DY258604

Overview
NameDY258604
Unique NameDY258604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_CYTH3 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=dut PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.898e-21
Identity = 62/146 (42.47%), Postives = 88/146 (60.27%), Query Frame = 3
Query:  114 NIGSLLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARG--KALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            N+ + +++   S  A LP   +  AAG DLS+     +  +   + LVPT L I +PE T A+I PRSGLA+KH + V    G IDADYRG + V+L N S+  F ++ G+RIAQ++I K+     +EVE L  ++R   GFGSTG
Sbjct:    9 NMTTSVKIVNKSNNA-LPAYQTAQAAGMDLSAYITEAIVLQPLQRQLVPTGLFIELPEHTEAQIRPRSGLAFKHGITVLNSPGTIDADYRGEIKVLLVNLSNEAFTIQSGERIAQIVIAKVEHAHFVEVEELSDSLRAAAGFGSTG 153          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_CORJK (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Corynebacterium jeikeium (strain K411) GN=dut PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.898e-21
Identity = 61/144 (42.36%), Postives = 86/144 (59.72%), Query Frame = 3
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFVVKVGDRIAQLIIEKIVTPDVLE---VENLDSTVRGEGGFGSTGV 542
            LR+ +L ++  LP+R  P  AG DL +A +  +    + LV T ++IA+P GT   + PRSGLA K  + +    G IDADYRG + V L N   +    +  G+RIAQL+++++   DV E   VE L  TVRGE G+GSTGV
Sbjct:   12 LRIVRLDKELPLPRRAHPTDAGIDLYTAQDVTIAPGCRELVGTGIAIALPVGTVGLVHPRSGLALKKGLSIVNAPGTIDADYRGEIKVCLINLDPEEPIELARGERIAQLLVQEVSLCDVEEVNSVEELGVTVRGESGYGSTGV 155          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_CAUCR (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Caulobacter crescentus GN=dut PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.898e-21
Identity = 62/149 (41.61%), Postives = 85/149 (57.05%), Query Frame = 3
Query:  120 GSLLRVKKLSEKAVLPKRGSPL--AAGYDLSSAAETKVPA----RGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            G  +R K+    A LP        AAG+DL +      P       + + PT  S+AIP+G   ++ PRSGLA K+ + V    G +D+DYRG V V+L N  + DF ++ GDRIAQ +I       ++EVE+LD+T RG GGFGSTGV
Sbjct:    7 GLAIRFKRWEGNADLPVPAYATVGAAGFDLRAHVPDDAPIVLKPGARCMAPTGFSVAIPDGYEMQVRPRSGLALKNGVTVVNAPGTVDSDYRGQVCVLLINLGEEDFTIRRGDRIAQGVIAAAPQWPLVEVEDLDATERGAGGFGSTGV 155          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_CAUCN (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=dut PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.898e-21
Identity = 62/149 (41.61%), Postives = 85/149 (57.05%), Query Frame = 3
Query:  120 GSLLRVKKLSEKAVLPKRGSPL--AAGYDLSSAAETKVPA----RGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            G  +R K+    A LP        AAG+DL +      P       + + PT  S+AIP+G   ++ PRSGLA K+ + V    G +D+DYRG V V+L N  + DF ++ GDRIAQ +I       ++EVE+LD+T RG GGFGSTGV
Sbjct:    7 GLAIRFKRWEGNADLPVPAYATVGAAGFDLRAHVPDDAPIVLKPGARCMAPTGFSVAIPDGYEMQVRPRSGLALKNGVTVVNAPGTVDSDYRGQVCVLLINLGEEDFTIRRGDRIAQGVIAAAPQWPLVEVEDLDATERGAGGFGSTGV 155          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_BRASB (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=dut PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.898e-21
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  162 LPKRGSPLAAGYDLSSAAETKVPA----RGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            LP   +  AAG DL +A     P        A+VPT LS+A+P+G  A++ PRSGLA +H + V    G +DADYRG + V+L NH    F ++ G+RIAQ++I  +    +     L +T RG GGFGSTG
Sbjct:   20 LPAYQTAHAAGMDLLAAVAADAPLVLGPGSHAMVPTGLSLALPDGYEAQVRPRSGLAARHGVTVLNAPGTVDADYRGEICVLLINHGKEPFTIRRGERIAQMVIAAVARAALSITTTLSATARGSGGFGSTG 151          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_SPHWW (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dut PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.784e-21
Identity = 63/141 (44.68%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  129 LRVKKLSEKA--VLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            +++K+L   A   LP   +  AAG D+ SA +  +    +  V T  +IAIPEG   ++ PRSGLA KH +      G IDADYRG V VIL N     F VK G+RIAQL+   +      EV +LD T RG GGFGSTG
Sbjct:    8 IKLKRLDHGAGLPLPAYATAHAAGLDVVSAEDVTLAPGARHAVATGFAIAIPEGYEVQVRPRSGLALKHGVTCLNTPGTIDADYRGEVKVILANLGSEPFEVKRGERIAQLVPAAVQRAAFAEVSDLDETARGAGGFGSTG 148          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_FLAJ1 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=dut PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.784e-21
