DY258549

Overview
NameDY258549
Unique NameDY258549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1270
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_GEOSL (ATP synthase subunit beta OS=Geobacter sulfurreducens GN=atpD PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.341e-46
Identity = 105/191 (54.97%), Postives = 124/191 (64.92%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----EDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            + G++ QVIGAV+DV F+ G LPPI  AL V     +D    LVLEVAQH+GE  VRTIAMD T+GLVRGQ VL+TG  I+VPVGR TLGRI+N IGEP+DE G +  E    IHREAPAFV+Q+T+ +   TGIKV DLL PY +             K   I E   N+AK  G F VFAG GE  REG
Sbjct:    4 NFGKISQVIGAVIDVEFEPGKLPPIYNALRVTNPAIDDKEYNLVLEVAQHLGENAVRTIAMDSTDGLVRGQAVLDTGKQISVPVGRKTLGRILNVIGEPVDEMGPVNAEKEYGIHREAPAFVDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAKQHGGFSVFAGVGERTREG 194          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_SILST (ATP synthase subunit beta OS=Silicibacter sp. (strain TM1040) GN=atpD PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 3.994e-46
Identity = 99/183 (54.10%), Postives = 123/183 (67.21%), Query Frame = 1
Query:  289 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            G+V Q+IGAVVDV+FD  LP IL AL  +++  +LVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI++PVG  TLGRI+N +GEP+DE   +  +    IH+ AP F +Q+TE ++LVTGIKV DLL PY K             K   I E   N+AKV   + VFAG GE  REG
Sbjct:    6 GKVTQIIGAVVDVQFDGELPAILNALTTDNNGKKLVLEVAQHLGENSVRTIAMDATEGLVRGQEVTDTGAPISIPVGNATLGRILNVVGEPVDEGEPIVAKETRAIHQPAPEFNDQSTESEVLVTGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKVHSGYSVFAGVGERTREG 188          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RICFE (ATP synthase subunit beta OS=Rickettsia felis GN=atpD PE=3 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 1.162e-45
Identity = 102/187 (54.55%), Postives = 123/187 (65.78%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR IAMD TEGLVRG  V++TGSPI +PVG  TLGRIMN +GEPID KGD+K+ +   I++ AP F  Q+TE+ ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    4 NIGKITQIISAVVDVKFTNNGELPEILNALECYNDKQRIVLEVAQHIGDDTVRCIAMDSTEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKSAPDFTNQSTERNILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREG 190          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_GEOSF (ATP synthase subunit beta OS=Geobacter sp. (strain FRC-32) GN=atpD PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.162e-45
Identity = 104/191 (54.45%), Postives = 125/191 (65.45%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----EDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG++ QVIGAV+DV F+ G LPPI  AL V     +D+   LVLEVAQH+GE  VRTIAMD T+GLVRGQ VL+TG  I+VPVGR TLGRI+N IGEP+DE G +  +    IHREAP FV+Q+T+ +   TGIKV DLL PY +             K   I E   N+AK  G F VFAG GE  REG
Sbjct:    4 NIGKISQVIGAVIDVEFEPGKLPPIYNALRVTNPAIDDNENNLVLEVAQHLGENSVRTIAMDSTDGLVRGQAVLDTGKQISVPVGRKTLGRILNVIGEPVDEMGPVNADKEYGIHREAPEFVDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAKQHGGFSVFAGVGERTREG 194          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RICM5 (ATP synthase subunit beta OS=Rickettsia massiliae (strain Mtu5) GN=atpD PE=3 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 1.518e-45
