DY258549

Overview
NameDY258549
Unique NameDY258549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1270
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RICRS (ATP synthase subunit beta OS=Rickettsia rickettsii (strain Sheila Smith) GN=atpD PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 9.837e-45
Identity = 101/187 (54.01%), Postives = 123/187 (65.78%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG++ Q+I AVVDV+F     LP IL ALE  + + R+VLEVAQH+G+  VR IAMD  EGLVRG  V++TGSPI +PVG  TLGRIMN +GEPID KGD+K+ +   I++ AP F  Q+TE+ ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    4 NIGKITQIISAVVDVKFTNNGKLPEILNALECYNDTRRVVLEVAQHIGDDTVRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTNQSTERNILVTGIKVIDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREG 190          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RICRO (ATP synthase subunit beta OS=Rickettsia rickettsii (strain Iowa) GN=atpD PE=3 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 9.837e-45
Identity = 101/187 (54.01%), Postives = 123/187 (65.78%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG++ Q+I AVVDV+F     LP IL ALE  + + R+VLEVAQH+G+  VR IAMD  EGLVRG  V++TGSPI +PVG  TLGRIMN +GEPID KGD+K+ +   I++ AP F  Q+TE+ ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    4 NIGKITQIISAVVDVKFTNNGKLPEILNALECYNDTRRVVLEVAQHIGDDTVRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTNQSTERNILVTGIKVIDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREG 190          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RICAE (ATP synthase subunit beta OS=Rickettsia africae (strain ESF-5) GN=atpD PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 9.837e-45
Identity = 101/187 (54.01%), Postives = 122/187 (65.24%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR IAMD  EGLVRG  V++TGSPI +PVG  TLGRIMN +GEPID KGD+K+ +   I++ AP F  Q+TE+ ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    4 NIGKITQIISAVVDVKFTNNGELPEILNALECYNDKHRIVLEVAQHIGDDTVRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTNQSTERNILVTGIKVIDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREG 190          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_ALKOO (ATP synthase subunit beta OS=Alkaliphilus oremlandii (strain OhILAs) GN=atpD PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 9.837e-45
Identity = 99/204 (48.53%), Postives = 130/204 (63.73%), Query Frame = 1
Query:  277 KGSIGQVCQVIGAVVDVRFD-EGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREGKMTCNGK*LKRGVISK 885
            +G++G++ Q+IG V+D+RF  E LP +L A+E+E    ++V+EV+QH+G+  VR +AM  T+GLVRG    +TG PITVPVGR TLGRI N IGEP+DEKG +  E   PIHR AP+F +QAT  +IL TGIKV DL+ PY K             K   I E   N+AK  G   VF+G GE  REG    N + ++ GVI K
Sbjct:    3 EGNVGKLVQIIGPVIDIRFSRENLPNLLNAIEIEGPDGKIVVEVSQHIGDDTVRCVAMKSTDGLVRGMEAKDTGGPITVPVGRATLGRIFNVIGEPVDEKGAVAAEAKAPIHRPAPSFEDQATSTEILETGIKVVDLIAPYLKGGKIGLFGGAGVGKTVLIMELINNIAKEHGGLSVFSGVGERTREGNDLYN-EMIESGVIDK 205          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RICPR (ATP synthase subunit beta OS=Rickettsia prowazekii GN=atpD PE=3 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 1.285e-44
