DY258604

Overview
NameDY258604
Unique NameDY258604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_CHLL2 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=dut PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.621e-22
Identity = 60/142 (42.25%), Postives = 85/142 (59.86%), Query Frame = 3
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPAR--GKALVPTDLSIAIPEGTYARIAPRSGLAWKH--SMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            +++ ++++KA LP   +  AAG D+++  +  V       AL+P+  +I +PEG  A++ PRSGLA KH  S+      IDADYRG V VIL N     F V  GDRIAQ+++ ++   D  E E L  T RGEGGFG TG+
Sbjct:    4 VKIVRVNKKAHLPVYATAHAAGMDVAACLDEPVMLEPFSTALIPSGFAIELPEGYEAQLRPRSGLALKHLISLPNSPATIDADYRGEVRVILVNFGKEPFSVAHGDRIAQMVVSRVERVDFDEAEELSMTQRGEGGFGHTGI 145          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_RHOPT (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Rhodopseudomonas palustris (strain TIE-1) GN=dut PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.423e-22
Identity = 60/132 (45.45%), Postives = 79/132 (59.85%), Query Frame = 3
Query:  162 LPKRGSPLAAGYDLSSAAETKVPARGK----ALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            LP+  +  AAG DL +A     P   +     LVPT L+IA+PE   A++ PRSGLA KH + V    G IDADYRG +GV+L NH    F ++ G+RIAQ++I  +     + VE L  + RG GGFGSTG
Sbjct:   20 LPEYQTAHAAGLDLIAAVPQDAPLTLQPGRYVLVPTGLTIALPENYEAQVRPRSGLAAKHGVTVLNAPGTIDADYRGEIGVLLINHGTEPFAIRRGERIAQMVIAPVSRAQFVAVEALPESGRGAGGFGSTG 151          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_RHOPA (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Rhodopseudomonas palustris GN=dut PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.423e-22
Identity = 60/132 (45.45%), Postives = 79/132 (59.85%), Query Frame = 3
Query:  162 LPKRGSPLAAGYDLSSAAETKVPARGK----ALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            LP+  +  AAG DL +A     P   +     LVPT L+IA+PE   A++ PRSGLA KH + V    G IDADYRG +GV+L NH    F ++ G+RIAQ++I  +     + VE L  + RG GGFGSTG
Sbjct:   20 LPEYQTAHAAGLDLIAAVPQDAPLTLQPGRYVLVPTGLTIALPENYEAQVRPRSGLAAKHGVTVLNAPGTIDADYRGEIGVLLINHGTEPFAIRRGERIAQMVIAPVSRAQFVAVEALPESGRGAGGFGSTG 151          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_PROA2 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=dut PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.423e-22
Identity = 58/142 (40.85%), Postives = 87/142 (61.27%), Query Frame = 3
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGK--ALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            + + ++++ A+LP+  +  AAG D+++  +  +  +     LVPT L++ +PEG  A++ PRSGLA K+++ +      IDADYRG V VIL N     F V  GDRIAQ++I +    ++ EVE L  T RG GGFG TGV
Sbjct:    4 VNIVRVNKNAILPRYATQHAAGMDIAACLDVPLTIQPSETVLVPTGLAVELPEGYEAQLRPRSGLALKYAISLPNAPATIDADYRGEVKVILVNLGQEPFCVNHGDRIAQMVIARYEHAELQEVEELSRTPRGSGGFGHTGV 145          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_GEOSF (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Geobacter sp. (strain FRC-32) GN=dut PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.470e-22
Identity = 59/140 (42.14%), Postives = 82/140 (58.57%), Query Frame = 3
Query:  153 KAVLPKRGSPL-------AAGYDLSSAAETKVPARG--KALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            K + P++G+PL       AAG DL +  + ++      + LVPT ++I +PEG  A+I PRSGLA KH + +    G IDADYRG +GVI+ NH +  FV+   +RIAQ++          +V  L  T RGEGGFG TG
Sbjct:    9 KRIRPEKGNPLPRYMTAHAAGVDLCADLDQELVLEPGERTLVPTGIAIELPEGYEAQIRPRSGLALKHGISLVNSPGTIDADYRGEIGVIVINHGNEPFVISNNERIAQMVFAPFTRAVFQDVAELGETARGEGGFGHTG 148          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_RICCN (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Rickettsia conorii GN=dut PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.839e-22
Identity = 64/143 (44.76%), Postives = 87/143 (60.84%), Query Frame = 3
Query:  129 LRVKKLSE-KAVLPKRGSPLAAGYDLSSAAETKVPARGKA--LVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVG--AGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            +++KKL      LP+  +  +AG DL +A E  +  +  A  L+PT ++IA+P+   A+I PRSGLA KH + V    G IDADYRG + VIL N    DF+++ G RIAQ+II K       E  +L  T+RG GGFGSTGV
Sbjct:    6 VKIKKLENFSGSLPEYATEHSAGMDLIAANEQPITIKAAAIQLIPTGIAIALPDSFEAQIRPRSGLAVKHGITVANSPGTIDADYRGEIKVILINLGKEDFIIEKGMRIAQMIIAKYERILWEESSSLMETMRGSGGFGSTGV 148          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_RICBR (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Rickettsia bellii (strain RML369-C) GN=dut PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.839e-22
Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 3
