DY258597

Overview
NameDY258597
Unique NameDY258597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: PDXB_PSEA6 (Erythronate-4-phosphate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=pdxB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.851e-14
Identity = 58/194 (29.90%), Postives = 91/194 (46.91%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            V AE +K  +N++ + TA  G++H+D       GL +    G N V+VAE  L  + ++              +W           L  KTVG VG G +G  L ++L      + YH     DP L      +   D+DT++ +CDI+ ++ PL E     T  MFD  RI +++K  L+ N  RG ++D +A
Sbjct:   49 VNAELLKANQNIKYVGTATAGTNHLDKEYLRSRGLDIHSAAGCNAVAVAEYVLSALFVMAEKL----------DW----------QLTTKTVGIVGAGHVGTRLTEKLTAL--GIRYH---LCDPPLADAGDTRDFVDMDTIM-QCDIISLHVPLIEGGQYNTGHMFDAKRIGQLRKDQLLINACRGEVIDNKA 216          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: GHRB_ERWCT (Glyoxylate/hydroxypyruvate reductase B OS=Erwinia carotovora subsp. atroseptica GN=ghrB PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.851e-14
Identity = 61/208 (29.33%), Postives = 100/208 (48.08%), Query Frame = 1
Query:  322 HPAYVTAERI------------KKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            HPA  TAE I            + A  L+   T  VG D  +++     G+ +         +VA+  L  +L   R  +    +V +GEW    G  +   D+  KT+G +G GRIG  + QR    F+  +LY+ R +   + E+   A+   DLDT+L + D + +  PLT +T  +  ++++AKMK   ++ N  RGA++D  A
Sbjct:   36 HPALATAEGIIGSGGKVDKDFLQHAPRLRAASTISVGYDTFNVDALNEKGVILMHTPTVLTETVADTVLALMLASARRVVEVVERVKAGEWKGGVGSDWFGTDVHHKTIGILGMGRIGLAVAQRAHFGFSMPVLYNAR-RHHAEAEERFNAR-HCDLDTLLAESDFLCITLPLTAETHHLIGREQLAKMKPSAILINIGRGAVVDEDA 241          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: GHRB_ECOLU (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.851e-14
Identity = 57/192 (29.69%), Postives = 94/192 (48.96%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            V A  + K   L+   T  VG D+ D++      + +         +VA+  +  +L   R  +    +V +GEW  + G  +   D+  KT+G VG GRIG  L QR    FN  +LY+ R +   + E+   A++  DLD++L + D V +  PLT++T  +F  ++  KMK   +  N  RG ++D  A
Sbjct:   56 VDAALLGKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNAR-RHHKEAEERFNARYC-DLDSLLQESDFVCLILPLTDETYHLFGAEQFGKMKSSAIFINAGRGPVVDENA 245          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: Y2577_STAA8 (Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02577 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.418e-14
Identity = 50/191 (26.18%), Postives = 93/191 (48.69%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH-QVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            V  + I   K+L+++   G G ++ID+       + V     ++  + A+  +  +L + R  + G      +G    A + +R  ++ GKT+G +G G IG  + +R   F+ ++LY    + + + E+E GAK+  DLDT+L   D + +N     K   + D ++   MK    + N +RG I+  QA
Sbjct:   56 VDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKE-EKEREIGAKY-VDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQA 244          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: Y2296_STAAC (Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=Staphylococcus aureus (strain COL) GN=SACOL2296 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.418e-14