Identity = 61/131 (46.56%), Postives = 81/131 (61.83%), Query Frame = 3
Query:  162 LPKRGSPLAAGYDLSSAAETKVPARG--KALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            LP   +  +AG DL +     +  +   + +V T L I +P G  A++ PRSGLA K  + V    G +DADYRG +GVIL N S+ +FV++ G+RIAQLII K    + +EVE L  T RGEGGFGSTGV
Sbjct:   13 LPNYETIASAGMDLRANIIEPITLKPLERTIVKTGLFIELPIGYEAQVRPRSGLAAKKGVTVLNSPGTVDADYRGEIGVILVNLSNEEFVIENGERIAQLIIAKHERAEWIEVEELSETSRGEGGFGSTGV 143          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_ANADF (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=dut PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.784e-21
Identity = 59/138 (42.75%), Postives = 80/138 (57.97%), Query Frame = 3
Query:  132 RVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            RV +      LP+  +  AAG DL +     +    + LVPT L++ IP G   ++ PRSGLA +H + +    G ID+DYRG VGV+L NH         GDRIAQL+I  +V  ++  VE+L S+ RG GGFGSTG
Sbjct:    9 RVGQRGPPLELPRYETDGAAGLDLRADEPVTLAPGERRLVPTGLALEIPPGHEGQVRPRSGLAVRHGVGMVNAPGTIDSDYRGEVGVVLVNHGQEPVTFARGDRIAQLVIGPVVRAELALVEDLASSGRGGGGFGSTG 146          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_FUSNN (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Fusobacterium nucleatum subsp. nucleatum GN=dut PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.943e-21
Identity = 58/142 (40.85%), Postives = 88/142 (61.97%), Query Frame = 3
Query:  129 LRVKKLSEKAV-LPKRGSPLAAGYDLSSAAETKVPARG--KALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            ++VK + E+ V LPK  +  +AG D+ +  +  +  +   + LVPT L +AIPEG   ++ PRSGLA KH + +    G +D+DYRG + VI+ N S+  + ++  +RI Q ++ KI   + +EVE LDST RGE GFG TG
Sbjct:    4 VQVKVIREEGVELPKYETEGSAGMDVRANIKESITLKSLERILVPTGLKVAIPEGYEIQVRPRSGLAIKHGITMLNTPGTVDSDYRGELKVIVVNLSNEAYTIEPNERIGQFVLNKIEQIEFVEVEELDSTERGESGFGHTG 145          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_BACV8 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=dut PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.943e-21
Identity = 59/133 (44.36%), Postives = 82/133 (61.65%), Query Frame = 3
Query:  153 KAVLPKRGSPLAAGYDLSSAAETKVPARG--KALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            K  LP+  +  +AG D+ +  +  +  +   + LVPT L IA+PEG  A+I PRSGLA K  + V    G IDADYRG + +IL N S  DF+++ G+RIAQ+++ +    +  EVE LD T RG GGFG TG
Sbjct:   10 KHALPEYATGQSAGMDIRANLDEPIVLKPLQRCLVPTGLYIALPEGFEAQIRPRSGLAIKKGIGVLNSPGTIDADYRGEICIILVNLSSEDFMIEDGERIAQMVVARHEHAEWQEVEVLDETERGAGGFGHTG 142          
The following BLAST results are available for this feature:
BLAST of DY258604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 440
Match NameE-valueIdentityDescription
DUT_CYTH32.898e-2142.47Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_CORJK2.898e-2142.36Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_CAUCR2.898e-2141.61Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_CAUCN2.898e-2141.61Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_BRASB2.898e-2142.42Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_SPHWW3.784e-2144.68Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_FLAJ13.784e-2146.56Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_ANADF3.784e-2142.75Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_FUSNN4.943e-2140.85Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_BACV84.943e-2144.36Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CC08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258604 ID=DY258604; Name=DY258604; organism=Citrus clementina; type=EST; length=793bp
CACTAAAGCTTGTTTTCAAAATGGCCCCAGCAGTTCAGCAAAATGGCAGC
CCAGAAGTCAAAGAGCCTTCTCCAAAGATCCCAAAACTACACCAGAACGG
CGTCGAAAATGACAACATAGGCTCTCTCTTGAGAGTTAAAAAGCTCTCCG
AAAAGGCTGTTTTGCCCAAAAGAGGCTCCCCTCTTGCCGCTGGCTACGAT
CTCTCCAGTGCTGCGGAGACTAAGGTGCCAGCAAGGGGAAAAGCTCTTGT
TCCAACAGATCTGAGCATCGCAATACCCGAAGGAACATATGCACGTATTG
CGCCAAGATCGGGACTGGCGTGGAAGCACTCAATGGACGTGGGAGCCGGG
GTGATTGATGCGGATTACAGGGGCCCTGTTGGGGTGATTTTGTTTAATCA
TTCTGATGTTGATTTTGTGGTGAAAGTGGGTGATAGAATTGCTCAATTAA
TAATTGAGAAAATCGTGACTCCTGATGTGTTGGAGGTTGAGAACTTGGAC
TCTACTGTCAGAGGAGAAGGTGGTTTTGGCTCTACTGGGGTTTGAATTTC
TTTGTTGAAGACTATGCGTTGTTGCATATGTTTTGTTTTTATGGTAATGT
TAGTTCAGGTCTCTGGGTAGTTTTGTCGGGCAGCTGGTGTACAGGCTATT
GGCTTGTTTTGCTGTCTTGATTTGTAAACAACTTGGTAAGTAGTATTGGC
ATGGAAGAAATGGCATGTATCCTCTTGTTGTTTCTATCTATATAACAACA
TTTGGGTTTGTTTTGGCTGTAAATTTACTGATGCTAAGCTTAT
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