DY258597

Overview
NameDY258597
Unique NameDY258597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: GHRB_SHIBS (Glyoxylate/hydroxypyruvate reductase B OS=Shigella boydii serotype 4 (strain Sb227) GN=ghrB PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 7.516e-16
Identity = 59/192 (30.73%), Postives = 96/192 (50.00%), Query Frame = 1 
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            V A  ++K   L+   T  VG D+ D++      + +         +VA+  +  +L   R  +    +V +GEW  + G  +   D+  KT+G VG GRIG  L QR    FN  +LY+ R +   + E+   A++  DLDT+L + D V +  PLT++T  +F  ++ AKMK   +  N  RG ++D  A
Sbjct:   56 VDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNAR-RHHKEAEERFNARYC-DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKPSAIFINAGRGPVVDENA 245
[Close]
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: GHRB_ECO7I (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.516e-16
Identity = 59/192 (30.73%), Postives = 96/192 (50.00%), Query Frame = 1 
Query:  334 VTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            V A  ++K   L+   T  VG D+ D++      + +         +VA+  +  +L   R  +    +V +GEW  + G  +   D+  KT+G VG GRIG  L QR    FN  +LY+ R +   + E+   A++  DLDT+L + D V +  PLT++T  +F  ++ AKMK   +  N  RG ++D  A
Sbjct:   56 VDAVLLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNAR-RHHKEAEERFNARYC-DLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENA 245
[Close]
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: GHRB_YERPS (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.816e-16
Identity = 57/187 (30.48%), Postives = 95/187 (50.80%), Query Frame = 1 
Query:  349 IKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            ++ A NL+   T  VG D+ D+      G+ +         +VA+  +  +L   R  +    +V +GEW  + G  +   D+  KT+G +G GRIG  L QR    F+  +LY  R +     E+  GA+    LDT+L + D + +  P+TE+T  M  ++++AKMK   ++ N  RG ++D QA
Sbjct:   61 LQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSR-RPHEAAEQRFGAR-HCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQA 245
[Close]
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: GHRB_YERPP (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis (strain Pestoides F) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.816e-16
Identity = 57/187 (30.48%), Postives = 95/187 (50.80%), Query Frame = 1 
Query:  349 IKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            ++ A NL+   T  VG D+ D+      G+ +         +VA+  +  +L   R  +    +V +GEW  + G  +   D+  KT+G +G GRIG  L QR    F+  +LY  R +     E+  GA+    LDT+L + D + +  P+TE+T  M  ++++AKMK   ++ N  RG ++D QA
Sbjct:   61 LQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSR-RPHEAAEQRFGAR-HCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQA 245
[Close]
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: GHRB_YERPG (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.816e-16
Identity = 57/187 (30.48%), Postives = 95/187 (50.80%), Query Frame = 1 
Query:  349 IKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            ++ A NL+   T  VG D+ D+      G+ +         +VA+  +  +L   R  +    +V +GEW  + G  +   D+  KT+G +G GRIG  L QR    F+  +LY  R +     E+  GA+    LDT+L + D + +  P+TE+T  M  ++++AKMK   ++ N  RG ++D QA
Sbjct:   61 LQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSR-RPHEAAEQRFGAR-HCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQA 245
[Close]
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: GHRB_YERPE (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.816e-16
Identity = 57/187 (30.48%), Postives = 95/187 (50.80%), Query Frame = 1 
Query:  349 IKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            ++ A NL+   T  VG D+ D+      G+ +         +VA+  +  +L   R  +    +V +GEW  + G  +   D+  KT+G +G GRIG  L QR    F+  +LY  R +     E+  GA+    LDT+L + D + +  P+TE+T  M  ++++AKMK   ++ N  RG ++D QA
Sbjct:   61 LQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSR-RPHEAAEQRFGAR-HCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQA 245
[Close]
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: GHRB_YERPB (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.816e-16
Identity = 57/187 (30.48%), Postives = 95/187 (50.80%), Query Frame = 1 
Query:  349 IKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            ++ A NL+   T  VG D+ D+      G+ +         +VA+  +  +L   R  +    +V +GEW  + G  +   D+  KT+G +G GRIG  L QR    F+  +LY  R +     E+  GA+    LDT+L + D + +  P+TE+T  M  ++++AKMK   ++ N  RG ++D QA
