DY258572

Overview
NameDY258572
Unique NameDY258572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1253
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258572 vs. ExPASy Swiss-Prot
Match: HUTH_THEAC (Probable histidine ammonia-lyase OS=Thermoplasma acidophilum GN=hutH PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.513e-17
Identity = 73/271 (26.94%), Postives = 128/271 (47.23%), Query Frame = 1 
Query:    1 GLALVYGTAVGSGLASMVLFEANNLALLSEILSAIFA-EVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAID 810
            G+AL+ GT+  SG+ S+ + +A+++ L + I SA+ + E + G  +         + H GQ+         L GS  V  A  +          QD Y LR  PQ  G   +VI +    +  EINS  DNPL   +  + + GGNF G P+ ++ D   +A+  +G ++  + + LV D   +GLP  L+   +  L+ G+   +   A+ C+  + LA P +        + +D  S+G   S K  E +D ++ + +   +   QA++
Sbjct:  189 GVALINGTSFMSGILSIAVMDAHDI-LENAIRSALLSFEALGGTSKAFTPWILGARPHLGQVAIGNRFREYLTGSDIVKRADSVKV--------QDAYTLRCIPQVYGSVADVIDYVENVLSVEINSATDNPLF--NGEEVVSGGNFHGEPVALAADFLAIALTDLGNMVERRIARLV-DTNLSGLPPFLT--PDSGLNSGYMIPQYTAAALCNRNKVLAYPSSADTIPTSANQEDHVSMGATGSLKLLEIIDNVRYIIAIEYLLGSQALE 445
The following BLAST results are available for this feature:
BLAST of DY258572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
HUTH_THEAC6.513e-1726.94Probable histidine ammonia-lyase OS=Thermoplasma a... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2BG05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258572 ID=DY258572; Name=DY258572; organism=Citrus clementina; type=EST; length=1253bp
GGTCTTGCTCTTGTCTATGGCACTGCTGTTGGTTCTGGCCTGGCTTCTAT
GGTTCTGTTTGAGGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCAG
CTATTTTTGCTGAAGTCATGCAAGGCAAACCTGAGTTCACCGATCACTTG
ACACACAAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAAT
GGAACATATCCTCGATGGCAGCTCTTATGTTAACGTGGCTAAGAAGTTGC
ATGAGATTGATCCTCTGCAGAAGCCGAAACAGGATCGTTATGCCCTGAGA
ACTTCACCACAATGGCTCGGCCCTCAGATCGAAGTGATTCGGTTTGCAAC
CAAGTCTATTGAACGGGAGATCAACTCGGTGAATGACAATCCCCTGATCG
ACGTTTCAAGGAACAAGGCCTTACATGGTGGCAATTTTCAGGGGACCCCA
ATTGGTGTCTCAATGGACAATACCCGTTTGGCTATTGCGGCAATAGGGAA
GCTCATGTTTGCCCAATTTTCTGAACTTGTCAACGATTTTTACAACAATG
GATTGCCGTCAAATCTGTCTGGTGGCAGGAATCCTAGCCTGGATTATGGT
TTCAAGGGCGCTGAAATTGCTATGGCTTCCTATTGTTCGGAGCTCCAATT
TCTTGCCAATCCTGTTACTAACCACGTCCAAAGTGCTGAACAGCACAACC
AAGATGTAAACTCCTTGGGATTGATCTCTTCCAGGAAGACTGCTGAAGCA
GTCGACATCCTGAAGCTCATGTCTTCCACATTCTTGGTAGCGCTTTGCCA
GGCTATTGATTTGAGACATTTGGAGGAAAATTTGAAGCATACAGTCAAAA
ATACTGTCAGCCAAGTAGCTAAAAAGTTCTAACCGTCCGTGCTAGTGGAA
AGCTTCTTCCCTCAAGATTCTGTGAAAAAGATCTGGCTCAAAACGGCTGA
TCCCCAACACTTCTTTGCATAATTTTAGGAACCCTGGCCATGCTTCCCTA
TCCCTTTATTCCAAAGCCAAAGGCAAGTACTTTGTTGACCCCCCACCTAA
ACAAAGGGAAAAAAACAAAAAAAAACTGCCCAACTCCTTCAATCTTTCCC
AAAAAAATTTCCCCCCTTTTAAGAAAGAAAATTTAAAAAACCTTTTTTTT
TCCCAAAAAAAAATTTTGAAAAAAAGCGCCCAGGCAAAAAAAAATGTTTT
GTAAAAAAAAGAGAAAAAAATTTCCACACACAACATTTCTCTCCCCCAAA
CAG
back to top