DY258597

Overview
NameDY258597
Unique NameDY258597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: PDXB_PSE14 (Erythronate-4-phosphate dehydrogenase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=pdxB PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 5.574e-11
Identity = 50/178 (28.09%), Postives = 83/178 (46.63%), Query Frame = 1
Query:  382 TAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            T  +G+DH+DL+     G+  A   G N   V +  L  +L L                 + GV     DL  +T G VG G++G  L+  L     N+L       DP  +   G  F   LD +L +CD++ ++TPL++     T  + D+ R+ ++++G  + N +RGA++D  A
Sbjct:   64 TCTIGTDHLDLDGFQQAGIQWASAPGCNARGVVDYVLGSLLTLA---------------EIEGV-----DLAQRTYGVVGAGQVGGRLVDVLKALGWNVLV-----CDPPRKSAEGGDF-VSLDEILQRCDVISLHTPLSKAGASATWHLLDETRLRQLRQGAWLINASRGAVVDNTA 215          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: PDXB_ALISL (Erythronate-4-phosphate dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=pdxB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.574e-11
Identity = 49/194 (25.26%), Postives = 84/194 (43.30%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            V +E + KA  L  + TA  G DH++       G+      G N V VAE  L  +++L +                         +  KT G +G G++G  L Q L   +   L +D +K     E+E   +    LD +L K D++ ++TP+T      T  +  ++R+  ++   ++ N ARG ++D  A
Sbjct:   49 VNSELLSKANKLSFVGTATAGMDHVNQALLKNKGVFFTAAPGCNKVGVAEYVLSCVMVLAQQ--------------------HGFSIFDKTFGIIGAGQVGSYLAQCLDALSIPYLLNDPIK-----EQEGDTRSFVSLDELLEKSDVISLHTPITRDGNFPTHHLIGQERLLTLRHDQILINAARGPVVDNDA 217          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: GRHPR_HUMAN (Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.574e-11
Identity = 57/222 (25.68%), Postives = 98/222 (44.14%), Query Frame = 1
Query:  250 DKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKK------AKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRA-HDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMD 894
            D+  P  ELE+ +   H L+        + ++ + K        NL+++ T  VG DH+ L+     G+ V         + AE  +  +L   R       +V +G W      +   + L   TVG +G GRIG+ + +RL PF      +   +  P+   E  A+F    + +  + D +VV   LT  T G+ +KD   KMK+  +  N +RG +++
Sbjct:   37 DEPIPAKELERGVAGAHGLLC-------LLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPE-LAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVN 250          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: PDXB_SHESM (Erythronate-4-phosphate dehydrogenase OS=Shewanella sp. (strain MR-4) GN=pdxB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.280e-11
Identity = 50/194 (25.77%), Postives = 83/194 (42.78%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT----EKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            V A  +     L+ + +A +G+DH+DL      G+  +   G N  +V E   + +L L   F                       L+GK VG VG G  G    + L  +   +L +D +K       E   +    L+T+L + DI+ ++ P+T     KT  +FD+ R+  +K    + N  RG ++D QA
Sbjct:   49 VNAALLDANPKLKFVGSATIGTDHVDLAYLARRGIPFSNAPGCNATAVGEFAFIAMLELAARF--------------------NSPLKGKVVGIVGAGNTGSATAKCLEAYGIKVLLNDPIK-----AAEGDPRHFVSLETLLHQADIISLHVPITRSGEHKTLHLFDEARLMSLKPNTWLVNCCRGDVIDNQA 217          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: PDXB_PSEU2 (Erythronate-4-phosphate dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=pdxB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.280e-11
Identity = 50/178 (28.09%), Postives = 82/178 (46.07%), Query Frame = 1
Query:  382 TAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            T  +G+DH+DL+     G+  A   G N   V +  L  +L L                 + GV     DL  +T G VG G++G  L+  L     N+L       DP  +   G  F   LD +L +CD++ ++TPL++     T  + D  R+ ++++G  + N +RGA++D  A