Sbjct:   61 LQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSR-RPHEAAEQRFGAR-HCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQA 245
[Close]
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: GHRB_YERPA (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.816e-16
Identity = 57/187 (30.48%), Postives = 95/187 (50.80%), Query Frame = 1 
Query:  349 IKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            ++ A NL+   T  VG D+ D+      G+ +         +VA+  +  +L   R  +    +V +GEW  + G  +   D+  KT+G +G GRIG  L QR    F+  +LY  R +     E+  GA+    LDT+L + D + +  P+TE+T  M  ++++AKMK   ++ N  RG ++D QA
Sbjct:   61 LQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSR-RPHEAAEQRFGAR-HCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQA 245
[Close]
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: GHRB_YERP3 (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.816e-16
Identity = 57/187 (30.48%), Postives = 95/187 (50.80%), Query Frame = 1 
Query:  349 IKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            ++ A NL+   T  VG D+ D+      G+ +         +VA+  +  +L   R  +    +V +GEW  + G  +   D+  KT+G +G GRIG  L QR    F+  +LY  R +     E+  GA+    LDT+L + D + +  P+TE+T  M  ++++AKMK   ++ N  RG ++D QA
Sbjct:   61 LQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSR-RPHEAAEQRFGAR-HCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQA 245
[Close]
BLAST of DY258597 vs. ExPASy Swiss-Prot
Match: GHRB_SALSV (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella schwarzengrund (strain CVM19633) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.816e-16
Identity = 58/187 (31.02%), Postives = 93/187 (49.73%), Query Frame = 1 
Query:  349 IKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA-GVAYRAHDLEGKTVGTVGCGRIGKLLLQRLX-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIANNARGAIMDTQA 903
            ++K   L+   T  VG D+++++      + +         +VA+  +  +L   R  +    +V +GEW  + G A+   D+  KT+G VG GRIG  L QR    F   +LYH R +   + E    A++  DLDT+L + D V V  PLT +TR +F   + A+MK   +  N  RG ++D  A
Sbjct:   61 LEKMSALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHAR-RRHQEAEDRFNARYC-DLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENA 245
The following BLAST results are available for this feature:
BLAST of DY258597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
GHRB_SHIBS7.516e-1630.73Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
GHRB_ECO7I7.516e-1630.73Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_YERPS9.816e-1630.48Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPP9.816e-1630.48Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPG9.816e-1630.48Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPE9.816e-1630.48Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPB9.816e-1630.48Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPA9.816e-1630.48Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERP39.816e-1630.48Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_SALSV9.816e-1631.02Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CB10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258597 ID=DY258597; Name=DY258597; organism=Citrus clementina; type=EST; length=1290bp
AATTGGGAGATGGCCATGAAGAGAGTAGCTAGCTCTGCAATTAACGCTTT
TGCTTCGTCGGGATATCTTCGTTCATCGTCGAGGTTTTCTCGACACTATG
CTTCTTCTGGAAGTAAGAAGATTGTTGGGGTGTTCTACAAGGGCAATGAA
TACGCTTCAATGAATCCCAACTTTCTTGGTTGTGTGGAGGGAGGCTGTGG
TCTGCGTGAATGGCTGGAATCGAAAGGTCACCAATATATTGTCACTGATG
ACAAAGAGGGACCAGACTGTGAACTAGAGAAACATATTCCTGATCTCCAC
GTCCTCATATCTACCCCCTTCCACCCTGCCTATGTTACGGCGGAAAGGAT
TAAGAAGGCCAAAAATTTGCAACTGCTTCTCACTGCTGGAGTTGGCTCTG
ATCATATTGATCTAAATGCTGCTGCTGCTGCTGGTTTAACTGTTGCTGAA
GTTACTGGAAGCAATGTGGTTTCAGTTGCTGAGGACGAGCTTATGAGAAT
CCTTATTCTTGTCCGTAATTTCTTACCTGGACACCATCAAGTTATCAGTG
GGGAATGGAATGTTGCCGGTGTTGCTTATAGAGCTCATGATCTTGAAGGA
AAGACAGTGGGAACTGTTGGTTGTGGACGCATTGGCAAGCTGTTGCTCCA
ACGACTTANACCTTTCAATTGTAACCTCCTTTATCATGACCGGGTGAAGA
TGGATCCTCAATTGGAGAAAGAGACTGGAGCAAAATTTGAGGAGGATCTA
GATACTATGCTTCCCAAATGTGACATAGTTGTTGTCAACACCCCTCTAAC
AGAAAAGACGAGAGGGATGTTTGACAAAGATAGGATTGCAAAGATGAAGA
AGGGCGTCTTGATTGCCAACAATGCTCGAGGAGCAATCATGGACACCCAA
GCTGGTTGTTGACCCTTGCTCCTAGGGAAACCATTGGAGGGTTATAGGGG
GGGAGGTTTGGGAATCCCCAAACCCGCCTCCAAAGGACCCTCCCCTGGGG
GTTAACATGGCCAAATTCAGGAAAAGAACCCCCTCTGGTTTTTCGGGGAA
CCCTTTTTGGAGGCCCAACCTACCCTTATGCTGGCGGGGAGATCAAGGGA
ATTTGCTTTGAAAAAAAATTCTTTCCAGGGGGAAAAAAAAATTTTTTCCT
GTTTTTAAAAATTTTACAATAATGGGGGAGGGGGGGGGGGGGGAAGCCCG
GGGGCCCCCCCCCTTCAAATATTCTAAAAATAATATTTTTTTCCCCGGGT
GTTGGTGAAGAGAAAAGAACGAAGGGAAGTGTATCTGTCG
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