DY258554

Overview
NameDY258554
Unique NameDY258554
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258554_ssr305 microsatellite DY258554_ssr305:305..316. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10112 contig Ccv1_Contig10112:505..977. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PER1_WHEAT (Peroxidase OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.599e-19
Identity = 47/92 (51.09%), Postives = 59/92 (64.13%), Query Frame = 3
Query:    6 GNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 281
            G    LAN D  TP+AFDN Y++NL  +KGLL SDQ LF+    D    V +F  N  AF   F  +MI+MGN+ PLTG QG+IRL+C +VN
Sbjct:  222 GGNTNLANLDTMTPNAFDNAYYTNLLSQKGLLHSDQVLFNNETTDNT--VRNFASNAAAFSSAFTTAMIKMGNIAPLTGTQGQIRLSCSKVN 311          
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PER2_ORYSI (Peroxidase 2 OS=Oryza sativa subsp. indica GN=PRX112 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 8.019e-19
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = 3
Query:    3 GGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 281
            G   + LA  D  TP+AFD+ Y++NL   KGLL SDQ LF+  G  T   V +F  N  AF   F ++M++MGN+ PLTG QG+IRLNC +VN
Sbjct:  224 GSGDSNLAPLDTTTPNAFDSAYYTNLLSNKGLLHSDQVLFN--GGSTDNTVRNFSSNTAAFNSAFTVAMVKMGNISPLTGTQGQIRLNCSKVN 314          
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PER2_ORYSJ (Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PRX112 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.333e-18
Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 3
Query:    3 GGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 281
            G   + LA  D  TP+AFD+ Y++NL   KGLL SDQ LF+  G  T   V +F  N  AF   F  +M++MGN+ PLTG QG+IRLNC +VN
Sbjct:  224 GSGDSNLAPLDTTTPNAFDSAYYTNLLSNKGLLHSDQVLFN--GGSTDNTVRNFSSNTAAFNSAFTAAMVKMGNISPLTGTQGQIRLNCSKVN 314          
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PER1_ARAHY (Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 3.980e-18
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 3
Query:    6 GNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 281
            G    L+ FDV TP+ FDN Y+ NLR +KGLL SDQ+LF+  G  T + V  +  N   F  +F  +MI+MGNL PLTG  G+IR NCR+ N
Sbjct:  227 GGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQQLFN--GVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 316          
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PER5_ARATH (Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 5.197e-18
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 3
Query:    3 GGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 281
            GG+G  LA  D+ TP++FDN Y+ NL  +KGLL +DQ LF + GA T  IV ++ +N++ F  +F  +MI+MGN++PLTG+ GEIR  C  VN
Sbjct:  231 GGDGN-LAALDLVTPNSFDNNYYKNLMQKKGLLVTDQVLFGS-GASTDGIVSEYSKNRSKFAADFATAMIKMGNIEPLTGSNGEIRKICSFVN 321          
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PER1_HORVU (Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.788e-18
Identity = 45/93 (48.39%), Postives = 57/93 (61.29%), Query Frame = 3
Query:    3 GGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 281
            G     LAN D  T + FDN Y++NL  +KGLL SDQ LF+    D    V +F  N  AF  +F  +MI+MGN+ P TG QG+IRL+C RVN
Sbjct:  224 GSGDGSLANLDTTTANTFDNAYYTNLMSQKGLLHSDQVLFNNDTTDNT--VRNFASNPAAFSSSFTTAMIKMGNIAPKTGTQGQIRLSCSRVN 314          
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PER72_ARATH (Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.512e-17
Identity = 47/92 (51.09%), Postives = 57/92 (61.96%), Query Frame = 3