Identity = 50/191 (26.18%), Postives = 93/191 (48.69%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH-QVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            V  + I   K+L+++   G G ++ID+       + V     ++  + A+  +  +L + R  + G      +G    A + +R  ++ GKT+G +G G IG  + +R   F+ ++LY    + + + E+E GAK+  DLDT+L   D + +N     K   + D ++   MK    + N +RG I+  QA
Sbjct:   56 VDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKE-EKEREIGAKY-VDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQA 244          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: Y2254_STAA3 (Putative 2-hydroxyacid dehydrogenase SAUSA300_2254 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2254 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.418e-14
Identity = 50/191 (26.18%), Postives = 93/191 (48.69%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH-QVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            V  + I   K+L+++   G G ++ID+       + V     ++  + A+  +  +L + R  + G      +G    A + +R  ++ GKT+G +G G IG  + +R   F+ ++LY    + + + E+E GAK+  DLDT+L   D + +N     K   + D ++   MK    + N +RG I+  QA
Sbjct:   56 VDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKE-EKEREIGAKY-VDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQA 244          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: Y2224_STAAW (Putative 2-hydroxyacid dehydrogenase MW2224 OS=Staphylococcus aureus (strain MW2) GN=MW2224 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.418e-14
Identity = 50/191 (26.18%), Postives = 93/191 (48.69%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH-QVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            V  + I   K+L+++   G G ++ID+       + V     ++  + A+  +  +L + R  + G      +G    A + +R  ++ GKT+G +G G IG  + +R   F+ ++LY    + + + E+E GAK+  DLDT+L   D + +N     K   + D ++   MK    + N +RG I+  QA
Sbjct:   56 VDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKE-EKEREIGAKY-VDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQA 244          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: Y2196_STAAS (Putative 2-hydroxyacid dehydrogenase SAS2196 OS=Staphylococcus aureus (strain MSSA476) GN=SAS2196 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.418e-14
Identity = 50/191 (26.18%), Postives = 93/191 (48.69%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH-QVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            V  + I   K+L+++   G G ++ID+       + V     ++  + A+  +  +L + R  + G      +G    A + +R  ++ GKT+G +G G IG  + +R   F+ ++LY    + + + E+E GAK+  DLDT+L   D + +N     K   + D ++   MK    + N +RG I+  QA
Sbjct:   56 VDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKE-EKEREIGAKY-VDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQA 244          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: DDH2_SCHPO (2-hydroxyacid dehydrogenase homolog 2 OS=Schizosaccharomyces pombe GN=SPAC186.02c PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.158e-14
Identity = 54/171 (31.58%), Postives = 93/171 (54.39%), Query Frame = 1
Query:  394 GSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXP-FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            G ++++L       +TV  V   +  +V+E  +  +L L R     + +V   ++N+ G+     D+ GKTVG +G G+IG  + +     F C++L +D +  D +LE   G +F E  + +L K D + ++ PLT  T  + + D +A MKKGV I N +RG ++DT+A