Identity = 100/187 (53.48%), Postives = 123/187 (65.78%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG++ QVI AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR IAMD TEGL+RG  V++TG+PI +PVG  TLGRIMN +GEPID KG++K+     I++ AP F+ Q+TE+ ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    4 NIGKITQVISAVVDVKFTNNGKLPEILNALECYNDKQRIVLEVAQHIGDDTVRCIAMDSTEGLIRGLEVIDTGNPIRIPVGTETLGRIMNVVGEPIDGKGEIKSATISSIYKPAPDFINQSTERDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREG 190          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_GEOUR (ATP synthase subunit beta OS=Geobacter uraniireducens (strain Rf4) GN=atpD PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.678e-44
Identity = 102/191 (53.40%), Postives = 124/191 (64.92%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVEDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG++ QVIGAV+DV F+ G LPPI  AL V + S+      LVLEVAQH+GE  VRTIAMD T+GLVRGQ  ++TG  I+VPVGR TLGRI+N IG+P+DE G +  E    IHREAPAFV+Q+T+ +   TGIKV DLL PY +             K   I E   N+A   G F VFAG GE  REG
Sbjct:    4 NIGKISQVIGAVIDVEFEPGKLPPIYNALRVTNPSIDDKENNLVLEVAQHLGENSVRTIAMDSTDGLVRGQAAIDTGKQISVPVGRKTLGRILNVIGDPVDEMGPVGAEKEYGIHREAPAFVDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAMQHGGFSVFAGVGERTREG 194          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_GEOSM (ATP synthase subunit beta OS=Geobacter sp. (strain M21) GN=atpD PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.678e-44
Identity = 102/191 (53.40%), Postives = 122/191 (63.87%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----EDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            + G++ QVIGAV+DV F+ G LPPI  AL V     +D    LVLEVAQH+GE  VRTIAMD T+GLVRGQ+V + G  I+VPVG+ TLGRI+N IGEP+DE G +  E    IHREAPAFV Q+T+ +   TGIKV DLL PY +             K   I E   N+AK  G F VFAG GE  REG
Sbjct:    4 NFGKISQVIGAVIDVEFEPGKLPPIYQALRVTNPAIDDQEFNLVLEVAQHLGENAVRTIAMDSTDGLVRGQQVKDMGKQISVPVGKKTLGRILNVIGEPVDEMGPIGNEKEYGIHREAPAFVNQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAKQHGGFSVFAGVGERTREG 194          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_RICCN (ATP synthase subunit beta OS=Rickettsia conorii GN=atpD PE=3 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 2.191e-44
Identity = 101/187 (54.01%), Postives = 121/187 (64.71%), Query Frame = 1
Query:  283 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR IAMD  EGLVRG  V++TGSPI +PVG  TLGRIMN +GEPID KGD+K+ +   I++ AP F  Q+TE  ILVTGIKV DLL PY K             K   I E   NVAK  G + VFAG GE  REG
Sbjct:    4 NIGKITQIISAVVDVKFTNNGELPKILNALECYNDKQRIVLEVAQHIGDDTVRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTHQSTECNILVTGIKVIDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYTVFAGVGERTREG 190          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_FUSNN (ATP synthase subunit beta OS=Fusobacterium nucleatum subsp. nucleatum GN=atpD PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.862e-44
Identity = 99/199 (49.75%), Postives = 124/199 (62.31%), Query Frame = 1
Query:  289 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREGKMTCNGK*LKRGVISK 885
            G + Q+I AVVD+ F + LP I  AL+V+     LVLEV QH+G  VVRT+AMD T+GL RG  V++TG PIT+PVG+  LGRI+N +GEP+D +G L  E +LPIHREAP F +  TE +I  TGIKV DLL PY K             K   I E   N+AK  G   VFAG GE  REG+    G+  + GVI+K
Sbjct:    4 GTITQIISAVVDIAFKDELPAIYNALKVKLEDKELVLEVEQHLGNNVVRTVAMDSTDGLKRGMEVIDTGKPITIPVGKAVLGRILNVLGEPVDNQGPLNAETFLPIHREAPEFDDLETETEIFETGIKVIDLLAPYIKGGKIGLFGGAGVGKTVLIMELINNIAKGHGGISVFAGVGERTREGR-DLYGEMTESGVITK 201          