Identity = 102/187 (54.55%), Postives = 123/187 (65.78%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR IAMD TEGLVRG  V++TGSPI +PVG  TLGRIMN +GEPID KGD+K+ +   I++ AP F  Q+TE+ ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    4 NIGKITQIISAVVDVKFTNNGELPEILNALECYNDKQRIVLEVAQHIGDDTVRCIAMDSTEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTNQSTERNILVTGIKVIDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREG 190          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RICAH (ATP synthase subunit beta OS=Rickettsia akari (strain Hartford) GN=atpD PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.982e-45
Identity = 102/187 (54.55%), Postives = 123/187 (65.78%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR IAMD TEGLVRG  V++TGSPI +PVG  TLGRIMN +GEPID KGD+K+ +   I++ AP F  Q+TE+ ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    4 NIGKITQIISAVVDVKFTNNGELPEILNALECYNDKQRIVLEVAQHIGDDTVRCIAMDSTEGLVRGVEVMDTGSPICIPVGTETLGRIMNVVGEPIDGKGDIKSSNISAIYKSAPDFTNQSTERNILVTGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREG 190          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_GRABC (ATP synthase subunit beta OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=atpD PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.243e-45
Identity = 99/185 (53.51%), Postives = 117/185 (63.24%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            ++G+V Q++GAVVDV+FD  LP I  AL+       L+LEVAQ +GE  VR IAMD T+GLVRG  V + G PITVPVG  TLGRI+N IGEPIDE+G +  +    IHREAP+F EQA   +ILVTGIKV DLL PY K             K   I E   N+AK  G   VFAG GE  REG
Sbjct:    5 NVGRVTQILGAVVDVQFDGELPFIQNALQTRIGDRTLILEVAQELGERTVRAIAMDSTDGLVRGAEVEDLGRPITVPVGPGTLGRILNVIGEPIDERGPVDAKKTYSIHREAPSFEEQAASAEILVTGIKVVDLLAPYLKGGKIGLFGGAGVGKTVLIQELINNIAKAHGGVSVFAGVGERTREG 189          

HSP 2 Score: 28.8758 bits (63), Expect = 2.243e-45
Identity = 20/46 (43.48%), Postives = 22/46 (47.83%), Query Frame = 3
Query:  840 NDL*REMIEEGCYK*GEKKAENQKGDLVRTKGMTPLLARAWGGLDG 977
            NDL  EMI+ G  K GE   E  K  LV  +   P  ARA   L G
Sbjct:  190 NDLYHEMIDAGVIKLGENTTEGSKVALVYGQMNEPPGARARVALSG 235          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_DESVM (ATP synthase subunit beta OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=atpD PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 2.589e-45
Identity = 101/190 (53.16%), Postives = 127/190 (66.84%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVED----HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG++ QVIGAVVDV F  G LP IL+AL++++     + +LV EVAQH+G+ VVRTIAMD TEGLVRG   ++TG PI VPVG+ +LGRIMN +G P+DE G +KT+ YLPIHR AP F EQ T+ ++L TGIKV DLL P+ K             K   + E   N+AK  G   VFAG GE  REG
Sbjct:    4 NIGKIVQVIGAVVDVEFPSGNLPNILSALDIKNPNNSDAPQLVCEVAQHLGDNVVRTIAMDATEGLVRGMEAVDTGKPIMVPVGKASLGRIMNVVGRPVDEMGPIKTDKYLPIHRPAPEFTEQNTKVELLETGIKVVDLLIPFPKGGKMGLFGGAGVGKTVILMEMINNIAKQHGGISVFAGVGERTREG 193          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_GEOMG (ATP synthase subunit beta OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=atpD PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 5.767e-45
Identity = 102/191 (53.40%), Postives = 123/191 (64.40%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----EDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            + G++ QVIGAV+DV F+ G LPPI  AL V     +D    LVLEVAQH+GE  VRTIAMD T+GLVRGQ  L+TG  I+VPVGR TLGRI+N IGEP+DE G +  E    IHRE+P+FV+Q+T+ +   TGIKV DLL PY +             K   I E   N+AK  G F VFAG GE  REG
