DY258607

Overview
NameDY258607
Unique NameDY258607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 3.277e-33
Identity = 66/145 (45.52%), Postives = 102/145 (70.34%), Query Frame = 2
Query:  530 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            +A D+LFK++LIGDS VGK+ L+ RFA D F     STIG++F+ + +DI GK++K Q+WDTAGQERF+ +T+AYYRGA+G +LVYDI+  ++FE+I  W+  +  +++  V  +L+GNK  ++  R+    +   LA+  G+ F
Sbjct:    3 KAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRF 147          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 3.277e-33
Identity = 66/142 (46.48%), Postives = 100/142 (70.42%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            D LFK++LIGDS VGK+ +L RF+ D F     STIG++ + + +++ GK++K QIWDTAGQERF  +T++YYRGA+G +LVYDI+  ++FE+I +WL  +  H+N +V  +L+GNK  ++  R    AKG  +A+  G+ F
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRF 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 4.280e-33
Identity = 70/145 (48.28%), Postives = 102/145 (70.34%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            DYLFK++LIGDS VGKS LL RF+ D +  +  STIGV+F+ + ++ +GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++  ++F ++ +WL+E+  +++ NV  +LVGNKS L + R       +A A   G+ F  T
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMET 150          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 4.280e-33
Identity = 71/132 (53.79%), Postives = 99/132 (75.00%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKL--KKAREGTTAK 928
            D LFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ Q ++++GK +K QIWDTAGQERF  +TS+YYRGA G L+VYD++ ++++ ++ +WL E+  H++ NV  +LVGNKS L  KK  + TTAK
Sbjct:    6 DCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAK 137          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.280e-33
Identity = 66/142 (46.48%), Postives = 99/142 (69.72%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            D LFK++LIGDS VGK+ +L RF+ D F     STIG++F+ + +++ GK++K QIWDTAGQERF  +T++YYRGA+G +LVYDI+  ++FE+I +WL  +  H+N +V  +L+GNK  +   R     KG  +A+  G+ F
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRF 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.280e-33
Identity = 66/142 (46.48%), Postives = 99/142 (69.72%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            D LFK++LIGDS VGK+ +L RF+ D F     STIG++F+ + +++ GK++K QIWDTAGQERF  +T++YYRGA+G +LVYDI+  ++FE+I +WL  +  H+N +V  +L+GNK  +   R     KG  +A+  G+ F
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRF 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.280e-33
Identity = 66/142 (46.48%), Postives = 99/142 (69.72%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            D LFK++LIGDS VGK+ +L RF+ D F     STIG++F+ + +++ GK++K QIWDTAGQERF  +T++YYRGA+G +LVYDI+  ++FE+I +WL  +  H+N +V  +L+GNK  +   R     KG  +A+  G+ F
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRF 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.280e-33
Identity = 66/142 (46.48%), Postives = 99/142 (69.72%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            D LFK++LIGDS VGK+ +L RF+ D F     STIG++F+ + +++ GK++K QIWDTAGQERF  +T++YYRGA+G +LVYDI+  ++FE+I +WL  +  H+N +V  +L+GNK  +   R     KG  +A+  G+ F
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRF 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.590e-33
Identity = 74/146 (50.68%), Postives = 100/146 (68.49%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKL-KKAREGTTAKGRALAKAQGLFFQGT 973
            D L K++L+GDS VGKS LL RF  D F  +  +TIG++F+ +K+D++GK VK QIWDTAGQERFR +TSAYYRGA G +LVYDI+   +F ++  W+  +  H++ NV  ILVGNK  L +  R  + A+G+ALA   G  F  T
Sbjct:   11 DALIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYET 156          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.590e-33
Identity = 65/142 (45.77%), Postives = 101/142 (71.13%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            D LFK++LIGDS VGK+ +L RF+ D F     STIG++F+ + ++++GK++K QIWDTAGQERF  +T++YYRGA+G +LVYDI+  ++FE+I +WL  +  H+N +V  +L+GNK  ++  R    +KG  +A+   + F
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRF 148          
The following BLAST results are available for this feature:
BLAST of DY258607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB13_BOVIN3.277e-3345.52Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB10_CHICK3.277e-3346.48Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RBD2A_ARATH4.280e-3348.28Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB1C_HUMAN4.280e-3353.79Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB10_PONAB4.280e-3346.48Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE4.280e-3346.48Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN4.280e-3346.48Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB10_CANFA4.280e-3346.48Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
YPTV2_VOLCA5.590e-3350.68GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RAB10_DISOM5.590e-3345.77Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258607 ID=DY258607; Name=DY258607; organism=Citrus clementina; type=EST; length=1124bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGACATTAGTAGAC
GACAGACATTTGAAAGCATTGGCAGATGGCTTAATGAACTTCACACTCAC
TCAAATATGAATGTAGTAACCATACTTGTGGGCAACAAGTCAAAACTCAA
AAAAGCGAGGGAAGGAACTACTGCCAAAGGCAGGGCCTTGGCCAAAGCCC
AGGGTTTATTTTTCCAGGGAACTTTCCCTTCTTGATTTCCCCAAATGGAA
CTGGTGCCTTTCAAAAGGTCCTTCCCCAAAATTTAAAAATAAACTAGCCC
GAAAAGTTTTAAAATCTCTAAAACTTAAACCCAAAAGATTCTCCCCCTTT
TCCCCGGGGAAAAAAAATATTTTT
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