BLAST of DY258549 vs. ExPASy Swiss-Prot
Match: ATPB_CAUCR (ATP synthase subunit beta OS=Caulobacter crescentus GN=atpD PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.862e-44
Identity = 98/189 (51.85%), Postives = 123/189 (65.08%), Query Frame = 1
Query:  277 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVDDLLGPYQKXXXXXXXXXXXERKIEPINETNKNVAKVRGVFLVFAGGGEPNREG 837
            +G+ G++ Q+IGAVVD+ FD  LP IL A+E  + +   RLV EVAQH+G+  VR IAMD TEGLVRGQ V +TG PI VPVG  TLGRIMN IGEPIDE+G ++++    IHR+AP+F EQ    ++LVTGIKV DL+ PY K             K   + E   N+AK  G + V AG GE  REG
Sbjct:   61 EGATGRLVQIIGAVVDIEFDGALPAILNAVETVNTATGQRLVFEVAQHLGQSTVRAIAMDATEGLVRGQPVRDTGEPIRVPVGPGTLGRIMNVIGEPIDEQGPIRSDISRTIHRDAPSFAEQTNTAEVLVTGIKVIDLMCPYTKGGKIGLFGGAGVGKTVTMQELINNIAKAYGGYSVLAGVGERTREG 249          
The following BLAST results are available for this feature:
BLAST of DY258549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RICRS9.837e-4554.01ATP synthase subunit beta OS=Rickettsia rickettsii... [more]
ATPB_RICRO9.837e-4554.01ATP synthase subunit beta OS=Rickettsia rickettsii... [more]
ATPB_RICAE9.837e-4554.01ATP synthase subunit beta OS=Rickettsia africae (s... [more]
ATPB_ALKOO9.837e-4548.53ATP synthase subunit beta OS=Alkaliphilus oremland... [more]
ATPB_RICPR1.285e-4453.48ATP synthase subunit beta OS=Rickettsia prowazekii... [more]
ATPB_GEOUR1.678e-4453.40ATP synthase subunit beta OS=Geobacter uraniireduc... [more]
ATPB_GEOSM1.678e-4453.40ATP synthase subunit beta OS=Geobacter sp. (strain... [more]
ATPB_RICCN2.191e-4454.01ATP synthase subunit beta OS=Rickettsia conorii GN... [more]
ATPB_FUSNN2.862e-4449.75ATP synthase subunit beta OS=Fusobacterium nucleat... [more]
ATPB_CAUCR2.862e-4451.85ATP synthase subunit beta OS=Caulobacter crescentu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258549 ID=DY258549; Name=DY258549; organism=Citrus clementina; type=EST; length=1270bp
GTCTCGCGGCATCCATATCCGTGACCAATGGCTTCACGTAGACTCCTAAC
ATCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTT
CTAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTAT
GGGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCAC
TGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTG
GTAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGT
CAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCC
GATTTTGACCGCGCTTGAAGTGGAAGATCACTCGGTTCGGTTAGTGCTTG
AGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGAT
GGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCC
AATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGACA
TTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTG
CCCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACA
GATTCTAGTCACTGGCATCAAGGTCGATGATCTCCTTGGTCCATACCAAA
AAGGAGGGAAAAATGGGCATTTTGGGGGTGCTGGTGAAAGAAAAATAGAG
CCTATCAATGAAACTAATAAAAATGTTGCAAAAGTCCGGGGGGTTTTCCT
AGTTTTTGCCGGGGGTGGAGAGCCTAACCGTGAAGGGAAAATGACCTGTA
ACGGGAAATGATTGAAGAGGGGTGTTATAAGTAAGGGGAAAAGAAGGCTG
AAAATCAAAAGGGGGACTTGGTCAGGACCAAAGGAATGACCCCCCTGTTG
GCTCGGGCCTGGGGGGGCCTAGACGGGCCTAACGGGTGCCCGAGCCCTTC
CGGGAAAGTCTGAGGGGGGAGAAAAAGGCTTCGCTCTCTTCTCCCAAACA
TTTTCCCCTTTCACCCCAACCCAAATCCCAAAAGGGGGCCTGGCTTGGTT
GGGGGGCCGAATCTCCCTCCCGTGGGGGGGGGTACCCCAACCCCCCGCGT
TCGGGTGACGCGGGATATCTGGGGGGGCCCTCCCCCCGCAAGAAGGAGTC
ACCACACACCCCACCACAAGGAAAAAGGGGGGTCTCCACCTCCGCACCTT
CTTTCCGCGTCACTCAAACA
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