEQATEAEILVTGIKVVDLLAPYAKGGKVGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 188          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_MAGSA (ATP synthase subunit beta OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=atpD PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 7.278e-48
Identity = 103/185 (55.68%), Postives = 126/185 (68.11%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            ++G + QV+GAVVDVRFD  LP IL+AL +E    +LVLEVAQH+GE  VRTIAMD T+GL RG  V++TG+ I +PVG  TLGRI+N IGEPIDE+G +  +  LPIH +AP FV+Q+TE +ILVTGIKV DLL PY K             K   I E   N+AK  G + VFAG GE  REG
Sbjct:    5 NVGTITQVLGAVVDVRFDGQLPAILSALHLEHQGKKLVLEVAQHLGESTVRTIAMDSTDGLTRGTEVVDTGAAIQMPVGPETLGRIINVIGEPIDERGPIGNKTTLPIHADAPEFVDQSTETEILVTGIKVIDLLAPYCKGGKIGLCGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREG 189          
The following BLAST results are available for this feature:
BLAST of DY258549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_BART12.955e-4954.64ATP synthase subunit beta OS=Bartonella tribocorum... [more]
ATPB_NITHX3.859e-4958.47ATP synthase subunit beta OS=Nitrobacter hamburgen... [more]
ATPB_SPHWW5.040e-4955.72ATP synthase subunit beta OS=Sphingomonas wittichi... [more]
ATPB_SILPO5.040e-4957.92ATP synthase subunit beta OS=Silicibacter pomeroyi... [more]
ATPB2_DINSH6.583e-4957.92ATP synthase subunit beta 2 OS=Dinoroseobacter shi... [more]
ATPB_JANSC1.123e-4856.22ATP synthase subunit beta OS=Jannaschia sp. (strai... [more]
ATPB_RHOS51.915e-4858.38ATP synthase subunit beta OS=Rhodobacter sphaeroid... [more]
ATPB_YEAST3.267e-4856.52ATP synthase subunit beta, mitochondrial OS=Saccha... [more]
ATPB_XANP23.267e-4858.15ATP synthase subunit beta OS=Xanthobacter autotrop... [more]
ATPB_MAGSA7.278e-4855.68ATP synthase subunit beta OS=Magnetospirillum magn... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258549 ID=DY258549; Name=DY258549; organism=Citrus clementina; type=EST; length=1270bp
GTCTCGCGGCATCCATATCCGTGACCAATGGCTTCACGTAGACTCCTAAC
ATCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTT
CTAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTAT
GGGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCAC
TGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTG
GTAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGT
CAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCC
GATTTTGACCGCGCTTGAAGTGGAAGATCACTCGGTTCGGTTAGTGCTTG
AGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGAT
GGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCC
AATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGACA
TTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTG
CCCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACA
GATTCTAGTCACTGGCATCAAGGTCGATGATCTCCTTGGTCCATACCAAA
AAGGAGGGAAAAATGGGCATTTTGGGGGTGCTGGTGAAAGAAAAATAGAG
CCTATCAATGAAACTAATAAAAATGTTGCAAAAGTCCGGGGGGTTTTCCT
AGTTTTTGCCGGGGGTGGAGAGCCTAACCGTGAAGGGAAAATGACCTGTA
ACGGGAAATGATTGAAGAGGGGTGTTATAAGTAAGGGGAAAAGAAGGCTG
AAAATCAAAAGGGGGACTTGGTCAGGACCAAAGGAATGACCCCCCTGTTG
GCTCGGGCCTGGGGGGGCCTAGACGGGCCTAACGGGTGCCCGAGCCCTTC
CGGGAAAGTCTGAGGGGGGAGAAAAAGGCTTCGCTCTCTTCTCCCAAACA
TTTTCCCCTTTCACCCCAACCCAAATCCCAAAAGGGGGCCTGGCTTGGTT
GGGGGGCCGAATCTCCCTCCCGTGGGGGGGGGTACCCCAACCCCCCGCGT
TCGGGTGACGCGGGATATCTGGGGGGGCCCTCCCCCCGCAAGAAGGAGTC
ACCACACACCCCACCACAAGGAAAAAGGGGGGTCTCCACCTCCGCACCTT
CTTTCCGCGTCACTCAAACA
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