Sbjct:   64 TCTIGTDHLDLDWFQQAGIQWASAPGCNARGVVDYVLGSLLTLA---------------EIEGV-----DLAQRTYGVVGAGQVGARLISVLKALGWNVLV-----CDPPRQAAEGGDF-VSLDEILQRCDVISLHTPLSKTGASPTWHLLDDARLRQLRQGAWLINASRGAVVDNAA 215          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: PDXB_SHESA (Erythronate-4-phosphate dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=pdxB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.508e-11
Identity = 50/194 (25.77%), Postives = 83/194 (42.78%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT----EKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            V A  +     L+ + +A +G+DH+DL      G+  +   G N  +V E   + +L L   F                       L+GK VG VG G  G    + L  +   +L +D +K       E   +    L+T+L + DI+ ++ P+T     KT  +FD+ R+  +K    + N  RG ++D QA
Sbjct:   49 VNAALLDANSKLKFVGSATIGTDHVDLAYLAGRGIPFSNAPGCNATAVGEFAFIAMLELAARF--------------------NSPLKGKVVGIVGAGNTGSATAKCLEAYGIKVLLNDPIK-----AAEGDPRHFVSLETLLHEADIISLHVPITRTGEHKTLHLFDEARMMSLKPNTWLLNCCRGDVIDNQA 217          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: PDXB_SHEB9 (Erythronate-4-phosphate dehydrogenase OS=Shewanella baltica (strain OS195) GN=pdxB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.508e-11
Identity = 49/194 (25.26%), Postives = 84/194 (43.30%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT----EKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            V AE +     L+ + +A +G+DH+DL       +  +   G N  +V E   + +L L + F                       L+GK VG VG G  G    + L  +   +L +D +K       E   +    L+T++ + DI+ ++ P+T     KT+ +FD+ R+  +K      N  RG ++D QA
Sbjct:   49 VNAELLSGNNKLKFVGSATIGTDHVDLAYLAERNIPFSNAPGCNATAVGEFAFIAMLELAQRF--------------------NSPLKGKVVGIVGAGNTGTATAKCLQAYGIKVLLNDPIK-----AAEGDPRSFVSLETIMAQADIISLHVPITRTGEHKTKYLFDEARLKALKPNTWFVNCCRGDVIDNQA 217          
The following BLAST results are available for this feature:
BLAST of DY258597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PDXB_PSE145.574e-1128.09Erythronate-4-phosphate dehydrogenase OS=Pseudomon... [more]
PDXB_ALISL5.574e-1125.26Erythronate-4-phosphate dehydrogenase OS=Aliivibri... [more]
GRHPR_HUMAN5.574e-1125.68Glyoxylate reductase/hydroxypyruvate reductase OS=... [more]
PDXB_SHESM7.280e-1125.77Erythronate-4-phosphate dehydrogenase OS=Shewanell... [more]
PDXB_PSEU27.280e-1128.09Erythronate-4-phosphate dehydrogenase OS=Pseudomon... [more]
PDXB_SHESA9.508e-1125.77Erythronate-4-phosphate dehydrogenase OS=Shewanell... [more]
PDXB_SHEB99.508e-1125.26Erythronate-4-phosphate dehydrogenase OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CB10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258597 ID=DY258597; Name=DY258597; organism=Citrus clementina; type=EST; length=1290bp
AATTGGGAGATGGCCATGAAGAGAGTAGCTAGCTCTGCAATTAACGCTTT
TGCTTCGTCGGGATATCTTCGTTCATCGTCGAGGTTTTCTCGACACTATG
CTTCTTCTGGAAGTAAGAAGATTGTTGGGGTGTTCTACAAGGGCAATGAA
TACGCTTCAATGAATCCCAACTTTCTTGGTTGTGTGGAGGGAGGCTGTGG
TCTGCGTGAATGGCTGGAATCGAAAGGTCACCAATATATTGTCACTGATG
ACAAAGAGGGACCAGACTGTGAACTAGAGAAACATATTCCTGATCTCCAC
GTCCTCATATCTACCCCCTTCCACCCTGCCTATGTTACGGCGGAAAGGAT
TAAGAAGGCCAAAAATTTGCAACTGCTTCTCACTGCTGGAGTTGGCTCTG
ATCATATTGATCTAAATGCTGCTGCTGCTGCTGGTTTAACTGTTGCTGAA
GTTACTGGAAGCAATGTGGTTTCAGTTGCTGAGGACGAGCTTATGAGAAT
CCTTATTCTTGTCCGTAATTTCTTACCTGGACACCATCAAGTTATCAGTG
GGGAATGGAATGTTGCCGGTGTTGCTTATAGAGCTCATGATCTTGAAGGA
AAGACAGTGGGAACTGTTGGTTGTGGACGCATTGGCAAGCTGTTGCTCCA
ACGACTTANACCTTTCAATTGTAACCTCCTTTATCATGACCGGGTGAAGA
TGGATCCTCAATTGGAGAAAGAGACTGGAGCAAAATTTGAGGAGGATCTA
GATACTATGCTTCCCAAATGTGACATAGTTGTTGTCAACACCCCTCTAAC
AGAAAAGACGAGAGGGATGTTTGACAAAGATAGGATTGCAAAGATGAAGA
AGGGCGTCTTGATTGCCAACAATGCTCGAGGAGCAATCATGGACACCCAA
GCTGGTTGTTGACCCTTGCTCCTAGGGAAACCATTGGAGGGTTATAGGGG
GGGAGGTTTGGGAATCCCCAAACCCGCCTCCAAAGGACCCTCCCCTGGGG
GTTAACATGGCCAAATTCAGGAAAAGAACCCCCTCTGGTTTTTCGGGGAA
CCCTTTTTGGAGGCCCAACCTACCCTTATGCTGGCGGGGAGATCAAGGGA
ATTTGCTTTGAAAAAAAATTCTTTCCAGGGGGAAAAAAAAATTTTTTCCT
GTTTTTAAAAATTTTACAATAATGGGGGAGGGGGGGGGGGGGGAAGCCCG
GGGGCCCCCCCCCTTCAAATATTCTAAAAATAATATTTTTTTCCCCGGGT
GTTGGTGAAGAGAAAAGAACGAAGGGAAGTGTATCTGTCG
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