DY258597

Overview
NameDY258597
Unique NameDY258597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: GYAR_THEON (Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.083e-22
Identity = 64/195 (32.82%), Postives = 105/195 (53.85%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYR-----AHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            + AE    A  L+++    VG D+ID+      G+ +         + A+   + +L   R  +     V SGEW   GVA+       +D+ G+T+G VG GRIG+ + +R   F   +LY+ R +  P++EKE GA+F   LD +L + D VV+  PLT++T  M +++R+  MK   ++ N ARG ++DT+A
Sbjct:   57 IDAEVFDAAPRLKIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARRAKGFGMRILYNSRTRK-PEVEKELGAEFMP-LDELLKESDFVVLVVPLTKETYHMINEERLKLMKPTAILVNIARGKVVDTEA 249          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.667e-21
Identity = 69/217 (31.80%), Postives = 111/217 (51.15%), Query Frame = 1
Query:  256 EGPDCE-LEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            +GPD + L   +P+   L+        V AE +  A  L+++  AGVG D++D++     G+ V     SN+ S AE  L  +L   R        +    W  +  ++   ++ GKTVG VG GRIG+L+ QR+  F   ++ +D   + P    + G +    LD +L + D + V+ P T +T G+ DK+ +AK K GV+I N ARG ++D  A
Sbjct:   30 DGPDRDKLLAAVPEADALLVRS--ATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRS--SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPY-VSPARAAQLGIELLS-LDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAA 240          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.667e-21
Identity = 69/217 (31.80%), Postives = 111/217 (51.15%), Query Frame = 1
Query:  256 EGPDCE-LEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            +GPD + L   +P+   L+        V AE +  A  L+++  AGVG D++D++     G+ V     SN+ S AE  L  +L   R        +    W  +  ++   ++ GKTVG VG GRIG+L+ QR+  F   ++ +D   + P    + G +    LD +L + D + V+ P T +T G+ DK+ +AK K GV+I N ARG ++D  A
Sbjct:   30 DGPDRDKLLAAVPEADALLVRS--ATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRS--SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPY-VSPARAAQLGIELLS-LDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAA 240          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: GYAR_THELI (Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.667e-21
Identity = 60/195 (30.77%), Postives = 103/195 (52.82%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYR-----AHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            V  E ++ A  L+++    VG D+ID+      G+ V    G    + A+     +L + R  +     V SGEW  + V +       + L+GKT+G VG GRIG+ L +R   F   ++Y+ R +  P+ E+E GA++  D +T+L + D + ++ PLT++T  M  +  +  MK   ++ N +RGA++DT A
Sbjct:   57 VDKELLENAPKLKIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKRAKGFGMKIIYYSRTRK-PEAEEEIGAEYV-DFETLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAILINTSRGAVVDTNA 249          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.549e-21
Identity = 63/193 (32.64%), Postives = 97/193 (50.26%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFE---EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            VT E I+ A  L+++  AGVG D++D+      G+ V     S  ++VAE  +  +L L R        V  G+W      +   +L GKT+G +G GRIG  ++ R   F  +++ +D     P + KE   +      DL+T+L + DIV ++ PLT +TR +  +D    MK    I N ARG I+D  A
Sbjct:   55 VTREVIEAAPRLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSVKEGKWEKN--RFMGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDIMVYD-----PYISKEAAEEMGVTVTDLETLLRESDIVTIHVPLTPETRHLISEDEFKLMKDTAFIVNCARGGIIDEDA 240          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.324e-20
Identity = 67/217 (30.88%), Postives = 111/217 (51.15%), Query Frame = 1
Query:  256 EGPD-CELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            +GPD  +L   +P+   L+        V AE +  A  L+++  AGVG D++D++     G+ V     SN+ S AE  L  +L   R        + +  W  +  ++   ++ GKTVG VG GRIG+L+  R+  F  +++ +D   + P    + G +     D +L + D + V+ P T +T G+ DK+ +AK K GV+I N ARG ++D  A
Sbjct:   30 DGPDRTKLLAAVPEADALLVRS--ATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIAEADASLRAHIWKRS--SFSGTEIFGKTVGVVGLGRIGQLVAARIAAFGAHVIAYDPY-VAPARAAQLGIELMS-FDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEVA 240          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: SERA_PANTR (D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.949e-20
Identity = 61/190 (32.11%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            VTA+ I  A+ LQ++  AG G D++DL      G+ V      N +S AE     I+ L R        +  G+W      +   +L GKT+G +G GRIG+ +  R+  F    + +D + + P++    G + +  L+ + P CD + V+TPL   T G+ + +  A+ KKGV + N ARG I+D  A
Sbjct:   59 VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPI-ISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGA 244          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: SERA_HUMAN (D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4)

HSP 1 Score: 100.138 bits (248), Expect = 2.949e-20
Identity = 61/190 (32.11%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            VTA+ I  A+ LQ++  AG G D++DL      G+ V      N +S AE     I+ L R        +  G+W      +   +L GKT+G +G GRIG+ +  R+  F    + +D + + P++    G + +  L+ + P CD + V+TPL   T G+ + +  A+ KKGV + N ARG I+D  A
Sbjct:   59 VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPI-ISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGA 244          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: SERA_MACFA (D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4)

