DY258607

Overview
NameDY258607
Unique NameDY258607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 8.624e-34
Identity = 70/132 (53.03%), Postives = 101/132 (76.52%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKL--KKAREGTTAK 928
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ ++++ ++ +WL E+  +++ NV  +LVGNKS L  KK  + TTAK
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAK 137          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 8.624e-34
Identity = 70/132 (53.03%), Postives = 101/132 (76.52%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKL--KKAREGTTAK 928
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ ++++ ++ +WL E+  +++ NV  +LVGNKS L  KK  + TTAK
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAK 137          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 8.624e-34
Identity = 70/132 (53.03%), Postives = 101/132 (76.52%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKL--KKAREGTTAK 928
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ ++++ ++ +WL E+  +++ NV  +LVGNKS L  KK  + TTAK
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAK 137          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 8.624e-34
Identity = 70/132 (53.03%), Postives = 101/132 (76.52%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKL--KKAREGTTAK 928
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ ++++ ++ +WL E+  +++ NV  +LVGNKS L  KK  + TTAK
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAK 137          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.126e-33
Identity = 66/145 (45.52%), Postives = 103/145 (71.03%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            DYLFK++LIGDS VGK+ LL RF+ D F     STIG++F+ + ++++GK++K QIWDTAGQERFR +T+AYYRGA+G + VYDI+  ++F++I  W+  +  H++ +V  +++GNK  + + R+ +  +G  LA   G+ F  T
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLET 150          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.126e-33
Identity = 67/145 (46.21%), Postives = 101/145 (69.66%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            DYLFK++LIGDS VGK+  L RF+ D F     STIG++F+ + ++++GK +K QIWDTAGQERFR +T+AYYRGA+G +LVYDI+  ++FE+I  W+  +  H++ +V  +++GNK      R+ +  +G  LA + G+ F  T
Sbjct:    6 DYLFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMET 150          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.126e-33
Identity = 66/142 (46.48%), Postives = 100/142 (70.42%), Query Frame = 2
Query:  521 EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAK 946
            + D   D+LFK+VL+GD++VGK+ ++ RF    F     STIGV+F  + ++I GK VK QIWDTAGQERFR +T +YYR A GA+L YDI++R +F S+  W+ ++  ++  N+V +L+GNKS L + RE + A+ ++LA+
Sbjct:   10 DPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAE 151          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.921e-33
Identity = 72/145 (49.66%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            D+LFK ++IG +  GKS LL +F  ++F  +S  TIGVEF ++ +++ GK VK QIWDTAGQERFR+VT +YYRGA GALLVYDI+ R+T+ S+  WL +  T ++ N+V IL GNK  L   RE T  +    A+   L F  T
Sbjct:    6 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLET 150          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.921e-33
Identity = 72/145 (49.66%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            D+LFK ++IG +  GKS LL +F  ++F  +S  TIGVEF ++ +++ GK VK QIWDTAGQERFR+VT +YYRGA GALLVYDI+ R+T+ S+  WL +  T ++ N+V IL GNK  L   RE T  +    A+   L F  T
Sbjct:    6 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLET 150          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.921e-33
Identity = 72/145 (49.66%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            D+LFK ++IG +  GKS LL +F  ++F  +S  TIGVEF ++ +++ GK VK QIWDTAGQERFR+VT +YYRGA GALLVYDI+ R+T+ S+  WL +  T ++ N+V IL GNK  L   RE T  +    A+   L F  T
Sbjct:    6 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLET 150          
The following BLAST results are available for this feature:
BLAST of DY258607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_PONAB8.624e-3453.03Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_MOUSE8.624e-3453.03Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1B_HUMAN8.624e-3453.03Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN8.624e-3453.03Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RAB8_DISOM1.126e-3345.52Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB8A_CHICK1.126e-3346.21Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB43_HUMAN1.126e-3346.48Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RAB4B_RAT1.921e-3349.66Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]
RAB4B_MOUSE1.921e-3349.66Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]
RAB4B_HUMAN1.921e-3349.66Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258607 ID=DY258607; Name=DY258607; organism=Citrus clementina; type=EST; length=1124bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGACATTAGTAGAC
GACAGACATTTGAAAGCATTGGCAGATGGCTTAATGAACTTCACACTCAC
TCAAATATGAATGTAGTAACCATACTTGTGGGCAACAAGTCAAAACTCAA
AAAAGCGAGGGAAGGAACTACTGCCAAAGGCAGGGCCTTGGCCAAAGCCC
AGGGTTTATTTTTCCAGGGAACTTTCCCTTCTTGATTTCCCCAAATGGAA
CTGGTGCCTTTCAAAAGGTCCTTCCCCAAAATTTAAAAATAAACTAGCCC
GAAAAGTTTTAAAATCTCTAAAACTTAAACCCAAAAGATTCTCCCCCTTT
TCCCCGGGGAAAAAAAATATTTTT
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