DY258604

Overview
NameDY258604
Unique NameDY258604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_RICRS (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Rickettsia rickettsii (strain Sheila Smith) GN=dut PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.301e-21
Identity = 64/143 (44.76%), Postives = 87/143 (60.84%), Query Frame = 3 
Query:  129 LRVKKLSE-KAVLPKRGSPLAAGYDLSSAAETKVPARGKA--LVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVG--AGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            +++KKL      LP+  +  +AG DL +A E  +  +  A  L+PT ++IA+P+   A+I PRSGLA KH + V    G IDADYRG + VIL N    DF+++ G RIAQ+II K       E  +L  T+RG GGFGSTGV
Sbjct:    6 VKIKKLENFSGSLPEYATEHSAGMDLIAANEQPITIKAAAIQLIPTGIAIALPDSFEAQIRPRSGLAVKHGITVANSPGTIDADYRGEIKVILINLGKEDFIIEKGMRIAQMIIAKYERILWEESISLMETMRGSGGFGSTGV 148
[Close]
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_RICRO (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Rickettsia rickettsii (strain Iowa) GN=dut PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.301e-21
Identity = 64/143 (44.76%), Postives = 87/143 (60.84%), Query Frame = 3 
Query:  129 LRVKKLSE-KAVLPKRGSPLAAGYDLSSAAETKVPARGKA--LVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVG--AGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            +++KKL      LP+  +  +AG DL +A E  +  +  A  L+PT ++IA+P+   A+I PRSGLA KH + V    G IDADYRG + VIL N    DF+++ G RIAQ+II K       E  +L  T+RG GGFGSTGV
Sbjct:    6 VKIKKLENFSGSLPEYATEHSAGMDLIAANEQPITIKAAAIQLIPTGIAIALPDSFEAQIRPRSGLAVKHGITVANSPGTIDADYRGEIKVILINLGKEDFIIEKGMRIAQMIIAKYERILWEESISLMETMRGSGGFGSTGV 148
[Close]
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_RICFE (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Rickettsia felis GN=dut PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.301e-21
Identity = 64/143 (44.76%), Postives = 86/143 (60.14%), Query Frame = 3 
Query:  129 LRVKKLSE-KAVLPKRGSPLAAGYDLSSAAETKVPARGKA--LVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVG--AGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            +++KKL      LP+  +  +AG DL +A E  +  +     L+PT ++IA+P+   A+I PRSGLA KH + V    G IDADYRG + VIL N    DFV++ G RIAQ+II K       E  +L  T+RG GGFGSTGV
Sbjct:    6 VKIKKLENFSGSLPEYATEHSAGMDLIAANEQPITIKAGEIQLIPTGIAIALPDSFEAQIRPRSGLAVKHGITVANSPGTIDADYRGEIKVILINLGKEDFVIEKGMRIAQMIIAKYERILWEESSSLTETMRGSGGFGSTGV 148
[Close]
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_CORGL (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Corynebacterium glutamicum GN=dut PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.301e-21
Identity = 57/140 (40.71%), Postives = 84/140 (60.00%), Query Frame = 3 
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            +++ +L ++  LPKR     AG DL +  +  +    + +V T ++IA+P GT   + PRSGLA +  + +    G IDADYRG + V L N   +   ++  GDRIAQL+I+K+   D  EVE LD TVRG+ G+GSTG
Sbjct:    7 IKIVRLDKELPLPKRAHRGDAGVDLHATTDAVIAPGHREIVGTGIAIALPLGTVGLVHPRSGLAAREGLSIVNAPGTIDADYRGEIKVCLINLDPEKPIMITRGDRIAQLVIQKVELVDFEEVEELDDTVRGDQGYGSTG 146
[Close]
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_CORGB (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Corynebacterium glutamicum (strain R) GN=dut PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.301e-21
Identity = 57/140 (40.71%), Postives = 84/140 (60.00%), Query Frame = 3 
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            +++ +L ++  LPKR     AG DL +  +  +    + +V T ++IA+P GT   + PRSGLA +  + +    G IDADYRG + V L N   +   ++  GDRIAQL+I+K+   D  EVE LD TVRG+ G+GSTG
Sbjct:    7 IKIVRLDKELPLPKRAHRGDAGVDLHATTDAVIAPGHREIVGTGIAIALPLGTVGLVHPRSGLAAREGLSIVNAPGTIDADYRGEIKVCLINLDPEKPIMITRGDRIAQLVIQKVELVDFEEVEELDDTVRGDQGYGSTG 146
[Close]
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_NITWN (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dut PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.699e-21
Identity = 58/137 (42.34%), Postives = 82/137 (59.85%), Query Frame = 3 
Query:  147 SEKAVLPKRGSPLAAGYDLSSAAETKVP----ARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            +E   LP   S  AAG DL +A   + P    A  +A+VPT L IA+P+G  A++ PRSGLA +H + V    G +DADYRG + V+L N     F ++ G+RIAQ+I+  +   +++    L +T RG GGFGSTG
Sbjct:   15 AEGLPLPSYQSTQAAGLDLIAAIGEQAPLVLAAGRRAMVPTGLVIALPDGYEAQVRPRSGLAARHGVTVLNSPGTVDADYRGEINVLLVNLGSEAFTIRRGERIAQMIVAPVTRVELVRAAALPATPRGSGGFGSTG 151
[Close]
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_RHOS4 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dut PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.219e-21
Identity = 61/125 (48.80%), Postives = 75/125 (60.00%), Query Frame = 3 
