DY258607

Overview
NameDY258607
Unique NameDY258607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 5.208e-47
Identity = 93/146 (63.70%), Postives = 114/146 (78.08%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  T+E++ RWL EL  H++ N+V +LVGNKS L+  R   T + RA A+  GL F
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSF 150          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 6.801e-47
Identity = 92/142 (64.79%), Postives = 113/142 (79.58%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  TFE++ RWL EL  H++ N+V +LVGNKS LK  R+  T   +A  + +GL F
Sbjct:   10 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSF 151          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 188.348 bits (477), Expect = 6.801e-47
Identity = 91/149 (61.07%), Postives = 115/149 (77.18%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            D+  DYLFK+VLIGDS VGKSN+L+RF R+EF   SKSTIGVEF T+   + GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++RQTF+++ RWL EL  H++ N+V ++ GNKS L   R      G++LA+ +GL F  T
Sbjct:    6 DQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLET 154          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 1.160e-46
Identity = 95/169 (56.21%), Postives = 125/169 (73.96%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGTFPS*FPQMELVPFKRSFPKI 1033
            D    YLFK+VLIGDS VGKSN+L+RF R+ F  +SKSTIGVEF T+ + + GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++RQ+F+++ RWL EL  H++ ++V ++VGNKS L   R  +  +G+ALA+ +GLFF  T       ME V  + +F  I
Sbjct:    6 DHEYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLET-----SAMEAVNVEEAFQTI 169          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.515e-46
Identity = 92/156 (58.97%), Postives = 121/156 (77.56%), Query Frame = 2
Query:  506 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            MA Y  +D   DYLFK+VLIGDS VGKSNLL+RF ++EF   SKSTIGVEF T+ ++I+ K +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYD++R  T+E++ RWL EL  H++ N+V +L+GNKS L+     +T + + LA+ +GL+F  T
Sbjct:    1 MAGYRADDEY-DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMET 155          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 186.422 bits (472), Expect = 2.585e-46
Identity = 92/146 (63.01%), Postives = 113/146 (77.40%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  T+E++ RWL EL  H++ N+V +LVGNKS L+  R   T + RA A+   L F
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSF 150          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 2.585e-46
Identity = 92/146 (63.01%), Postives = 113/146 (77.40%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  T+E++ RWL EL  H++ N+V +LVGNKS L+  R   T + RA A+   L F
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSF 150          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 186.422 bits (472), Expect = 2.585e-46
Identity = 92/146 (63.01%), Postives = 113/146 (77.40%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  T+E++ RWL EL  H++ N+V +LVGNKS L+  R   T + RA A+   L F
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSF 150          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 2.585e-46
Identity = 92/146 (63.01%), Postives = 113/146 (77.40%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  T+E++ RWL EL  H++ N+V +LVGNKS L+  R   T + RA A+   L F
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSF 150          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 3.376e-46
Identity = 92/146 (63.01%), Postives = 113/146 (77.40%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYDI++  T+E++ RWL EL  H++ N+V +LVGNKS L+  R   T + RA A+   L F
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSF 150          
The following BLAST results are available for this feature:
BLAST of DY258607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_BOVIN5.208e-4763.70Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
YPTC6_CHLRE6.801e-4764.79Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RAA2C_ARATH6.801e-4761.07Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RGP2_ORYSJ1.160e-4656.21Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
YPT3_NICPL1.515e-4658.97Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB11B_RAT2.585e-4663.01Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE2.585e-4663.01Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN2.585e-4663.01Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_BOVIN2.585e-4663.01Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RB11B_DISOM3.376e-4663.01Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258607 ID=DY258607; Name=DY258607; organism=Citrus clementina; type=EST; length=1124bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGACATTAGTAGAC
GACAGACATTTGAAAGCATTGGCAGATGGCTTAATGAACTTCACACTCAC
TCAAATATGAATGTAGTAACCATACTTGTGGGCAACAAGTCAAAACTCAA
AAAAGCGAGGGAAGGAACTACTGCCAAAGGCAGGGCCTTGGCCAAAGCCC
AGGGTTTATTTTTCCAGGGAACTTTCCCTTCTTGATTTCCCCAAATGGAA
CTGGTGCCTTTCAAAAGGTCCTTCCCCAAAATTTAAAAATAAACTAGCCC
GAAAAGTTTTAAAATCTCTAAAACTTAAACCCAAAAGATTCTCCCCCTTT
TCCCCGGGGAAAAAAAATATTTTT
back to top