Sbjct:   78 GYNNVNLKAASEYKITVVHVPSYSPFAVSEFTVGLLLSLNRKIHRAYVRVREDDFNIVGLL--GCDIHGKTVGVIGTGKIGSNVAKCFKMGFGCDVLAYD-INPDKKLENY-GVQFVEQ-NEVLKKADFLCLHCPLTPSTTHIVNSDSLALMKKGVTIVNTSRGGLIDTKA 243          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: PDXB_VIBF1 (Erythronate-4-phosphate dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=pdxB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.124e-14
Identity = 55/194 (28.35%), Postives = 89/194 (45.88%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            V AE I+KA  L+ + TA  G DH+D       G+      G N V VAE  L  +++L +                         +  KT G VG G++G  L Q L   N + L +D +K     E+E  ++    LD +L K D++ ++TP+T      T  +  +  ++K++   ++ N ARG ++D QA
Sbjct:   49 VNAELIEKANKLKFVGTATAGMDHVDQALLKEKGIFFTAAPGCNKVGVAEYVLSCLMVLAQQ--------------------HGFSIFDKTFGIVGAGQVGSYLAQCLDALNISYLLNDPIK-----EQEGDSRSFVALDELLEKSDVITLHTPITRDGEYPTHHLIGQKTLSKLRNDQILINAARGPVVDNQA 217          
The following BLAST results are available for this feature:
BLAST of DY258597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PDXB_PSEA61.851e-1429.90Erythronate-4-phosphate dehydrogenase OS=Pseudoalt... [more]
GHRB_ERWCT1.851e-1429.33Glyoxylate/hydroxypyruvate reductase B OS=Erwinia ... [more]
GHRB_ECOLU1.851e-1429.69Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
Y2577_STAA82.418e-1426.18Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577... [more]
Y2296_STAAC2.418e-1426.18Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=... [more]
Y2254_STAA32.418e-1426.18Putative 2-hydroxyacid dehydrogenase SAUSA300_2254... [more]
Y2224_STAAW2.418e-1426.18Putative 2-hydroxyacid dehydrogenase MW2224 OS=Sta... [more]
Y2196_STAAS2.418e-1426.18Putative 2-hydroxyacid dehydrogenase SAS2196 OS=St... [more]
DDH2_SCHPO3.158e-1431.582-hydroxyacid dehydrogenase homolog 2 OS=Schizosac... [more]
PDXB_VIBF14.124e-1428.35Erythronate-4-phosphate dehydrogenase OS=Vibrio fi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CB10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258597 ID=DY258597; Name=DY258597; organism=Citrus clementina; type=EST; length=1290bp
AATTGGGAGATGGCCATGAAGAGAGTAGCTAGCTCTGCAATTAACGCTTT
TGCTTCGTCGGGATATCTTCGTTCATCGTCGAGGTTTTCTCGACACTATG
CTTCTTCTGGAAGTAAGAAGATTGTTGGGGTGTTCTACAAGGGCAATGAA
TACGCTTCAATGAATCCCAACTTTCTTGGTTGTGTGGAGGGAGGCTGTGG
TCTGCGTGAATGGCTGGAATCGAAAGGTCACCAATATATTGTCACTGATG
ACAAAGAGGGACCAGACTGTGAACTAGAGAAACATATTCCTGATCTCCAC
GTCCTCATATCTACCCCCTTCCACCCTGCCTATGTTACGGCGGAAAGGAT
TAAGAAGGCCAAAAATTTGCAACTGCTTCTCACTGCTGGAGTTGGCTCTG
ATCATATTGATCTAAATGCTGCTGCTGCTGCTGGTTTAACTGTTGCTGAA
GTTACTGGAAGCAATGTGGTTTCAGTTGCTGAGGACGAGCTTATGAGAAT
CCTTATTCTTGTCCGTAATTTCTTACCTGGACACCATCAAGTTATCAGTG
GGGAATGGAATGTTGCCGGTGTTGCTTATAGAGCTCATGATCTTGAAGGA
AAGACAGTGGGAACTGTTGGTTGTGGACGCATTGGCAAGCTGTTGCTCCA
ACGACTTANACCTTTCAATTGTAACCTCCTTTATCATGACCGGGTGAAGA
TGGATCCTCAATTGGAGAAAGAGACTGGAGCAAAATTTGAGGAGGATCTA
GATACTATGCTTCCCAAATGTGACATAGTTGTTGTCAACACCCCTCTAAC
AGAAAAGACGAGAGGGATGTTTGACAAAGATAGGATTGCAAAGATGAAGA
AGGGCGTCTTGATTGCCAACAATGCTCGAGGAGCAATCATGGACACCCAA
GCTGGTTGTTGACCCTTGCTCCTAGGGAAACCATTGGAGGGTTATAGGGG
GGGAGGTTTGGGAATCCCCAAACCCGCCTCCAAAGGACCCTCCCCTGGGG
GTTAACATGGCCAAATTCAGGAAAAGAACCCCCTCTGGTTTTTCGGGGAA
CCCTTTTTGGAGGCCCAACCTACCCTTATGCTGGCGGGGAGATCAAGGGA
ATTTGCTTTGAAAAAAAATTCTTTCCAGGGGGAAAAAAAAATTTTTTCCT
GTTTTTAAAAATTTTACAATAATGGGGGAGGGGGGGGGGGGGGAAGCCCG
GGGGCCCCCCCCCTTCAAATATTCTAAAAATAATATTTTTTTCCCCGGGT
GTTGGTGAAGAGAAAAGAACGAAGGGAAGTGTATCTGTCG
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