DY258597

Overview
NameDY258597
Unique NameDY258597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: GYAR_KORCO (Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.569e-20
Identity = 59/210 (28.10%), Postives = 108/210 (51.43%), Query Frame = 1
Query:  280 KHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAG--VAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            + + D   L+S    P  + AE  + A  L+++    VG D+ID+      G+ V    G    + A+     ++   R  +     V  G+W VA   +    +D+ G+T+G VG GRIG  + +R   F   +LY+D ++ +   EKE G ++   L+ +L + D V ++ PLTE+T  M  ++++ +MK+  ++ N +RG ++D +A
Sbjct:   41 ERVKDCDALVSLLTDP--IDAEVFEAAPKLRIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFALLMAAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAAVARRAKGFGMRILYYDSIRRE-DFEKELGVEYVP-LEKLLEESDFVSLHVPLTEETYHMIGEEQLRRMKRTAILVNTSRGKVVDQKA 246          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: DDH1_SCHPO (2-hydroxyacid dehydrogenase homolog 1 OS=Schizosaccharomyces pombe GN=SPAC186.07c PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.569e-20
Identity = 75/211 (35.55%), Postives = 116/211 (54.98%), Query Frame = 1
Query:  334 VTAERIKK-AKN-LQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQAGC*PLLLGKPLEGYRGGG 957
            V A+ +K  AKN  +L+     G +++DL      G+TV  V   +  +VAE  +  +L L R     + +V   ++N+ G+    HDL GKT+G +G GRIG L+ + L   F C +L HD +K + +LEK  G +F E  + +L K D + ++ PLT  T  + D+  +A MKKGV I N +RG ++DT+A      L K +E  + GG
Sbjct:   56 VDADTLKVLAKNGTKLIALRCAGFNNVDLKAAADNGITVVRVPAYSPYAVAEYTIGLLLSLNRKIHRAYVRVREDDFNLNGLL--GHDLHGKTIGLLGTGRIGGLVAKCLKLGFGCEVLAHD-IKPNKELEK-FGIQFVEQQE-VLAKADFLCLHCPLTPDTEHLVDEKLLASMKKGVKIINTSRGGLVDTKA------LVKAIESGQVGG 255          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: SERA_RAT (D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 1.120e-19
Identity = 60/190 (31.58%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            VTA+ I  A+ LQ++  AG G D++DL      G+ V      N +S AE     ++ L R        +  G+W+     +   +L GKT+G +G GRIG+ +  R+  F    + +D + + P++    G + +  L+ + P CD + V+TPL   T G+ +    A+ KKGV + N ARG I+D  A
Sbjct:   59 VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMLMCLARQIPQATASMKDGKWDRK--KFMGTELNGKTLGILGLGRIGREVAARMQAFGMKTVGYDPI-ISPEVAASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGA 244          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: GYAR_THEGJ (Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.120e-19
Identity = 63/224 (28.12%), Postives = 111/224 (49.55%), Query Frame = 1
Query:  247 DDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYR-----AHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            +++E P   L + + D+  L++       +  E    A  L+++    VG D++D+      G+ V         + A+     +L   R  +       SGEW   G+A+       HD+ GKT+G +G GRIG+ + +R   F   +LY+ R +  P+ E+E  A+F + L+ +L + D VV+  PLT++T  M  +  +  MK   ++ N ARG ++DT+A
Sbjct:   30 EEREIPREVLLEKVRDVDALVT--MLSERIDGEVFDNAPRLRIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLATARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPEAEEELKAEF-KPLEELLKESDFVVLAVPLTKETYHMIGERELKLMKPTAILVNIARGKVVDTEA 249          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: YEAA_SCHPO (Putative 2-hydroxyacid dehydrogenase UNK4.10 OS=Schizosaccharomyces pombe GN=SPACUNK4.10 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.911e-19