Query:    6 GNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 281
            G    L   D  TP  FDN YF NL + KGLL SD+ LF T    +  +VE +  NQ AFF+ F  SM++MGN+ PLTG +GEIR  CRRVN
Sbjct:  243 GGDQTLFFLDFATPFKFDNHYFKNLIMYKGLLSSDEILF-TKNKQSKELVELYAENQEAFFEQFAKSMVKMGNISPLTGAKGEIRRICRRVN 333          
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PER36_ARATH (Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.975e-17
Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = 3
Query:    6 GNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 281
            GN   L N D  TP  FDN Y+ NL   +GLL SD+ LF T   +T  +V+ +  N+ AFF+ F  SM++MGN+ PLTG  GEIR  CRRVN
Sbjct:  251 GNDQNLFNLDYVTPTKFDNYYYKNLVNFRGLLSSDEILF-TQSIETMEMVKYYAENEGAFFEQFAKSMVKMGNISPLTGTDGEIRRICRRVN 341          
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PER70_MAIZE (Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.579e-17
Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 3
Query:    6 GNG-AVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 281
            GNG   LA  D  TP AFDN Y++NL  ++GLL SDQ+LF+  G  T  +V  +      F ++F  +MIRMGN+ PLTG QG+IR  C RVN
Sbjct:  231 GNGDGNLAPLDTATPTAFDNAYYTNLLAQRGLLHSDQQLFN--GGATDGLVRTYASTPRRFSRDFAAAMIRMGNISPLTGTQGQIRRACSRVN 321          
BLAST of DY258554 vs. ExPASy Swiss-Prot
Match: PER4_ARATH (Peroxidase 4 OS=Arabidopsis thaliana GN=PER4 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.369e-17
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 3
Query:    6 GNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 281
            G    LA  D  TP++FDN Y+ NL  +KGLL+SDQ LF T GA T +IV ++ RN + F  +F  +MI+MG+++ LTG+ G+IR  C  VN
Sbjct:  225 GGDTTLAPLDQVTPNSFDNNYYRNLMQKKGLLESDQVLFGT-GASTDSIVTEYSRNPSRFASDFSAAMIKMGDIQTLTGSDGQIRRICSAVN 315          
The following BLAST results are available for this feature:
BLAST of DY258554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
PER1_WHEAT3.599e-1951.09Peroxidase OS=Triticum aestivum PE=2 SV=1[more]
PER2_ORYSI8.019e-1949.46Peroxidase 2 OS=Oryza sativa subsp. indica GN=PRX1... [more]
PER2_ORYSJ2.333e-1849.46Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PR... [more]
PER1_ARAHY3.980e-1850.00Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 ... [more]
PER5_ARATH5.197e-1849.46Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=2 ... [more]
PER1_HORVU6.788e-1848.39Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1[more]
PER72_ARATH1.512e-1751.09Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=... [more]
PER36_ARATH1.975e-1750.00Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=... [more]
PER70_MAIZE2.579e-1749.46Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1[more]
PER4_ARATH3.369e-1747.83Peroxidase 4 OS=Arabidopsis thaliana GN=PER4 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BD09FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258554 ID=DY258554; Name=DY258554; organism=Citrus clementina; type=EST; length=473bp
AGGGTGGAAACGGCGCCGTTCTTGCTAATTTTGATGTCAAAACACCTGAT
GCTTTCGACAACAAATACTTCTCCAATCTTAGACTCCGCAAAGGCCTTCT
GCAGAGTGATCAAGAGTTGTTTTCGACTCCTGGTGCCGATACCGCTGCCA
TTGTCGAGGACTTTGGGAGGAACCAGACTGCTTTCTTTAAAAACTTTGTG
ATCTCAATGATAAGAATGGGCAATTTGAAACCACTGACAGGAAATCAAGG
GGAGATTAGATTGAACTGCAGGAGGGTCAATGGAAACAATAATATTGCAA
CAAGATCATCATCATCGGAGGGTGATTTGGTCAGCTCTTTCTAATAAGCT
AGCTTGCGGCATATGCGAGAGAGTTTTTGTGCTTAACAAACTCGAATTTA
ATCTTATCGTTTGGCCTGAAACATGTTATGTGTTTTCAAATAAATTAACT
ATCAAACTTGAGTTTAAAAAAAA
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