DY258597

Overview
NameDY258597
Unique NameDY258597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: DHD2_LACPA (D-2-hydroxyisocaproate dehydrogenase OS=Lactobacillus paracasei PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.956e-12
Identity = 68/280 (24.29%), Postives = 125/280 (44.64%), Query Frame = 1
Query:  205 REWLESKGHQYIV-TDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFE-EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQAGC*PLLLGKPLEGYRGGGLXXXXXXXXXXXXXXXHGQIQEKNPLW 1038
            ++W +  G+     T+  +    E  K    ++ L +TP+  A    E++  A  ++ L    VG+D+ID+      G+ ++ V   +  ++AE  L   L L+RN      Q+ +G++  AG  +   +L  +TVG +G G IG++ ++    F   ++ +     DP   K     F+   L+ +  + D++ ++ P  E+   + ++     MK G ++ N AR  ++DTQA    L  GK      G G+               HG    K+PLW
Sbjct:   17 KQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPY--AAGVFEKMH-AYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAG-TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAY-----DPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGK----LAGVGIDTYEYETEDLLNLAKHGSF--KDPLW 281          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: PDXB_SHELP (Erythronate-4-phosphate dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=pdxB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.041e-12
Identity = 51/183 (27.87%), Postives = 81/183 (44.26%), Query Frame = 1
Query:  367 LQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT----EKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            L  + +A +G DH+DL+     G+      G N V+V E     +L L R F                     + L+GKTVG VG G  G  L + L  +    L +     DP LE+    +    LD ++ +CD++ ++ PLT      T  +FDK R+  + +   + N  RG ++D +A
Sbjct:   60 LSFVGSATIGMDHLDLDYLKQRGIFCTNAPGCNAVAVGEYAFNAMLELARRF--------------------HNPLKGKTVGIVGAGNTGTALQKCLEAYGVKTLLN-----DPLLEQSGDEREFVSLDELIERCDVISLHVPLTRDGEHPTHYLFDKRRLNALAEDTWLLNCCRGEVIDNRA 217          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: PDXB_SHEFN (Erythronate-4-phosphate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=pdxB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.584e-12
Identity = 56/212 (26.42%), Postives = 95/212 (44.81%), Query Frame = 1
Query:  280 KHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            K + D  VL+        V AE IK A  L+ + +A +G+DH+D++      +      G N  +V E   + +L L + F                       L GK VG VG G  G    + +  +   +L  D +K    L+ +T  +    LDT++ + DI+ ++ P+T+    KT  +FD+ R+ K+K    + N  RG ++D +A
Sbjct:   33 KQVEDADVLLVRSV--TKVNAELIKDAHKLKFVGSATIGTDHVDVDYLSLRNIYFTNAPGCNATAVGEYAFIAMLELAQRF--------------------GESLAGKVVGIVGAGNTGTAAAKCMQAYGLKVLLCDPIK---ALQGDT--REFVSLDTIIEQADIISLHVPITKDGEHKTWYLFDEARLNKLKPNTWLLNCCRGEVIDNRA 217          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: SERA_SCHPO (Putative D-3-phosphoglycerate dehydrogenase OS=Schizosaccharomyces pombe GN=SPCC364.07 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.599e-12
Identity = 51/190 (26.84%), Postives = 91/190 (47.89%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            +T   ++ A +L ++    +G++ +DL+     G+ V     +N  SVAE  +  I+ L R       ++  GEWN   V+    ++ GKT+G +G G IG  L         +++Y+D + + P       AK    L  +L + D V ++ P + +T+ M      A MK+G  + N +RG ++D  A
Sbjct:  109 LTRRVLEAADSLIVIGCFCIGTNQVDLDFAAERGIAVFNSPYANSRSVAELVIGYIISLARQVGDRSLELHRGEWNK--VSSGCWEIRGKTLGIIGYGHIGSQLSVLAEAMGLHVVYYDILPIMPL----GSAKQLSSLPELLHRADFVSLHVPASPETKNMISSKEFAAMKEGSYLINASRGTVVDIPA 292          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: PDXB_SHEPC (Erythronate-4-phosphate dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=pdxB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.599e-12
