DY258605

Overview
NameDY258605
Unique NameDY258605
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14558 contig Ccv1_Contig14558:379..1114. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258605 vs. ExPASy Swiss-Prot
Match: SPEE_SYNJB (Spermidine synthase OS=Synechococcus sp. GN=speE PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 44/141 (31.21%), Postives = 76/141 (53.90%), Query Frame = 1
Query:    1 ADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAG-IFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASDQPFS--INAEEIDNRIKSRINAE---LLYLNGASFLSSTTMNKAVYLSLLNETHVYT 405
            +DP+E GP Y+L+T+ F+ +I + KL  +G F  QAGP G +  H+   + I  T+K VF  V  Y  + P++    G+ +A+  P S     E+ID  +  +++ E   L +++G + L    +   +  ++  ET VYT
Sbjct:  167 SDPIESGPAYRLFTQEFFRQI-RSKLQPDGAFTIQAGPTGPVELHQH--TRIVRTLKTVFAAVQPYAIYAPTYGGPLGFALAAQDPISPRPEPEQIDQILSQQLDPERGALQFIDGITLLGLYQVPAHLRRAIAAETVVYT 304          
BLAST of DY258605 vs. ExPASy Swiss-Prot
Match: SPEE_THET8 (Spermidine synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=speE PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 48/150 (32.00%), Postives = 79/150 (52.67%), Query Frame = 1
Query:    4 DPV-EGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASD--QPFSINAEEIDNRIKSRINAELLYLNGASFLSSTTMNKAVYLSLLNETHVYTEEDARFIHGHGVA 444
            DPV E  P   LYT  FY R++K  LN  G+   QAG   + TH  V   ++ T+++ F++V +Y  H+P F   +G+++ASD   P + +   I+ RI+ R N  L +L      +   + K +  +L  ET V T+++  ++   G A
Sbjct:  161 DPVGEDNPARLLYTVEFY-RLVKAHLNPGGVMGMQAGMI-LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFSEGVIEARIRER-NLALRHLTAPYLEAMFVLPKDLLEALEKETMVSTDQNPFYVTPEGEA 307          
BLAST of DY258605 vs. ExPASy Swiss-Prot
Match: SPEE_THET2 (Spermidine synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=speE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 48/150 (32.00%), Postives = 79/150 (52.67%), Query Frame = 1
Query:    4 DPV-EGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASD--QPFSINAEEIDNRIKSRINAELLYLNGASFLSSTTMNKAVYLSLLNETHVYTEEDARFIHGHGVA 444
            DPV E  P   LYT  FY R++K  LN  G+   QAG   + TH  V   ++ T+++ F++V +Y  H+P F   +G+++ASD   P + +   I+ RI+ R N  L +L      +   + K +  +L  ET V T+++  ++   G A
Sbjct:  161 DPVGEDNPARLLYTVEFY-RLVKAHLNPGGVMGMQAGMI-LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFSEGVIEARIRER-NLALRHLTAPYLEAMFVLPKDLLEALEKETMVSTDQNPFYVTPEGEA 307          
BLAST of DY258605 vs. ExPASy Swiss-Prot
Match: SPEE_SYNJA (Spermidine synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=speE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 43/143 (30.07%), Postives = 76/143 (53.15%), Query Frame = 1
Query:    1 ADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAG---IFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASDQPFSI--NAEEIDNRIKSRINAE---LLYLNGASFLSSTTMNKAVYLSLLNETHVYT 405
            +DPVE GP Y+L+T+ F+ ++ + KL   G FV QAGP G   ++ H    + I +T+K VF  V  Y  + P++    G+ +A+  P S     E++D  +   ++ +   L +++G + L    +   +  ++  ET VYT
Sbjct:  167 SDPVEAGPAYRLFTQEFFRQV-RSKLQTAGAFVIQAGPTGPVELWQH----TRIVHTLKTVFAAVQPYAIYAPTYGGPLGFALAAQDPISSRPEPEQVDQILAQHLDPDRGALRFIDGITLLGLYQVPAHLRRAIAAETTVYT 304          
The following BLAST results are available for this feature:
BLAST of DY258605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SPEE_SYNJB6.359e-1231.21Spermidine synthase OS=Synechococcus sp. GN=speE P... [more]
SPEE_THET81.085e-1132.00Spermidine synthase OS=Thermus thermophilus (strai... [more]
SPEE_THET21.085e-1132.00Spermidine synthase OS=Thermus thermophilus (strai... [more]
SPEE_SYNJA1.850e-1130.07Spermidine synthase OS=Synechococcus sp. (strain J... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CC12FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258605 ID=DY258605; Name=DY258605; organism=Citrus clementina; type=EST; length=736bp
GCTGACCCAGTTGAAGGGGGACCTTGCTATCAACTCTACACTAAATCTTT
CTACGAACGAATTCTGAAGCCTAAGCTCAATGACAATGGCATCTTTGTTA
CCCAGGCTGGACCAGCAGGCATTTTCACCCACAAAGAGGTGTTCTCATCC
ATTTACAACACCATCAAGCAGGTCTTCAAGCATGTGGTGGCATACACTGC
TCATGTGCCATCTTTTGCAGATACCTGGGGATGGGTTATGGCGTCAGACC
AACCGTTCTCTATCAATGCTGAGGAAATCGACAACAGGATCAAGAGCAGG
ATTAATGCTGAATTACTCTATCTAAATGGCGCTTCATTCCTCTCCTCTAC
CACCATGAACAAGGCTGTTTATTTATCGCTGTTGAATGAGACTCATGTCT
ACACCGAGGAAGATGCAAGATTTATTCATGGACATGGTGTGGCCTATAAT
AACAGCCATTGAGGTCTTAATTAGCCTCTATATGGTTGGGGGAATTGCTG
TACAGAGAGAAGAAAAAAGCAAAACAATTTAGAGGGTTGGGATATGGAAT
GTTTAAGTTAAAAAACTTCTCTAGAGAAATCAATTTGTTGAAAAGCATTT
GGTTTTTAGACAATATTGTTGGTGTTGGCTCCATTGGATTGTTTATAGGA
GTCAATATGTTATATAGATAGTCATAATATGACAGCTTTTTTCAAGTTTT
ATTAATGAATCTTGAGGCATTCCTCCGTTTCAGTTT
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