DY258607

Overview
NameDY258607
Unique NameDY258607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RABV_DICDI (Ras-related protein RabV OS=Dictyostelium discoideum GN=rabV PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.529e-14
Identity = 42/124 (33.87%), Postives = 68/124 (54.84%), Query Frame = 2
Query:  545 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTI-LVGNKSKLKKARE 913
            + K++++G+  VGKS+LL R  +DEF      TIG++F  + M+I G++ K QIWD    +                LL++D++ + +F+SI  WL +L   +  N + I LVG KS L   R+
Sbjct:    8 IIKIMILGEKEVGKSSLLIRATKDEFNSQYIPTIGIDFDYKIMEIKGEKYKLQIWDYVSHDHINVFNKQVLSNTKIILLLFDLTNKSSFDSINNWLLKLDQSNKDNSIQIFLVGTKSDLISNRQ 131          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAN_PLAFA (GTP-binding nuclear protein Ran OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.997e-14
Identity = 40/125 (32.00%), Postives = 71/125 (56.80%), Query Frame = 2
Query:  533 AEDYL--FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLK 901
            +++Y+  +K++L+GD  VGK+  + R    EF      T+GVE    K   N  + +  +WDTAGQE+F  +   YY  +  A++++D+S R T++++  W  ++ T     +  +LVGNK  +K
Sbjct:    3 SQEYIPQYKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFQTNFGKTQFNVWDTAGQEKFGGLRDGYYIKSDCAIIMFDVSSRITYKNVPNWYRDI-TRVCETIPMVLVGNKVDVK 126          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: YPT10_YEAST (GTP-binding protein YPT10 OS=Saccharomyces cerevisiae GN=YPT10 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.609e-14
Identity = 43/122 (35.25%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  551 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDING------KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKL 898
            KVVL+GDS+VGK++++ R    +F     +TIG  F T+ +++        K +  +IWDTAGQER++++   YYR A  AL+V+++    + +    W  +L   +    V I+VGNK  L
Sbjct:    6 KVVLLGDSSVGKTSIVTRLKSGKFLAKHAATIGAAFITKTIEVPSNDSSTEKRIHMEIWDTAGQERYKSLVPMYYRDANIALIVFELGDVSSLQCAKTWFQDLQDRAQGTQV-IIVGNKYDL 126          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAN_XENTR (GTP-binding nuclear protein Ran OS=Xenopus tropicalis GN=ran PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.609e-14
Identity = 40/118 (33.90%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLK 901
            FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAGQE+F  +   YY  A  A++++D++ R T++++  W  +L      N+  +L GNK  +K
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIK 127          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAN_XENLA (GTP-binding nuclear protein Ran OS=Xenopus laevis GN=ran PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.609e-14
Identity = 40/118 (33.90%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLK 901
            FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAGQE+F  +   YY  A  A++++D++ R T++++  W  +L      N+  +L GNK  +K
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIK 127          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAN_SALSA (GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.609e-14
Identity = 40/118 (33.90%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLK 901
            FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAGQE+F  +   YY  A  A++++D++ R T++++  W  +L      N+  +L GNK  +K
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIK 126          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAN_RAT (GTP-binding nuclear protein Ran OS=Rattus norvegicus GN=Ran PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 2.609e-14
Identity = 40/118 (33.90%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLK 901
            FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAGQE+F  +   YY  A  A++++D++ R T++++  W  +L      N+  +L GNK  +K
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIK 127          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAN_PONAB (GTP-binding nuclear protein Ran OS=Pongo abelii GN=RAN PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 2.609e-14
Identity = 40/118 (33.90%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLK 901
            FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAGQE+F  +   YY  A  A++++D++ R T++++  W  +L      N+  +L GNK  +K
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIK 127          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAN_MOUSE (GTP-binding nuclear protein Ran OS=Mus musculus GN=Ran PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 2.609e-14
Identity = 40/118 (33.90%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLK 901
            FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAGQE+F  +   YY  A  A++++D++ R T++++  W  +L      N+  +L GNK  +K
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIK 127          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAN_MACFA (GTP-binding nuclear protein Ran OS=Macaca fascicularis GN=RAN PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 2.609e-14
Identity = 40/118 (33.90%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLK 901
            FK+VL+GD   GK+  + R    EF     +T+GVE        N   +K  +WDTAGQE+F  +   YY  A  A++++D++ R T++++  W  +L      N+  +L GNK  +K
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIK 127          
The following BLAST results are available for this feature:
BLAST of DY258607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABV_DICDI1.529e-1433.87Ras-related protein RabV OS=Dictyostelium discoide... [more]
RAN_PLAFA1.997e-1432.00GTP-binding nuclear protein Ran OS=Plasmodium falc... [more]
YPT10_YEAST2.609e-1435.25GTP-binding protein YPT10 OS=Saccharomyces cerevis... [more]
RAN_XENTR2.609e-1433.90GTP-binding nuclear protein Ran OS=Xenopus tropica... [more]
RAN_XENLA2.609e-1433.90GTP-binding nuclear protein Ran OS=Xenopus laevis ... [more]
RAN_SALSA2.609e-1433.90GTP-binding nuclear protein Ran OS=Salmo salar GN=... [more]
RAN_RAT2.609e-1433.90GTP-binding nuclear protein Ran OS=Rattus norvegic... [more]
RAN_PONAB2.609e-1433.90GTP-binding nuclear protein Ran OS=Pongo abelii GN... [more]
RAN_MOUSE2.609e-1433.90GTP-binding nuclear protein Ran OS=Mus musculus GN... [more]
RAN_MACFA2.609e-1433.90GTP-binding nuclear protein Ran OS=Macaca fascicul... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258607 ID=DY258607; Name=DY258607; organism=Citrus clementina; type=EST; length=1124bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGACATTAGTAGAC
GACAGACATTTGAAAGCATTGGCAGATGGCTTAATGAACTTCACACTCAC
TCAAATATGAATGTAGTAACCATACTTGTGGGCAACAAGTCAAAACTCAA
AAAAGCGAGGGAAGGAACTACTGCCAAAGGCAGGGCCTTGGCCAAAGCCC
AGGGTTTATTTTTCCAGGGAACTTTCCCTTCTTGATTTCCCCAAATGGAA
CTGGTGCCTTTCAAAAGGTCCTTCCCCAAAATTTAAAAATAAACTAGCCC
GAAAAGTTTTAAAATCTCTAAAACTTAAACCCAAAAGATTCTCCCCCTTT
TCCCCGGGGAAAAAAAATATTTTT
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