DY258599

Overview
NameDY258599
Unique NameDY258599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1014
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15314 contig Ccv1_Contig15314:25..1038. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258599 vs. ExPASy Swiss-Prot
Match: CHI2_COCP7 (Endochitinase 2 OS=Coccidioides posadasii (strain C735) GN=CTS2 PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 9.114e-24
Identity = 81/301 (26.91%), Postives = 128/301 (42.52%), Query Frame = 2
Query:   29 VSLLVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKF---GNGQTPEINLAGHCNPA------------AGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXD--AKNVADYLWNNFLGGT---SSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRG--KKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNNPPCQYSS--GNTQNLISSFNRWASSLRN-----GKLFLGL-XXXXXXXXSGYIPPNVLTSQVLPQIKTSP-RYGGVML 838
            VS L   SL         +A+YWGQ   +  L+  C    +  + + F+N F   G    P  N    C  +              GC  + + +  C++ G  ++                +  A N AD+LW  F   T   +  RP G A +DG DFDIE+GS   +  + R L     +    + Y++AAPQC  PD++L  A++   FD++++QFYNNP C       N +++  + + W   +R       KLF+GL           Y+ P   T  V   +   P  +GG+M+
Sbjct:   13 VSSLFIQSLALNPYAKSNLAVYWGQGAGQNRLSYFCEKTSFDIIVVGFINVFPDQGPAGWPGSNFGNQCADSYYYTKNGTKTKLLDGCYQIKEDLPKCKALGKTILLSLGGGAVHDFYEVKSEESALNFADFLWGAFGPLTPDWTGPRPFGEASVDGFDFDIEKGSNFGYSIMVRRLRELFLQDPLNRYYISAAPQCIMPDKYLSHAISNSAFDFIFIQFYNNPSCSAKRWVTNPKSVTYTVDDWVKYIRKSGNPLAKLFIGLPASKSAAAKEDYLTPGEATKIVSTYMAKYPSTFGGMMV 313          
BLAST of DY258599 vs. ExPASy Swiss-Prot
Match: CHI2_COCIM (Endochitinase 2 OS=Coccidioides immitis GN=CTS2 PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 9.114e-24
Identity = 81/301 (26.91%), Postives = 128/301 (42.52%), Query Frame = 2
Query:   29 VSLLVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKF---GNGQTPEINLAGHCNPA------------AGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXD--AKNVADYLWNNFLGGT---SSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRG--KKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNNPPCQYSS--GNTQNLISSFNRWASSLRN-----GKLFLGL-XXXXXXXXSGYIPPNVLTSQVLPQIKTSP-RYGGVML 838
            VS L   SL         +A+YWGQ   +  L+  C    +  + + F+N F   G    P  N    C  +              GC  + + +  C++ G  ++                +  A N AD+LW  F   T   +  RP G A +DG DFDIE+GS   +  + R L     +    + Y++AAPQC  PD++L  A++   FD++++QFYNNP C       N +++  + + W   +R       KLF+GL           Y+ P   T  V   +   P  +GG+M+
Sbjct:   13 VSSLFIQSLALNPYAKSNLAVYWGQGAGQNRLSYFCEKTSFDIIVVGFINVFPDQGPAGWPGSNFGNQCADSYYYTKNGTKTKLLDGCYQIKEDLPKCKALGKTILLSLGGGAVHDFYEVKSEESALNFADFLWGAFGPLTPDWTGPRPFGEASVDGFDFDIEKGSNFGYSIMVRRLRELFLQDPLNRYYISAAPQCIMPDKYLSHAISNSAFDFIFIQFYNNPSCSAKRWVTNPKSVTYTVDDWVKYIRKSGNPLAKLFIGLPASKSAAAKEDYLTPGEATKIVSTYMAKYPSTFGGMMV 313          
BLAST of DY258599 vs. ExPASy Swiss-Prot
Match: CHLY_PARTH (Bifunctional chitinase/lysozyme (Fragment) OS=Parthenocissus quinquefolia PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.043e-19
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 2
Query:   77 GGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLA 217
