DY258595

Overview
NameDY258595
Unique NameDY258595
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258595_ssr539 microsatellite DY258595_ssr539:539..554. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1178 contig Ccv1_Contig1178:1..1291. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258595 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.674e-15
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  118 VSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKL 366
            + SN +V+FSK+YC YC R K +  QL     VVELD   DG +IQ  L E+ G+RTVP VF+ GKHIGG D +    + G+L
Sbjct:   41 ILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQL 123          
BLAST of DY258595 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.085e-14
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1
Query:  118 VSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKL 366
            + SN + +FSKTYC Y  R K + + L  +  +VELD+  DG +IQ+ L +  G+ TVP VF+ G+H+GG D     H  G+L
Sbjct:   38 IYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQL 120          
BLAST of DY258595 vs. ExPASy Swiss-Prot
Match: GLRX1_YEAST (Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.955e-13
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1
Query:   97 LNKAKEIVSSNPVVVFSKTYCGYC----TRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKL 366
            +   K++++ N + V SKTYC YC      + E LK   +   V++L+   +G+ IQAAL E  GQRTVPN++I GKHIGG D + E  + G+L
Sbjct:    7 IKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGEL 100          
BLAST of DY258595 vs. ExPASy Swiss-Prot
Match: GLRX2_YEAST (Glutaredoxin-2, mitochondrial OS=Saccharomyces cerevisiae GN=GRX2 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.467e-11
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 1
Query:  109 KEIVSSNPVVVFSKTYCGYC-TRVKELLKQLG---TSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVIEKHQGGKL 366
            K+++    V V +KTYC YC   +  L ++L    +   V+ELD  S+GS+IQ AL E +GQ+TVPNV+I GKHIGG   +    + GKL
Sbjct:   45 KDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKL 134          
BLAST of DY258595 vs. ExPASy Swiss-Prot
Match: GLRX1_SCHPO (Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.502e-11
Identity = 31/70 (44.29%), Postives = 49/70 (70.00%), Query Frame = 1
Query:  118 VSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGG 327
            V+ N VVVF+K+YC YC   ++++       +V ++D+ ++G +IQ+ L + TGQRTVPN+FI  KH+GG
Sbjct:   12 VADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGG 81          
The following BLAST results are available for this feature:
BLAST of DY258595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
GRXC3_ARATH1.674e-1549.40Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]
GRXS6_ORYSJ1.085e-1442.17Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GLRX1_YEAST5.955e-1342.55Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1... [more]
GLRX2_YEAST1.467e-1144.44Glutaredoxin-2, mitochondrial OS=Saccharomyces cer... [more]
GLRX1_SCHPO2.502e-1144.29Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CB08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258595 ID=DY258595; Name=DY258595; organism=Citrus clementina; type=EST; length=1290bp
ACAATACCAAACAACAAAGGAAAGGATCGAAAACTAAAATCAAGTCAAAT
GGGTTTATTTCAAAACAAAATAAGCAAAGAAGAGCTTGAAATCGCGCTTA
ACAAGGCCAAGGAAATCGTCTCCTCCAATCCCGTCGTCGTCTTCAGCAAA
ACCTACTGTGGTTATTGTACAAGGGTGAAGGAGTTGCTTAAACAGCTTGG
AACGAGTTTCAAAGTCGTAGAATTGGATATTGAAAGTGATGGAAGTAAAA
TTCAAGCAGCTCTGGCAGAGTGGACTGGGCAGAGAACCGTACCCAATGTG
TTCATTGGGGGAAAACACATCGGTGGCTGCGACACTGTAATAGAGAAGCA
CCAAGGAGGAAAGCTGGTCCCCCTTCTTCGTGATGCCGGTGCCCTCGCCC
TTGCTGACAAATGATAATTTTGCTCCGTTAAGATCAGAACCACAAGTTCG
TGTACATGGGCTGAAGTGAAGAAATGCAACAATATTAAAGTGACCAATTA
TATGGTGTGTAAAAGTAACAATCGATGTCCACTTTATTTGTGTGTGTGTG
TGTGTTTTATAGACATTTCTCTGCTTGATTGTAAAGTAAAATGAGAGATA
TGCATGCGGTGCTGCTCTCTGTATAAGGAGGGAAGCATTCGACCGGGAAG
CGGCTTCAGAGGTTTGTATTGTTGGTGAGACACCAACTAGCGCCTCTGGT
TCATTCACATTTTATCGCAACCGGCAACGCTGGCTTTCAAGTTCAACTAG
CATGCGGTAGAAAAGTTAGTTGCATATTTATATATCACGAAAAGAAAAGA
GCATGATCAGTTTCTTCTCTGTAATTTACTTCTATTACCTTTTAGGATAC
ATCTCTTTTTCATGTTTAAATGAGGGAGGATTATTTGTACCCCAGGGGAA
AGGGCGCTCTTCAATCCCATATTTTTCCTAAAAAAAAAAAAAAAAAAAAA
ACCCCATTTCCTTGCACAAAATTGGGCTTTAAAAAAAAACGTTTGGCTTA
TAAATTTGTTTGCACCGAAAAAGGTCCACTTCCCGTCAAAAAAAAAATCA
TTTATTTGGCCTTTCCCCCCTGAAAATCCCCCCAAAAGGGGAGTCTTTTT
AAAAGGGGCCCAATTCTTGTTTTCCTGGGCGACACCTGGGCCGCCGGGCC
CCCCAAATCCCTTCGGAAGGGTTACATTTTGCCCCCAAAGAATAAAAAAA
AAATTTCCCACTCCCGGGGTTTTAAAAAAAAAAACACCCCCTCACCGACA
AACACATCCAAAATTTAAAAAATATCCCTCCCCCCTCCTT
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