DY258604

Overview
NameDY258604
Unique NameDY258604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_CHLTE (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Chlorobium tepidum GN=dut PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 5.452e-28
Identity = 68/142 (47.89%), Postives = 91/142 (64.08%), Query Frame = 3
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSA--AETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKH--SMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            +++ +L++KA+LP   +  AAG D+S+   A   VP+   AL+PT  +I +PEG  A++ PRSGLA +H  S+      IDADYRG VGVIL NH    F V  GDRIAQ+++ K+      EVE+L  T RGEGGFG TGV
Sbjct:    4 VKIVRLNQKAILPVYATAHAAGMDVSACLDAPVTVPSSASALIPTGFAIELPEGYEAQLRPRSGLALRHCISLPNSPATIDADYRGEVGVILINHGREPFTVSHGDRIAQMVVAKVDHVVFEEVESLSETARGEGGFGHTGV 145          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_PELCD (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=dut PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.534e-27
Identity = 67/141 (47.52%), Postives = 90/141 (63.83%), Query Frame = 3
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARG--KALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            ++VK+L  KA+LP   SP AAG DL +  + +V  +   + +VPT +++AIP G   ++ PRSGLA  H + +    G IDADYRG +G+I+ NH D DFVV  GDRIAQL+I  +    +  VE LD T R EGGFG TG
Sbjct:    6 IKVKRLHSKAMLPAYMSPHAAGMDLYACPDGEVVVKPGCRTIVPTGIALAIPVGYEGQVRPRSGLALHHGVTLVNTPGTIDADYRGELGIIIINHGDEDFVVSPGDRIAQLVIAPVHRAVLETVEELDETDRNEGGFGHTG 146          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_CYAA5 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Cyanothece sp. (strain ATCC 51142) GN=dut PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.615e-27
Identity = 65/140 (46.43%), Postives = 86/140 (61.43%), Query Frame = 3
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            +++ KL EKA++PK      +G DL S    ++P+    LV T +SI +P  T A+I PRSGLA KH + V    G ID  YRG +GVIL NH    F V  G RIAQ++I  ++   + EVE L  T+RG+GGFGSTGV
Sbjct:    3 IKIIKLKEKAIIPKYEHDNDSGLDLVSTETVEIPSGESKLVKTGISIELPPNTEAQIRPRSGLALKHQITVLNTPGTIDEGYRGEIGVILINHGKRSFKVTEGMRIAQMVIAPVIRVKIQEVEQLSDTIRGQGGFGSTGV 142          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_WOLSU (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Wolinella succinogenes GN=dut PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.028e-26
Identity = 64/139 (46.04%), Postives = 88/139 (63.31%), Query Frame = 3
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            +R+ KL   AV+P   S  AAG+DL      ++P  G+ALV T L++A+ EG   +I PRSGLA KH + V    G +D+DYRG + VIL N     F ++ GDRIAQ ++ ++   ++ EVE+LD T RG GGFGSTG
Sbjct:    9 IRLLKLHPNAVIPAYQSAGAAGFDLCCVESLEIPPLGRALVSTGLALALEEGYELQIRPRSGLALKHGITVLNTPGTVDSDYRGEIKVILINLGAESFSIQAGDRIAQGVVSRLSIAELCEVESLDETARGAGGFGSTG 147          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_CHLP8 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Chlorobaculum parvum (strain NCIB 8327) GN=dut PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.028e-26
Identity = 67/142 (47.18%), Postives = 88/142 (61.97%), Query Frame = 3
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPAR--GKALVPTDLSIAIPEGTYARIAPRSGLAWKH--SMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            +++ +L EKA LP   +  AAG D+S+  +  V       AL+PT L+I +PEG  A++ PRSGLA +H  S+      IDADYRG VGVIL NH    F V  GDRIAQ+++ K+      EV++L  T RGEGGFG TGV
Sbjct:    4 VKIVRLKEKASLPAYATAHAAGMDVSACLDAPVTLEPSSSALIPTGLAIELPEGYEAQLRPRSGLALRHLISLPNSPATIDADYRGEVGVILINHGREPFTVNHGDRIAQMVVSKVDRVAFEEVDSLSDTERGEGGFGHTGV 145          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_ACAM1 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Acaryochloris marina (strain MBIC 11017) GN=dut PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.343e-26
Identity = 64/139 (46.04%), Postives = 88/139 (63.31%), Query Frame = 3
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            +++ KL+E A +P+      AG DL +    K+     AL+PT ++I +P+GT A++ PRSGLA KHS+ V    G IDA YRG +GVIL NH    F V  G +IAQ++I  I+  ++ EV  L +T RGEGGFGSTG
Sbjct:    3 IKIIKLTESAQVPRYSHADDAGLDLFAIEAQKILPGASALIPTGIAIELPQGTEAQVRPRSGLALKHSITVLNSPGTIDAGYRGEIGVILINHGQETFQVVEGMKIAQMVIAPIMRAEIEEVTELSATQRGEGGFGSTG 141          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_RHOPS (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Rhodopseudomonas palustris (strain BisB5) GN=dut PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.992e-26