Sbjct:    4 NFGRISQVIGAVIDVEFEPGKLPPIYNALRVTNPAIDDKEYNLVLEVAQHLGENSVRTIAMDSTDGLVRGQAALDTGKQISVPVGRKTLGRILNVIGEPVDEMGPVNAEKEYGIHRESPSFVDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAKQHGGFSVFAGVGERTREG 194          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RICPU (ATP synthase subunit beta OS=Rickettsia peacockii (strain Rustic) GN=atpD PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.532e-45
Identity = 101/187 (54.01%), Postives = 122/187 (65.24%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR IAMD  EGLVRG  V++TGSPI +PVG  TLGRIMN +GEPID KGD+K+ +   I++ AP F  Q+TE+ ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    4 NIGKITQIISAVVDVKFTNNSELPEILNALECYNDKQRIVLEVAQHIGDDTVRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTNQSTERNILVTGIKVIDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREG 190          
The following BLAST results are available for this feature:
BLAST of DY258549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_GEOSL2.341e-4654.97ATP synthase subunit beta OS=Geobacter sulfurreduc... [more]
ATPB_SILST3.994e-4654.10ATP synthase subunit beta OS=Silicibacter sp. (str... [more]
ATPB_RICFE1.162e-4554.55ATP synthase subunit beta OS=Rickettsia felis GN=a... [more]
ATPB_GEOSF1.162e-4554.45ATP synthase subunit beta OS=Geobacter sp. (strain... [more]
ATPB_RICM51.518e-4554.55ATP synthase subunit beta OS=Rickettsia massiliae ... [more]
ATPB_RICAH1.982e-4554.55ATP synthase subunit beta OS=Rickettsia akari (str... [more]
ATPB_GRABC2.243e-4553.51ATP synthase subunit beta OS=Granulibacter bethesd... [more]
ATPB_DESVM2.589e-4553.16ATP synthase subunit beta OS=Desulfovibrio vulgari... [more]
ATPB_GEOMG5.767e-4553.40ATP synthase subunit beta OS=Geobacter metalliredu... [more]
ATPB_RICPU7.532e-4554.01ATP synthase subunit beta OS=Rickettsia peacockii ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258549 ID=DY258549; Name=DY258549; organism=Citrus clementina; type=EST; length=1270bp
GTCTCGCGGCATCCATATCCGTGACCAATGGCTTCACGTAGACTCCTAAC
ATCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTT
CTAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTAT
GGGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCAC
TGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTG
GTAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGT
CAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCC
GATTTTGACCGCGCTTGAAGTGGAAGATCACTCGGTTCGGTTAGTGCTTG
AGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGAT
GGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCC
AATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGACA
TTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTG
CCCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACA
GATTCTAGTCACTGGCATCAAGGTCGATGATCTCCTTGGTCCATACCAAA
AAGGAGGGAAAAATGGGCATTTTGGGGGTGCTGGTGAAAGAAAAATAGAG
CCTATCAATGAAACTAATAAAAATGTTGCAAAAGTCCGGGGGGTTTTCCT
AGTTTTTGCCGGGGGTGGAGAGCCTAACCGTGAAGGGAAAATGACCTGTA
ACGGGAAATGATTGAAGAGGGGTGTTATAAGTAAGGGGAAAAGAAGGCTG
AAAATCAAAAGGGGGACTTGGTCAGGACCAAAGGAATGACCCCCCTGTTG
GCTCGGGCCTGGGGGGGCCTAGACGGGCCTAACGGGTGCCCGAGCCCTTC
CGGGAAAGTCTGAGGGGGGAGAAAAAGGCTTCGCTCTCTTCTCCCAAACA
TTTTCCCCTTTCACCCCAACCCAAATCCCAAAAGGGGGCCTGGCTTGGTT
GGGGGGCCGAATCTCCCTCCCGTGGGGGGGGGTACCCCAACCCCCCGCGT
TCGGGTGACGCGGGATATCTGGGGGGGCCCTCCCCCCGCAAGAAGGAGTC
ACCACACACCCCACCACAAGGAAAAAGGGGGGTCTCCACCTCCGCACCTT
CTTTCCGCGTCACTCAAACA
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