Identity = 49/194 (25.26%), Postives = 87/194 (44.85%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT----EKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            V AE +     L+ + +A +G+DH+DL       +  +   G N  +V E   + +L L + F                       L+GK VG VG G  G    + L  +   +L +D +K     EK+   +    L+T++ + DI+ ++ P+T     KT+ +FD+ R+  +K    + N  RG ++D +A
Sbjct:   49 VNAELLSDNHQLKFVGSATIGTDHVDLAYLGERNIPFSNAPGCNATAVGEFAFIAMLELAQRF--------------------DSPLKGKVVGIVGAGNTGTATAKCLQAYGIKVLLNDPIK-----EKQGDPRSFVSLETIMAQADIISLHVPITRTGEHKTKHLFDEARLTALKPNTWLVNCCRGDVIDNKA 217          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: PDXB_SHEB2 (Erythronate-4-phosphate dehydrogenase OS=Shewanella baltica (strain OS223) GN=pdxB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.467e-11
Identity = 50/194 (25.77%), Postives = 85/194 (43.81%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT----EKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            V AE +     L+ + +A +G+DH+DL       +  +   G N  +V E   + +L L + F                       L+GK VG VG G  G    + L  +   +L +D +K       E   +    LDT++ + DI+ ++ P+T     KT+ +FD+ R+  +K    + N  RG ++D QA
Sbjct:   49 VNAELLSGNNKLKFVGSATIGTDHVDLAYLAERNIPFSNAPGCNATAVGEFAFIAMLELAQRF--------------------NSPLKGKVVGIVGAGNTGTATAKCLQAYGIKVLLNDPIK-----AAEGDPRSFVSLDTIMAQADIISLHVPITHTGEHKTKHLFDEARLKALKPNTWLVNCCRGDVIDNQA 217          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: PDXB_SALRD (Erythronate-4-phosphate dehydrogenase OS=Salinibacter ruber (strain DSM 13855) GN=pdxB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.916e-11
Identity = 54/183 (29.51%), Postives = 83/183 (45.36%), Query Frame = 1
Query:  367 LQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL----TEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            L+ + +A +G+DH+D +     G+  A   GSN  SVA+  +  +L L R                     R   LE +TVG VGCG IG  L +RL      +L +D  +        TG  F   LDT+L   D+V ++ PL     + T  + D   + ++  G  + N +RGA++D  A
Sbjct:   62 LRFVGSATIGTDHVDRDYLRAQGIPFAHAPGSNADSVADYVVAALLGLARR--------------------RGGALEERTVGIVGCGNIGGRLARRLSALGMEVLRNDPPRARAADADGTGHGF-VPLDTVLGAADVVTLHVPLKASGPDPTHHLVDAAFLDRLGDGAWLLNTSRGAVVDGDA 223          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: PDXB_PSEF5 (Erythronate-4-phosphate dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=pdxB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.502e-11
Identity = 49/178 (27.53%), Postives = 82/178 (46.07%), Query Frame = 1
Query:  382 TAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT----EKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            T  +G+DH+DL      G+T +   G N   V +  L  +L L                 + GV     DL  +  G VG G +G  L++ L     N+L       DPQ +   G  +   L+ +L +CD++ ++TPLT    + T  + D+ R+ +++ G  + N ARG ++D +A
Sbjct:   64 TCTIGTDHLDLEHFQQAGITWSSAPGCNARGVVDYVLGSLLTLA---------------EIEGV-----DLAQRCYGVVGAGEVGGRLIEVLRGLGWNVLV-----CDPQRQAAEGGDY-VSLEQLLERCDVISLHTPLTKSGQDSTWHLLDRQRLNRLRHGTWLINAARGPVVDNRA 215          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: PDXB_AZOVD (Erythronate-4-phosphate dehydrogenase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=pdxB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.502e-11
Identity = 50/178 (28.09%), Postives = 84/178 (47.19%), Query Frame = 1
Query:  382 TAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK----TRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            T  +G+DH+DL+     G+  A   G N   V +  L  +L L                       +  DL  +  G VG G++G  L++ L      +L  D     P+   E G     DL T+L +CD++ V+TPLT +    TR +F ++++A+++ G  + N +RGA++D +A