Query:  129 LRVKKLSEK-AVLPKRGSPLAAGYDLSSAAETKVPARGKA--LVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVG--AGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            ++VKKL      LP+  +  +AG DL++A E  +  +     L+PT ++IA+PE   A+I PRSGLA K+ + V    G IDADYRG + VIL N    DFV++ G RIAQ++I K       E E L+ T RG GGFGSTGV
Sbjct:    6 VKVKKLDNFFGKLPEYATDHSAGMDLTAANEQPITIKAGEIQLIPTGIAIALPELFEAQIRPRSGLAAKNGITVANSPGTIDADYRGEIKVILINLGKDDFVIEKGMRIAQMVISKYERISWKESETLEETARGSGGFGSTGV 148          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_RICB8 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Rickettsia bellii (strain OSU 85-389) GN=dut PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.839e-22
Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 3
Query:  129 LRVKKLSEK-AVLPKRGSPLAAGYDLSSAAETKVPARGKA--LVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVG--AGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            ++VKKL      LP+  +  +AG DL++A E  +  +     L+PT ++IA+PE   A+I PRSGLA K+ + V    G IDADYRG + VIL N    DFV++ G RIAQ++I K       E E L+ T RG GGFGSTGV
Sbjct:    6 VKVKKLDNFFGKLPEYATDHSAGMDLTAANEQPITIKAGEIQLIPTGIAIALPELFEAQIRPRSGLAAKNGITVANSPGTIDADYRGEIKVILINLGKDDFVIEKGMRIAQMVISKYERISWKESETLEETARGSGGFGSTGV 148          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_RICAE (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Rickettsia africae (strain ESF-5) GN=dut PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.839e-22
Identity = 64/143 (44.76%), Postives = 87/143 (60.84%), Query Frame = 3
Query:  129 LRVKKLSE-KAVLPKRGSPLAAGYDLSSAAETKVPARGKA--LVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVG--AGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            +++KKL      LP+  +  +AG DL +A E  +  +  A  L+PT ++IA+P+   A+I PRSGLA KH + V    G IDADYRG + VIL N    DF+++ G RIAQ+II K       E  +L  T+RG GGFGSTGV
Sbjct:    6 VKIKKLENFSGSLPEYATEHSAGMDLIAANEQPITIKAAAIQLIPTGIAIALPDSFEAQIRPRSGLAVKHGITVANSPGTIDADYRGEIKVILINLGKEDFIIEKGMRIAQMIIAKYERILWEESSSLMETMRGSGGFGSTGV 148          
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_HELAH (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Helicobacter acinonychis (strain Sheeba) GN=dut PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.839e-22
Identity = 54/140 (38.57%), Postives = 83/140 (59.29%), Query Frame = 3
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            ++++K+   A++PK  +  ++G+DL +     +      LV   + +++  G   ++  RSGLA  H + V    G +D DYRG + VIL N SD DF ++VGDRIAQ +++K    + +E E LD T RG GGFGSTGV
Sbjct:    3 IKIQKIHPNALIPKYQTEGSSGFDLHAVENAVIKPHSVGLVRIGICLSLEVGYELQVRTRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSDKDFTIQVGDRIAQGVVQKTYKAEFIECEQLDETSRGSGGFGSTGV 142          
The following BLAST results are available for this feature:
BLAST of DY258604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 440
Match NameE-valueIdentityDescription
DUT_CHLL22.621e-2242.25Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_RHOPT3.423e-2245.45Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_RHOPA3.423e-2245.45Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_PROA23.423e-2240.85Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_GEOSF4.470e-2242.14Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_RICCN5.839e-2244.76Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_RICBR5.839e-2245.45Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_RICB85.839e-2245.45Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_RICAE5.839e-2244.76Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_HELAH5.839e-2238.57Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CC08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258604 ID=DY258604; Name=DY258604; organism=Citrus clementina; type=EST; length=793bp
CACTAAAGCTTGTTTTCAAAATGGCCCCAGCAGTTCAGCAAAATGGCAGC
CCAGAAGTCAAAGAGCCTTCTCCAAAGATCCCAAAACTACACCAGAACGG
CGTCGAAAATGACAACATAGGCTCTCTCTTGAGAGTTAAAAAGCTCTCCG
AAAAGGCTGTTTTGCCCAAAAGAGGCTCCCCTCTTGCCGCTGGCTACGAT
CTCTCCAGTGCTGCGGAGACTAAGGTGCCAGCAAGGGGAAAAGCTCTTGT
TCCAACAGATCTGAGCATCGCAATACCCGAAGGAACATATGCACGTATTG
CGCCAAGATCGGGACTGGCGTGGAAGCACTCAATGGACGTGGGAGCCGGG
GTGATTGATGCGGATTACAGGGGCCCTGTTGGGGTGATTTTGTTTAATCA
TTCTGATGTTGATTTTGTGGTGAAAGTGGGTGATAGAATTGCTCAATTAA
TAATTGAGAAAATCGTGACTCCTGATGTGTTGGAGGTTGAGAACTTGGAC
TCTACTGTCAGAGGAGAAGGTGGTTTTGGCTCTACTGGGGTTTGAATTTC
TTTGTTGAAGACTATGCGTTGTTGCATATGTTTTGTTTTTATGGTAATGT
TAGTTCAGGTCTCTGGGTAGTTTTGTCGGGCAGCTGGTGTACAGGCTATT
GGCTTGTTTTGCTGTCTTGATTTGTAAACAACTTGGTAAGTAGTATTGGC
ATGGAAGAAATGGCATGTATCCTCTTGTTGTTTCTATCTATATAACAACA
TTTGGGTTTGTTTTGGCTGTAAATTTACTGATGCTAAGCTTAT
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