Identity = 69/150 (46.00%), Postives = 90/150 (60.00%), Query Frame = 3
Query:  108 NDNIGSLLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVP---ARGK-ALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            +D I   ++    +E   LP   S  AAG DL +A     P   A G   LVPT L+IA+PE   A++ PRSGLA KH + V    G IDADYRG +GV+L NH D  F ++ G+RIAQ++I  +V  +++ VE L  T RG GGFGSTG
Sbjct:    2 SDTIAVEIKQLPHAEGLPLPAYQSAHAAGLDLCAANSADAPLLLAPGSYVLVPTGLTIALPENYEAQVRPRSGLAAKHGVTVLNAPGTIDADYRGEIGVLLINHGDAPFTIRRGERIAQMVIAPVVRAELIGVETLSETARGVGGFGSTG 151          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_CYAP7 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Cyanothece sp. (strain PCC 7424) GN=dut PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.665e-26
Identity = 63/140 (45.00%), Postives = 87/140 (62.14%), Query Frame = 3
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            L+V KL + A+LPK      +G DLS+  + ++P     LVPT ++I +P  T A+I PRSGLA KH + V    G +D  YRG +GVIL NH    F V  G +IAQ++I  ++  +V EV++L  T RG GGFGSTG+
Sbjct:    3 LKVTKLEKAAILPKYVHSDDSGLDLSAIEDLEIPPGESQLVPTGIAIELPPNTEAQIRPRSGLALKHQITVLNTPGTVDEGYRGEIGVILINHGKNSFKVTRGMKIAQMVIAPVIRVEVEEVDHLSDTTRGSGGFGSTGL 142          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_CHLT3 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=dut PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.704e-26
Identity = 70/142 (49.30%), Postives = 88/142 (61.97%), Query Frame = 3
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAET--KVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKH--SMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            +  KKL  +A LPK  +  AAG D+S+  +    V A+  ALVPT L++ IP G  A++ PRSGLA KH  S+      IDAD+RG + VIL NH    F VK GDRIAQ++I K+    V+EV  L  T RGEGGFG TGV
Sbjct:    4 IHCKKLHPEARLPKYATEGAAGMDISACLDEPISVEAQSVALVPTGLALEIPPGYEAQLRPRSGLALKHLISLPNAPATIDADFRGELKVILINHGKDAFEVKHGDRIAQMVIAKVEKVAVVEVAALSETKRGEGGFGHTGV 145          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_HELHP (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Helicobacter hepaticus GN=dut PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.137e-25
Identity = 61/140 (43.57%), Postives = 88/140 (62.86%), Query Frame = 3
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            +++KKL   AV+P   +P AAG+DL +  ++ + AR + LV T L+  I  G   ++ PRSGLA  + + V    G ID+DYRG + VIL NHS+ DF +  GDRIAQ ++ ++      EV+ L  +VRGE GFGS+GV
Sbjct:    7 IKIKKLHSHAVIPSYQTPQAAGFDLHAVEDSLIKARDRGLVGTGLAFEIESGFEVQVRPRSGLALHNGVSVLNTPGTIDSDYRGEIKVILINHSNEDFHIHRGDRIAQAVVSEVTQAVFTEVQELGQSVRGERGFGSSGV 146          
The following BLAST results are available for this feature:
BLAST of DY258604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 440
Match NameE-valueIdentityDescription
DUT_CHLTE5.452e-2847.89Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_PELCD3.534e-2747.52Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_CYAA54.615e-2746.43Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_WOLSU1.028e-2646.04Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_CHLP81.028e-2647.18Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_ACAM11.343e-2646.04Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_RHOPS2.992e-2646.00Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_CYAP76.665e-2645.00Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_CHLT38.704e-2649.30Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_HELHP1.137e-2543.57Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CC08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258604 ID=DY258604; Name=DY258604; organism=Citrus clementina; type=EST; length=793bp
CACTAAAGCTTGTTTTCAAAATGGCCCCAGCAGTTCAGCAAAATGGCAGC
CCAGAAGTCAAAGAGCCTTCTCCAAAGATCCCAAAACTACACCAGAACGG
CGTCGAAAATGACAACATAGGCTCTCTCTTGAGAGTTAAAAAGCTCTCCG
AAAAGGCTGTTTTGCCCAAAAGAGGCTCCCCTCTTGCCGCTGGCTACGAT
CTCTCCAGTGCTGCGGAGACTAAGGTGCCAGCAAGGGGAAAAGCTCTTGT
TCCAACAGATCTGAGCATCGCAATACCCGAAGGAACATATGCACGTATTG
CGCCAAGATCGGGACTGGCGTGGAAGCACTCAATGGACGTGGGAGCCGGG
GTGATTGATGCGGATTACAGGGGCCCTGTTGGGGTGATTTTGTTTAATCA
TTCTGATGTTGATTTTGTGGTGAAAGTGGGTGATAGAATTGCTCAATTAA
TAATTGAGAAAATCGTGACTCCTGATGTGTTGGAGGTTGAGAACTTGGAC
TCTACTGTCAGAGGAGAAGGTGGTTTTGGCTCTACTGGGGTTTGAATTTC
TTTGTTGAAGACTATGCGTTGTTGCATATGTTTTGTTTTTATGGTAATGT
TAGTTCAGGTCTCTGGGTAGTTTTGTCGGGCAGCTGGTGTACAGGCTATT
GGCTTGTTTTGCTGTCTTGATTTGTAAACAACTTGGTAAGTAGTATTGGC
ATGGAAGAAATGGCATGTATCCTCTTGTTGTTTCTATCTATATAACAACA
TTTGGGTTTGTTTTGGCTGTAAATTTACTGATGCTAAGCTTAT
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