DY258607

Overview
NameDY258607
Unique NameDY258607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 4.409e-46
Identity = 90/149 (60.40%), Postives = 115/149 (77.18%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            D   DYLFK+VLIGDS VGKSNLL+RF ++EF   SKSTIGVEF T+ ++++ K VKAQIWDTAGQER+RA+TSAYYRGAVGALLVYD++RR TFE+  RWL EL  H++ N+V +L+GNKS L+      T  G++ A+ + L+F  T
Sbjct:    7 DDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMET 155          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 4.409e-46
Identity = 89/146 (60.96%), Postives = 113/146 (77.40%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + + G+ VKAQIWDTAGQER+RA+TSAYYRGA+GALLVYD+++  TFE++ RWL EL  H++ N+V +L+GNK+ LK  R   T   ++ A+ +GL F
Sbjct:    6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSF 151          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.283e-45
Identity = 90/145 (62.07%), Postives = 114/145 (78.62%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            DYLFK+VLIGDS VGKSNLL+RF+R+EF   SKSTIGVEF T+ + ++ K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI+R  TFE++ RWL EL  H++ N+V +LVGNK+ L+  R  +T   +A A+ +  FF  T
Sbjct:   12 DYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMET 156          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 2.188e-45
Identity = 91/156 (58.33%), Postives = 117/156 (75.00%), Query Frame = 2
Query:  506 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            MA Y  +D   DYLFKVVLIGDS VGKSNLL+RF ++EF   SKSTIGVEF T+ ++++ K +KAQIWDTAGQER+RA+TSAYYRGAVGALLVYD++R  TFE++  WL EL  H++ N+V +LVGNKS L+      T   ++ A+ + L+F  T
Sbjct:    1 MAGYRADDEY-DYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMET 155          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 8.314e-45
Identity = 88/149 (59.06%), Postives = 111/149 (74.50%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            D   DYLFK+VLIGDS VGKSNLL+RF ++EF   SKSTIGVEF T+   + GK VKAQIWDTAGQER+RA+TSAYYRGAVGALL+YD++R  TFE+  RWL EL  H++ N+V +L+GNK  L+      T + +A A+ + L+F  T
Sbjct:    7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMET 155          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 5.389e-44
Identity = 86/142 (60.56%), Postives = 111/142 (78.17%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            DYLFK VLIGDS VGKSNLL RF R+EF   SKSTIGVEF T+ + ++ K++KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDI+++ +F+++GRWL EL  H++ N+V +LVGNK+ L   R  +T + +A A    L F
Sbjct:    8 DYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSF 149          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 1.734e-42
Identity = 88/154 (57.14%), Postives = 113/154 (73.38%), Query Frame = 2
Query:  518 SEEDRAEDY--LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            S ED   DY  LFK+VLIGDS VGKSNLL+RF ++EF  +SKSTIGVEF T+ ++I+GK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIS+  ++E+   WL+EL  +++ NV   L+GNKS L   R   T + +  A+   L F  T
Sbjct:    2 SSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTET 155          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 5.044e-42
Identity = 82/142 (57.75%), Postives = 111/142 (78.17%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            DYL+K+VLIGDS VGKSNLL+RF R+EF   +KSTIGVEF T+ +   GK +KAQ+WDTAGQER+RA+TSAYYRGAVGALLVYDI+++ T++S+ RW+ EL  +++ N+  +LVGNKS L+  RE +T + +  ++   L F
Sbjct:   11 DYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTF 152          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.124e-41
Identity = 99/203 (48.77%), Postives = 132/203 (65.02%), Query Frame = 2
Query:  530 RAEDY--LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGTFPS*FPQMEL---VPFKRSFPKI*K--*TSPKSFKISKT*TQKILPLFPGEKK 1117
            + EDY  +FKVVLIG+S VGK+NLL+RF R+EF  +S++TIGVEF T+ + +    VKAQIWDTAG ER+RA+TSAYYRGAVGALLV+D+++ QT+  + RWL EL+ H+   +V +LVGNKS L +ARE  T + R  A+  GL F  T       +EL      K  F K+ K    SP+S  I+    Q      PG+K+
Sbjct:    5 KEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQIQNSPRSNAIALGSAQAGQEPGPGQKR 207          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 3.269e-41
Identity = 85/152 (55.92%), Postives = 114/152 (75.00%), Query Frame = 2
Query:  518 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            +EED   +++FKVVLIG+S VGK+NLL+RF R+EF  +S++TIGVEF T+ + +    VKAQIWDTAG ER+RA+TSAYYRGAVGALLV+D+++ QT+  + RWL EL+ H+   +V +LVGNKS L +ARE  T + R  A+  GL F  T
Sbjct:    5 TEEDY--NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLET 154          
The following BLAST results are available for this feature:
BLAST of DY258607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11D_LOTJA4.409e-4660.40Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA2A_ARATH4.409e-4660.96Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB11B_TOBAC1.283e-4562.07Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAA1C_ARATH2.188e-4558.33Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RAA1A_ARATH8.314e-4559.06Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
YPT3_SCHPO5.389e-4460.56GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
YPT31_YEAST1.734e-4257.14GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RB11A_DICDI5.044e-4257.75Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RAB25_RABIT1.124e-4148.77Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RAB25_HUMAN3.269e-4155.92Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258607 ID=DY258607; Name=DY258607; organism=Citrus clementina; type=EST; length=1124bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGACATTAGTAGAC
GACAGACATTTGAAAGCATTGGCAGATGGCTTAATGAACTTCACACTCAC
TCAAATATGAATGTAGTAACCATACTTGTGGGCAACAAGTCAAAACTCAA
AAAAGCGAGGGAAGGAACTACTGCCAAAGGCAGGGCCTTGGCCAAAGCCC
AGGGTTTATTTTTCCAGGGAACTTTCCCTTCTTGATTTCCCCAAATGGAA
CTGGTGCCTTTCAAAAGGTCCTTCCCCAAAATTTAAAAATAAACTAGCCC
GAAAAGTTTTAAAATCTCTAAAACTTAAACCCAAAAGATTCTCCCCCTTT
TCCCCGGGGAAAAAAAATATTTTT
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