Sbjct:   64 TCTIGTDHLDLDYLRRRGIAWASAPGCNARGVVDYVLGSLLSLAER--------------------QGVDLASRCYGVVGAGQVGGRLVEVLRGLGWRVLVCD----PPRQALERGDFV--DLPTLLRECDVLSVHTPLTHEGAHPTRHLFGREQLARLRPGTWLINASRGAVVDNRA 215          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: PDXB_SHEB8 (Erythronate-4-phosphate dehydrogenase OS=Shewanella baltica (strain OS185) GN=pdxB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.268e-11
Identity = 50/194 (25.77%), Postives = 84/194 (43.30%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT----EKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            V AE +     L+ + +A +G+DH+DL       +  +   G N  +V E   + +L L + F                       L+GK VG VG G  G    + L  +   +L +D +K       E   +    LDT+  + DI+ ++ P+T     KT+ +FD+ R+  +K    + N  RG ++D QA
Sbjct:   49 VNAELLSGNNKLKFVGSATIGTDHVDLAYLAERNIPFSNAPGCNATAVGEFAFIAMLELAQRF--------------------NSPLKGKVVGIVGAGNTGTATAKCLQAYGIKVLLNDPIK-----AAEGDPRSFVSLDTITAQADIISLHVPITRTGEHKTKHLFDEARLKALKPNTWLVNCCRGDVIDNQA 217          
The following BLAST results are available for this feature:
BLAST of DY258597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
DHD2_LACPA2.956e-1224.29D-2-hydroxyisocaproate dehydrogenase OS=Lactobacil... [more]
PDXB_SHELP5.041e-1227.87Erythronate-4-phosphate dehydrogenase OS=Shewanell... [more]
PDXB_SHEFN6.584e-1226.42Erythronate-4-phosphate dehydrogenase OS=Shewanell... [more]
SERA_SCHPO8.599e-1226.84Putative D-3-phosphoglycerate dehydrogenase OS=Sch... [more]
PDXB_SHEPC8.599e-1225.26Erythronate-4-phosphate dehydrogenase OS=Shewanell... [more]
PDXB_SHEB21.467e-1125.77Erythronate-4-phosphate dehydrogenase OS=Shewanell... [more]
PDXB_SALRD1.916e-1129.51Erythronate-4-phosphate dehydrogenase OS=Salinibac... [more]
PDXB_PSEF52.502e-1127.53Erythronate-4-phosphate dehydrogenase OS=Pseudomon... [more]
PDXB_AZOVD2.502e-1128.09Erythronate-4-phosphate dehydrogenase OS=Azotobact... [more]
PDXB_SHEB83.268e-1125.77Erythronate-4-phosphate dehydrogenase OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CB10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258597 ID=DY258597; Name=DY258597; organism=Citrus clementina; type=EST; length=1290bp
AATTGGGAGATGGCCATGAAGAGAGTAGCTAGCTCTGCAATTAACGCTTT
TGCTTCGTCGGGATATCTTCGTTCATCGTCGAGGTTTTCTCGACACTATG
CTTCTTCTGGAAGTAAGAAGATTGTTGGGGTGTTCTACAAGGGCAATGAA
TACGCTTCAATGAATCCCAACTTTCTTGGTTGTGTGGAGGGAGGCTGTGG
TCTGCGTGAATGGCTGGAATCGAAAGGTCACCAATATATTGTCACTGATG
ACAAAGAGGGACCAGACTGTGAACTAGAGAAACATATTCCTGATCTCCAC
GTCCTCATATCTACCCCCTTCCACCCTGCCTATGTTACGGCGGAAAGGAT
TAAGAAGGCCAAAAATTTGCAACTGCTTCTCACTGCTGGAGTTGGCTCTG
ATCATATTGATCTAAATGCTGCTGCTGCTGCTGGTTTAACTGTTGCTGAA
GTTACTGGAAGCAATGTGGTTTCAGTTGCTGAGGACGAGCTTATGAGAAT
CCTTATTCTTGTCCGTAATTTCTTACCTGGACACCATCAAGTTATCAGTG
GGGAATGGAATGTTGCCGGTGTTGCTTATAGAGCTCATGATCTTGAAGGA
AAGACAGTGGGAACTGTTGGTTGTGGACGCATTGGCAAGCTGTTGCTCCA
ACGACTTANACCTTTCAATTGTAACCTCCTTTATCATGACCGGGTGAAGA
TGGATCCTCAATTGGAGAAAGAGACTGGAGCAAAATTTGAGGAGGATCTA
GATACTATGCTTCCCAAATGTGACATAGTTGTTGTCAACACCCCTCTAAC
AGAAAAGACGAGAGGGATGTTTGACAAAGATAGGATTGCAAAGATGAAGA
AGGGCGTCTTGATTGCCAACAATGCTCGAGGAGCAATCATGGACACCCAA
GCTGGTTGTTGACCCTTGCTCCTAGGGAAACCATTGGAGGGTTATAGGGG
GGGAGGTTTGGGAATCCCCAAACCCGCCTCCAAAGGACCCTCCCCTGGGG
GTTAACATGGCCAAATTCAGGAAAAGAACCCCCTCTGGTTTTTCGGGGAA
CCCTTTTTGGAGGCCCAACCTACCCTTATGCTGGCGGGGAGATCAAGGGA
ATTTGCTTTGAAAAAAAATTCTTTCCAGGGGGAAAAAAAAATTTTTTCCT
GTTTTTAAAAATTTTACAATAATGGGGGAGGGGGGGGGGGGGGAAGCCCG
GGGGCCCCCCCCCTTCAAATATTCTAAAAATAATATTTTTTTCCCCGGGT
GTTGGTGAAGAGAAAAGAACGAAGGGAAGTGTATCTGTCG
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