            GGIAIYWGQNGNEGTLT TC TGKY+YVNIAFLNKFGNGQTPEINLA
Sbjct:    1 GGIAIYWGQNGNEGTLTQTCNTGKYSYVNIAFLNKFGNGQTPEINLA 47          
BLAST of DY258599 vs. ExPASy Swiss-Prot
Match: YKT4_SCHPO (Chitinase-like protein PB1E7.04c OS=Schizosaccharomyces pombe GN=SPAPB1E7.04c PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.962e-19
Identity = 78/288 (27.08%), Postives = 126/288 (43.75%), Query Frame = 2
Query:   32 SLLVTLSLIKASQGAGGIAIYWGQN-------GNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPA---AGG----CRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLA-RFLSAYSS-RGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNNPPCQYSSGNTQNLISSFNRWASSL---RNGKLFLGLXXXXXXXXSGYIPPNVLTSQVLPQIKTSPRYGGVML 838
            S  + LSL   +Q A  +  YWG N        ++  L+S C    Y  + ++ +  F     P  + +  C+ +   +G     C  +   I+ CQ  GIKV+                D  N A  +WN F  G  S RP G AV+DG D ++ +G+   +   A R L  Y+S   +K Y++AAP C  PD  L  A++   FD++ +  +N+   +  SG+  +   ++  +A       N  LF G+        +G+I P  LT  +L     S  +GGV +
Sbjct:   13 SARLALSLNLTNQTA--VLGYWGSNLAGKMGDRDQKRLSSYCQNTTYDAIILSSVIDFNVDGWPVYDFSNLCSDSDTFSGSELKKCPQIETDIQVCQENGIKVLLSIGGYNGNFSLNNDDDGTNFAFQVWNIFGSGEDSYRPFGKAVVDGFDLEVNKGTNTAYSAFAKRMLEIYASDPRRKYYISAAPTCMVPDHTLTKAISENSFDFLSIHTFNSSTGEGCSGSRNSTFDAWVEYAEDSAYNTNTSLFYGV-VGHQNGSNGFISPKNLTRDLLNYKANSTLFGGVTI 297          
The following BLAST results are available for this feature:
BLAST of DY258599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CHI2_COCP79.114e-2426.91Endochitinase 2 OS=Coccidioides posadasii (strain ... [more]
CHI2_COCIM9.114e-2426.91Endochitinase 2 OS=Coccidioides immitis GN=CTS2 PE... [more]
CHLY_PARTH1.043e-1993.62Bifunctional chitinase/lysozyme (Fragment) OS=Part... [more]
YKT4_SCHPO3.962e-1927.08Chitinase-like protein PB1E7.04c OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CB12FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258599 ID=DY258599; Name=DY258599; organism=Citrus clementina; type=EST; length=1014bp
CAGAAACTCTCCAGCAATAGCAACATTCGTCTCCCTGCTGGTCACTCTGT
CATTGATCAAAGCCTCTCAAGGCGCCGGCGGCATCGCAATCTATTGGGGC
CAAAACGGCAACGAGGGTACCCTCACTTCAACCTGTGCCACAGGCAAATA
TGCTTATGTCAACATAGCTTTCCTGAACAAGTTTGGCAACGGCCAGACCC
CTGAAATTAACCTTGCCGGCCACTGCAACCCTGCAGCCGGTGGCTGCAGA
GTCGTCAGCGACGCAATCAAGAGTTGTCAGAGCCGAGGCATCAAAGTTAT
GCTTTCCCTCGGAGGTGGGGTTGGTAGCTACTCTTTGGCTTCTGTAGCTG
ATGCCAAGAATGTAGCTGATTACTTGTGGAACAATTTCTTGGGGGGAACA
TCAAGTTCAAGGCCATTAGGTGCTGCTGTGTTGGACGGTATTGATTTTGA
TATTGAGCAAGGCTCAACTTTGCATTGGGATGACCTTGCAAGGTTTCTAT
CAGCATATAGCAGCCGTGGCAAGAAAGTTTACTTAACAGCAGCTCCCCAG
TGCCCATTTCCTGATAGGTTTCTGGGTGCTGCTTTGAACACGGGGCTTTT
TGATTATGTATGGGTTCAGTTTTACAACAACCCACCTTGTCAGTATAGTT
CAGGAAATACCCAGAATCTTATAAGTTCATTTAACAGATGGGCTTCATCA
TTGAGAAATGGGAAGTTGTTTTTGGGGCTGCCAGCAGCTCCTGCTGCCGC
ANGCAGCGGGTATATTCCACCGAATGTGTTAACTTCTCAGGTACTTCCTC
AGATCAAAACGTCGCCCAGGTATGGCGGTGTCATGCTTTGTTCAAATTTT
TTGGAGATCAGAAAGGGGTACAGTTTCTCCCATCGAACAAGTGTTTGAAG
CAAGTCAAGCAAAACACCCAGTAGCTCCCAAGGAAGGTGCAAAATAATAA
AAAAATGGAAGGAAAATGCCGGAAATTGGCAATCCAACCAAATAAAAAAA
ATGGGGCCTCCAAT
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