Identity = 59/180 (32.78%), Postives = 97/180 (53.89%), Query Frame = 1
Query:  364 NLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            +++ +   G G + +D+      G+ V+ V  +   + A+  +  +L  +R F  G  ++    WN       +HD EGKT+G +G G IGK + +R   F+  ++YH+R  + P+ E E GA+F    D +L K D++ +N PL   TR +  K    KMK+G++I N ARGA+MD  A
Sbjct:   80 SVKFICHLGAGYETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGALRGFNQGIFELHKNNWNAN--CKPSHDPEGKTLGILGLGGIGKTMAKRARAFDMKIVYHNRTPL-PEEEAE-GAEFVS-FDDLLAKSDVLSLNLPLNAHTRHIIGKPEFQKMKRGIVIVNTARGAVMDEAA 254          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: YGDH_SCHPO (Putative 2-hydroxyacid dehydrogenase C1773.17c OS=Schizosaccharomyces pombe GN=SPBC1773.17c PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 2.496e-19
Identity = 55/178 (30.90%), Postives = 84/178 (47.19%), Query Frame = 1
Query:  370 QLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            +L +T   G +++D++     G+ VA          A   LM  +  +R        +  G+W          D  GK VG +G G IGK   Q++ P  C ++YH+R +++ + EK  GA F    D +L   D++ +N PLT  T  +       KMK GV I N ARGAI++  A
Sbjct:   85 KLFVTGAAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRGAREAEQSLRLGKWRQN--LSLTDDPYGKRVGIIGMGAIGKSFAQKILPLGCEIVYHNRNRLEAEEEKRLGASF-VSFDELLSSSDVISINCPLTPATHDLISTKEFEKMKDGVYIINTARGAIINEDA 259          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: SERA_PONAB (D-3-phosphoglycerate dehydrogenase OS=Pongo abelii GN=PHGDH PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 2.496e-19
Identity = 60/190 (31.58%), Postives = 96/190 (50.53%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            VTA+ I  A+ LQ++  AG G D++DL      G+ V      N +S AE     I+ L R        +  G+W      +   +L GKT+G +G GRIG+ +  R+       + +D + + P++    G + +  L+ + P CD + V+TPL   T G+ + +  A+ KKGV + N ARG I+D  A
Sbjct:   59 VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGREVAIRMQSLGMKTIGYDPI-ISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGA 244          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: SERA_PIG (D-3-phosphoglycerate dehydrogenase OS=Sus scrofa GN=PHGDH PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.496e-19
Identity = 61/190 (32.11%), Postives = 94/190 (49.47%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            VT++ I  AK LQ++  AG G D++DL      G+ V      N +S AE     IL L R        +  G+W      +   +L GK +G +G GRIG+ +  R+  F    + +D + + P++    G + +  L+ + P CD + V+TPL   T G+ +    A  KKGV + N ARG I+D  A
Sbjct:   59 VTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLARQIPQATASMKDGKWERK--KFMGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDPI-IAPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFALCKKGVRVVNCARGGIVDEGA 244          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: SERA_BOVIN (D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 2.496e-19
Identity = 59/190 (31.05%), Postives = 95/190 (50.00%), Query Frame = 1
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            VT++ I  A+ LQ++  AG G D++DL      G+ V      N +S AE     I+ L R        +  G+W      +   +L GK +G +G GRIG+ +  R+  F    + +D + + P++    G + +  L+ + P CD + V+TPL   T G+ +    A+ KKGV + N ARG I+D  A
Sbjct:   59 VTSDIINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQAAASMKDGKWERK--KFMGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDPI-ISPEVSASFGVQ-QLPLEQIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVCVVNCARGGIVDEGA 244          
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: SERA_HAEIN (D-3-phosphoglycerate dehydrogenase OS=Haemophilus influenzae GN=serA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.263e-19
Identity = 65/212 (30.66%), Postives = 108/212 (50.94%), Query Frame = 1
Query:  271 ELEKHIPDLHVL-ISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            EL++ I D+H + + +  H   +TAE I+ A  L  +    +G++ +DLN     G+ V     SN  SVAE  L  IL+L+RN    + +V  G WN +     +H++ GK +G +G G IG  L         ++ ++D     P       AK    L+ +L  CD+V ++ P    T+ + +  RIA++K+G ++ N ARG ++D  A
Sbjct:   47 ELKEAIKDVHFIGLRSRTH---LTAEMIEAAPKLIAVGCFCIGTNQVDLNAAKARGIPVFNAPFSNTRSVAELVLGEILLLMRNVPQANAEVHRGVWNKSATG--SHEVRGKKLGIIGYGHIGSQLSIIAESLGMDVYFYDIENKLPL----GNAKQVRSLEELLSSCDVVSLHVPELPSTKNLMNVARIAQLKQGAILINAARGTVVDIDA 249          
The following BLAST results are available for this feature:
BLAST of DY258597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
GYAR_KORCO6.569e-2028.10Glyoxylate reductase OS=Korarchaeum cryptofilum (s... [more]
DDH1_SCHPO6.569e-2035.552-hydroxyacid dehydrogenase homolog 1 OS=Schizosac... [more]
SERA_RAT1.120e-1931.58D-3-phosphoglycerate dehydrogenase OS=Rattus norve... [more]
GYAR_THEGJ1.120e-1928.13Glyoxylate reductase OS=Thermococcus gammatolerans... [more]
YEAA_SCHPO1.911e-1932.78Putative 2-hydroxyacid dehydrogenase UNK4.10 OS=Sc... [more]
YGDH_SCHPO2.496e-1930.90Putative 2-hydroxyacid dehydrogenase C1773.17c OS=... [more]
SERA_PONAB2.496e-1931.58D-3-phosphoglycerate dehydrogenase OS=Pongo abelii... [more]
SERA_PIG2.496e-1932.11D-3-phosphoglycerate dehydrogenase OS=Sus scrofa G... [more]
SERA_BOVIN2.496e-1931.05D-3-phosphoglycerate dehydrogenase OS=Bos taurus G... [more]
SERA_HAEIN7.263e-1930.66D-3-phosphoglycerate dehydrogenase OS=Haemophilus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2CB10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258597 ID=DY258597; Name=DY258597; organism=Citrus clementina; type=EST; length=1290bp
AATTGGGAGATGGCCATGAAGAGAGTAGCTAGCTCTGCAATTAACGCTTT
TGCTTCGTCGGGATATCTTCGTTCATCGTCGAGGTTTTCTCGACACTATG
CTTCTTCTGGAAGTAAGAAGATTGTTGGGGTGTTCTACAAGGGCAATGAA
TACGCTTCAATGAATCCCAACTTTCTTGGTTGTGTGGAGGGAGGCTGTGG
TCTGCGTGAATGGCTGGAATCGAAAGGTCACCAATATATTGTCACTGATG
ACAAAGAGGGACCAGACTGTGAACTAGAGAAACATATTCCTGATCTCCAC
GTCCTCATATCTACCCCCTTCCACCCTGCCTATGTTACGGCGGAAAGGAT
TAAGAAGGCCAAAAATTTGCAACTGCTTCTCACTGCTGGAGTTGGCTCTG
ATCATATTGATCTAAATGCTGCTGCTGCTGCTGGTTTAACTGTTGCTGAA
GTTACTGGAAGCAATGTGGTTTCAGTTGCTGAGGACGAGCTTATGAGAAT
CCTTATTCTTGTCCGTAATTTCTTACCTGGACACCATCAAGTTATCAGTG
GGGAATGGAATGTTGCCGGTGTTGCTTATAGAGCTCATGATCTTGAAGGA
AAGACAGTGGGAACTGTTGGTTGTGGACGCATTGGCAAGCTGTTGCTCCA
ACGACTTANACCTTTCAATTGTAACCTCCTTTATCATGACCGGGTGAAGA
TGGATCCTCAATTGGAGAAAGAGACTGGAGCAAAATTTGAGGAGGATCTA
GATACTATGCTTCCCAAATGTGACATAGTTGTTGTCAACACCCCTCTAAC
AGAAAAGACGAGAGGGATGTTTGACAAAGATAGGATTGCAAAGATGAAGA
AGGGCGTCTTGATTGCCAACAATGCTCGAGGAGCAATCATGGACACCCAA
GCTGGTTGTTGACCCTTGCTCCTAGGGAAACCATTGGAGGGTTATAGGGG
GGGAGGTTTGGGAATCCCCAAACCCGCCTCCAAAGGACCCTCCCCTGGGG
GTTAACATGGCCAAATTCAGGAAAAGAACCCCCTCTGGTTTTTCGGGGAA
CCCTTTTTGGAGGCCCAACCTACCCTTATGCTGGCGGGGAGATCAAGGGA
ATTTGCTTTGAAAAAAAATTCTTTCCAGGGGGAAAAAAAAATTTTTTCCT
GTTTTTAAAAATTTTACAATAATGGGGGAGGGGGGGGGGGGGGAAGCCCG
GGGGCCCCCCCCCTTCAAATATTCTAAAAATAATATTTTTTTCCCCGGGT
GTTGGTGAAGAGAAAAGAACGAAGGGAAGTGTATCTGTCG
back to top