Query:  174 GSPLAAGYDLSSAAETKVPAR-GKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            G+ L A     S AE  V A  G+ LVPT L I IP+G   +I PRSGLA KH + +    G ID+DYRGP+GVIL N  D  F V  GDRIAQ+++  +V       + L +T RG GGFGSTG
Sbjct:   29 GADLRANLPPESRAEGLVLAPLGRVLVPTGLRIEIPDGFEVQIRPRSGLALKHGISLPNSPGTIDSDYRGPLGVILVNLGDEPFRVAHGDRIAQMVVAPVVQARFELADGLGATARGAGGFGSTG 153
[Close]
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_CHLCH (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Chlorobium chlorochromatii (strain CaD3) GN=dut PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.219e-21
Identity = 59/142 (41.55%), Postives = 84/142 (59.15%), Query Frame = 3 
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPAR--GKALVPTDLSIAIPEGTYARIAPRSGLAWKH--SMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            +++ +L   A LP   +  AAG D+++  E  V       AL+PT  ++ +P G  A++ PRSGLA +   S+      IDADYRG V VIL N+    F+V+ GDRIAQ++I ++      EV  L +TVRGEGGFG TG+
Sbjct:    4 IKIVRLHPLATLPAYATAHAAGMDVAACLEAPVSVAPFSTALIPTGFALELPIGYEAQLRPRSGLALRSMISLPNTPATIDADYRGEVKVILINYGKEPFMVQHGDRIAQMVIARVEQVQFEEVAELSATVRGEGGFGHTGI 145
[Close]
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_RICPR (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Rickettsia prowazekii GN=dut PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.898e-21
Identity = 62/143 (43.36%), Postives = 87/143 (60.84%), Query Frame = 3 
Query:  129 LRVKKLSE-KAVLPKRGSPLAAGYDLSSAAETKVPARGKA--LVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVG--AGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 542
            +++KKL      LP+  +  +AG DL +A E  +  +  +  L+PT ++IA+PE   A+I PRSGLA KH + V    G IDADYRG + V+L N  + DF+++ G RIAQ+II K       E   L  T+RG GGFGSTG+
Sbjct:    6 VKIKKLENFLGNLPEYATEHSAGMDLVAANEQSITIKVGSIQLIPTGIAIALPESFEAQIRPRSGLAVKHGITVANSPGTIDADYRGEIKVLLINLGNKDFIIEKGMRIAQMIIAKYERVLWAETSILTETMRGRGGFGSTGL 148
[Close]
BLAST of DY258604 vs. ExPASy Swiss-Prot
Match: DUT_RHOE4 (Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=dut PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.898e-21
Identity = 56/140 (40.00%), Postives = 83/140 (59.29%), Query Frame = 3 
Query:  129 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFNHSDVDFV-VKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTG 539
            + +K+L     +P+R  P  AG DL S ++  +    + LV T ++IA+P GT   I PRSGLA K  + +    G +DA YRG + V L N      + ++ GDRIAQL+++++  P   EVE+LD T RG GG+GS+G
Sbjct:    7 IALKRLDPDLPVPQRAHPGDAGVDLCSTSDVTIEPGHRTLVGTGIAIALPVGTVGLIHPRSGLAAKSGLSIVNAPGTVDAGYRGELKVCLINLDPATAIDIRRGDRIAQLVVQRVELPVFEEVESLDDTTRGTGGYGSSG 146
The following BLAST results are available for this feature:
BLAST of DY258604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 440
Match NameE-valueIdentityDescription
DUT_RICRS1.301e-2144.76Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_RICRO1.301e-2144.76Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_RICFE1.301e-2144.76Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_CORGL1.301e-2140.71Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_CORGB1.301e-2140.71Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_NITWN1.699e-2142.34Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_RHOS42.219e-2148.80Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_CHLCH2.219e-2141.55Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_RICPR2.898e-2143.36Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]
DUT_RHOE42.898e-2140.00Deoxyuridine 5'-triphosphate nucleotidohydrolase O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CC08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258604 ID=DY258604; Name=DY258604; organism=Citrus clementina; type=EST; length=793bp
CACTAAAGCTTGTTTTCAAAATGGCCCCAGCAGTTCAGCAAAATGGCAGC
CCAGAAGTCAAAGAGCCTTCTCCAAAGATCCCAAAACTACACCAGAACGG
CGTCGAAAATGACAACATAGGCTCTCTCTTGAGAGTTAAAAAGCTCTCCG
AAAAGGCTGTTTTGCCCAAAAGAGGCTCCCCTCTTGCCGCTGGCTACGAT
CTCTCCAGTGCTGCGGAGACTAAGGTGCCAGCAAGGGGAAAAGCTCTTGT
TCCAACAGATCTGAGCATCGCAATACCCGAAGGAACATATGCACGTATTG
CGCCAAGATCGGGACTGGCGTGGAAGCACTCAATGGACGTGGGAGCCGGG
GTGATTGATGCGGATTACAGGGGCCCTGTTGGGGTGATTTTGTTTAATCA
TTCTGATGTTGATTTTGTGGTGAAAGTGGGTGATAGAATTGCTCAATTAA
TAATTGAGAAAATCGTGACTCCTGATGTGTTGGAGGTTGAGAACTTGGAC
TCTACTGTCAGAGGAGAAGGTGGTTTTGGCTCTACTGGGGTTTGAATTTC
TTTGTTGAAGACTATGCGTTGTTGCATATGTTTTGTTTTTATGGTAATGT
TAGTTCAGGTCTCTGGGTAGTTTTGTCGGGCAGCTGGTGTACAGGCTATT
GGCTTGTTTTGCTGTCTTGATTTGTAAACAACTTGGTAAGTAGTATTGGC
ATGGAAGAAATGGCATGTATCCTCTTGTTGTTTCTATCTATATAACAACA
TTTGGGTTTGTTTTGGCTGTAAATTTACTGATGCTAAGCTTAT
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