DY258607

Overview
NameDY258607
Unique NameDY258607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB4B_CANFA (Ras-related protein Rab-4B OS=Canis familiaris GN=RAB4B PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.921e-33
Identity = 72/145 (49.66%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            D+LFK ++IG +  GKS LL +F  ++F  +S  TIGVEF ++ +++ GK VK QIWDTAGQERFR+VT +YYRGA GALLVYDI+ R+T+ S+  WL +  T ++ N+V IL GNK  L   RE T  +    A+   L F  T
Sbjct:    6 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLET 150          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.921e-33
Identity = 70/144 (48.61%), Postives = 95/144 (65.97%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            +LFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+ K +K QIWDTAGQE FR++T +YYRG+ GALLVYDI+RR TF  +  WL +  +++N N+  IL+GNKS ++  R  +  +GR  A   GL F  T
Sbjct:    4 FLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLET 147          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.509e-33
Identity = 67/147 (45.58%), Postives = 104/147 (70.75%), Query Frame = 2
Query:  533 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            A D+L K++LIGDS VGKS LL RF+   F P+  +TIG++F+ + +++ GK +K QIWDTAGQERFR +T+AYYRGA+G LLVYD++  ++F SI  W+  +  H++ +V  +L+GNK  + + +   +++G++LA   G+ F  T
Sbjct:   11 AYDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLET 157          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.509e-33
Identity = 70/132 (53.03%), Postives = 100/132 (75.76%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKL--KKAREGTTAK 928
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ +++F ++ +WL E+  +++ NV  +LVGNK  L  KK  + TTAK
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 137          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 2.509e-33
Identity = 70/132 (53.03%), Postives = 100/132 (75.76%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKL--KKAREGTTAK 928
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ +++F ++ +WL E+  +++ NV  +LVGNK  L  KK  + TTAK
Sbjct:    9 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 140          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 2.509e-33
Identity = 70/132 (53.03%), Postives = 100/132 (75.76%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKL--KKAREGTTAK 928
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ +++F ++ +WL E+  +++ NV  +LVGNK  L  KK  + TTAK
Sbjct:    9 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 140          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 2.509e-33
Identity = 70/132 (53.03%), Postives = 100/132 (75.76%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKL--KKAREGTTAK 928
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ +++F ++ +WL E+  +++ NV  +LVGNK  L  KK  + TTAK
Sbjct:    9 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 140          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 2.509e-33
Identity = 70/132 (53.03%), Postives = 100/132 (75.76%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKL--KKAREGTTAK 928
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ +++F ++ +WL E+  +++ NV  +LVGNK  L  KK  + TTAK
Sbjct:    9 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK 140          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 3.277e-33
Identity = 73/134 (54.48%), Postives = 98/134 (73.13%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKL--KKAREGTTAKGRA 937
            YLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + +++NGK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ + TFE++ +WL E+   +  NV  +LVGNKS L  KK  +  TAK  A
Sbjct:    7 YLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFA 140          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 3.277e-33
Identity = 66/145 (45.52%), Postives = 102/145 (70.34%), Query Frame = 2
Query:  530 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            +A D+LFK++LIGDS VGK+ L+ RFA D F     STIG++F+ + +DI GK++K Q+WDTAGQERF+ +T+AYYRGA+G +LVYDI+  ++FE+I  W+  +  +++  V  +L+GNK  ++  R+    +   LA+  G+ F
Sbjct:    3 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRF 147          
The following BLAST results are available for this feature:
BLAST of DY258607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB4B_CANFA1.921e-3349.66Ras-related protein Rab-4B OS=Canis familiaris GN=... [more]
RAB2A_DICDI1.921e-3348.61Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB8B_DICDI2.509e-3345.58Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB1_DISOM2.509e-3353.03Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB1A_RAT2.509e-3353.03Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE2.509e-3353.03Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN2.509e-3353.03Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA2.509e-3353.03Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
RAB1A_DICDI3.277e-3354.48Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAB13_HUMAN3.277e-3345.52Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258607 ID=DY258607; Name=DY258607; organism=Citrus clementina; type=EST; length=1124bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGACATTAGTAGAC
GACAGACATTTGAAAGCATTGGCAGATGGCTTAATGAACTTCACACTCAC
TCAAATATGAATGTAGTAACCATACTTGTGGGCAACAAGTCAAAACTCAA
AAAAGCGAGGGAAGGAACTACTGCCAAAGGCAGGGCCTTGGCCAAAGCCC
AGGGTTTATTTTTCCAGGGAACTTTCCCTTCTTGATTTCCCCAAATGGAA
CTGGTGCCTTTCAAAAGGTCCTTCCCCAAAATTTAAAAATAAACTAGCCC
GAAAAGTTTTAAAATCTCTAAAACTTAAACCCAAAAGATTCTCCCCCTTT
TCCCCGGGGAAAAAAAATATTTTT
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