DY258607

Overview
NameDY258607
Unique NameDY258607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 7.284e-41
Identity = 83/145 (57.24%), Postives = 105/145 (72.41%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            DYLFK+VLIGDS VGKSNLL+RF  DEF   SKSTIGVEF T+ +++  K++KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIS+  ++E+   WL EL  +++ NV   L+GNKS L   R   T + +  A    + F  T
Sbjct:   11 DYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTET 155          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 7.284e-41
Identity = 82/151 (54.30%), Postives = 116/151 (76.82%), Query Frame = 2
Query:  521 EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            +E+ AE YLFK+V+IGDSAVGKSNLL RF R+EF   +K+TIGV+F T+ ++I+ K + AQ WDTAGQERFRAVTS YYRGAVGA++VYDI+ + +F+++ RWLNEL   +  +++ ++VGNKS L+ +RE  T + +A A++  + F  T
Sbjct:    3 QEEEAE-YLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLET 152          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 9.513e-41
Identity = 83/152 (54.61%), Postives = 114/152 (75.00%), Query Frame = 2
Query:  527 DRAED---YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            +RAE+   ++FKVVLIG+S VGK+NLL+RF R+EF  +S++TIGVEF T+ + +    +KAQIWDTAG ER+RA+TSAYYRGAVGALLV+D+++ QT+  + RWL EL+ H+   +V +LVGNKS L ++RE  T + R  A+  GL F  T
Sbjct:    3 NRAEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLET 154          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 2.768e-40
Identity = 82/149 (55.03%), Postives = 110/149 (73.83%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            D   +++FKVVLIG+S VGK+NLL+RF R+EF  +S++TIGVEF T+ + +    VKAQIWDTAG ER+RA+TSAYYRGAVGALLV+D+++ QT+  + RWL EL+ H+   +V +LVGNKS L +ARE  T +    A+  GL F  T
Sbjct:    6 DEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLET 154          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.374e-39
Identity = 76/154 (49.35%), Postives = 111/154 (72.08%), Query Frame = 2
Query:  503 KMAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            K  F   +  + ++LFK +++GDSAVGKSNLL +F    F PNS  TIGVEF ++ ++IN K++K QIWDTAGQE+FR++T AYYRGAV A++VYDI+RR +FES+  WL +    S+ +V T+L+GNK+ L+  R+ +T++ +  A+  GL F
Sbjct:   10 KPTFNDRKSTSYEHLFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMF 163          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 7.537e-38
Identity = 77/144 (53.47%), Postives = 98/144 (68.06%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR TF  +  WL +   HSN N+V +L+GNKS L+  RE    +G A A+  GL F  T
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMET 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 7.537e-38
Identity = 77/144 (53.47%), Postives = 98/144 (68.06%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR TF  +  WL +   HSN N+V +L+GNKS L+  RE    +G A A+  GL F  T
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMET 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 7.537e-38
Identity = 77/144 (53.47%), Postives = 98/144 (68.06%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR TF  +  WL +   HSN N+V +L+GNKS L+  RE    +G A A+  GL F  T
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMET 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 7.537e-38
Identity = 77/144 (53.47%), Postives = 98/144 (68.06%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR TF  +  WL +   HSN N+V +L+GNKS L+  RE    +G A A+  GL F  T
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMET 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 7.537e-38
Identity = 77/144 (53.47%), Postives = 98/144 (68.06%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR TF  +  WL +   HSN N+V +L+GNKS L+  RE    +G A A+  GL F  T
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMET 148          
The following BLAST results are available for this feature:
BLAST of DY258607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT32_YEAST7.284e-4157.24GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RB11C_DICDI7.284e-4154.30Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB25_BOVIN9.513e-4154.61Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
RAB25_MOUSE2.768e-4055.03Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RAB2B_DICDI1.374e-3949.35Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB2A_RABIT7.537e-3853.47Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB7.537e-3853.47Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE7.537e-3853.47Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA7.537e-3853.47Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN7.537e-3853.47Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258607 ID=DY258607; Name=DY258607; organism=Citrus clementina; type=EST; length=1124bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGACATTAGTAGAC
GACAGACATTTGAAAGCATTGGCAGATGGCTTAATGAACTTCACACTCAC
TCAAATATGAATGTAGTAACCATACTTGTGGGCAACAAGTCAAAACTCAA
AAAAGCGAGGGAAGGAACTACTGCCAAAGGCAGGGCCTTGGCCAAAGCCC
AGGGTTTATTTTTCCAGGGAACTTTCCCTTCTTGATTTCCCCAAATGGAA
CTGGTGCCTTTCAAAAGGTCCTTCCCCAAAATTTAAAAATAAACTAGCCC
GAAAAGTTTTAAAATCTCTAAAACTTAAACCCAAAAGATTCTCCCCCTTT
TCCCCGGGGAAAAAAAATATTTTT
back to top