HSP 1 Score: 99.7525 bits (247), Expect = 3.851e-20
Identity = 61/190 (32.11%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            VTA+ I  A+ LQ++  AG G D++DL      G+ V      N +S AE     I+ L R        +  G+W      +   +L GKT+G +G GRIG+ +  R+  F    + +D + + P++    G + +  L+ + P CD + V+TPL   T G+ + +  A+ KKGV + N ARG I+D  A
Sbjct:   59 VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPI-ISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGA 244          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: SERA_MOUSE (D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 5.030e-20
Identity = 61/190 (32.11%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            VTA+ I  A+ LQ++  AG G D++DL      G+ V      N +S AE     I+ L R        +  G+W+     +   +L GKT+G +G GRIG+ +  R+  F    + +D + + P++    G + +  L+ + P CD + V+TPL   T G+ +    A+ KKGV + N ARG I+D  A
Sbjct:   59 VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWDRK--KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTVGYDPI-ISPEVAASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGA 244          
The following BLAST results are available for this feature:
BLAST of DY258597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
GYAR_THEON1.083e-2232.82Glyoxylate reductase OS=Thermococcus onnurineus (s... [more]
SERA_MYCTU2.667e-2131.80D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO2.667e-2131.80D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
GYAR_THELI2.667e-2130.77Glyoxylate reductase OS=Thermococcus litoralis GN=... [more]
SERA_METTH4.549e-2132.64D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
SERA_MYCLE1.324e-2030.88D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_PANTR2.949e-2032.11D-3-phosphoglycerate dehydrogenase OS=Pan troglody... [more]
SERA_HUMAN2.949e-2032.11D-3-phosphoglycerate dehydrogenase OS=Homo sapiens... [more]
SERA_MACFA3.851e-2032.11D-3-phosphoglycerate dehydrogenase OS=Macaca fasci... [more]
SERA_MOUSE5.030e-2032.11D-3-phosphoglycerate dehydrogenase OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CB10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258597 ID=DY258597; Name=DY258597; organism=Citrus clementina; type=EST; length=1290bp
AATTGGGAGATGGCCATGAAGAGAGTAGCTAGCTCTGCAATTAACGCTTT
TGCTTCGTCGGGATATCTTCGTTCATCGTCGAGGTTTTCTCGACACTATG
CTTCTTCTGGAAGTAAGAAGATTGTTGGGGTGTTCTACAAGGGCAATGAA
TACGCTTCAATGAATCCCAACTTTCTTGGTTGTGTGGAGGGAGGCTGTGG
TCTGCGTGAATGGCTGGAATCGAAAGGTCACCAATATATTGTCACTGATG
ACAAAGAGGGACCAGACTGTGAACTAGAGAAACATATTCCTGATCTCCAC
GTCCTCATATCTACCCCCTTCCACCCTGCCTATGTTACGGCGGAAAGGAT
TAAGAAGGCCAAAAATTTGCAACTGCTTCTCACTGCTGGAGTTGGCTCTG
ATCATATTGATCTAAATGCTGCTGCTGCTGCTGGTTTAACTGTTGCTGAA
GTTACTGGAAGCAATGTGGTTTCAGTTGCTGAGGACGAGCTTATGAGAAT
CCTTATTCTTGTCCGTAATTTCTTACCTGGACACCATCAAGTTATCAGTG
GGGAATGGAATGTTGCCGGTGTTGCTTATAGAGCTCATGATCTTGAAGGA
AAGACAGTGGGAACTGTTGGTTGTGGACGCATTGGCAAGCTGTTGCTCCA
ACGACTTANACCTTTCAATTGTAACCTCCTTTATCATGACCGGGTGAAGA
TGGATCCTCAATTGGAGAAAGAGACTGGAGCAAAATTTGAGGAGGATCTA
GATACTATGCTTCCCAAATGTGACATAGTTGTTGTCAACACCCCTCTAAC
AGAAAAGACGAGAGGGATGTTTGACAAAGATAGGATTGCAAAGATGAAGA
AGGGCGTCTTGATTGCCAACAATGCTCGAGGAGCAATCATGGACACCCAA
GCTGGTTGTTGACCCTTGCTCCTAGGGAAACCATTGGAGGGTTATAGGGG
GGGAGGTTTGGGAATCCCCAAACCCGCCTCCAAAGGACCCTCCCCTGGGG
GTTAACATGGCCAAATTCAGGAAAAGAACCCCCTCTGGTTTTTCGGGGAA
CCCTTTTTGGAGGCCCAACCTACCCTTATGCTGGCGGGGAGATCAAGGGA
ATTTGCTTTGAAAAAAAATTCTTTCCAGGGGGAAAAAAAAATTTTTTCCT
GTTTTTAAAAATTTTACAATAATGGGGGAGGGGGGGGGGGGGGAAGCCCG
GGGGCCCCCCCCCTTCAAATATTCTAAAAATAATATTTTTTTCCCCGGGT
GTTGGTGAAGAGAAAAGAACGAAGGGAAGTGTATCTGTCG
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