DY258607

Overview
NameDY258607
Unique NameDY258607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: GSP1_ENCCU (GTP-binding nuclear protein GSP1 OS=Encephalitozoon cuniculi GN=GSP1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.450e-14
Identity = 39/123 (31.71%), Postives = 63/123 (51.22%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIG-VEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKARE 913
            +K+ LIGD  VGK+  + R     F  N  +T+G V      +D  G  +K  +WDTAGQE+   +   YY GA GA+  +D++ R T +++ RW+ E           ++  NK  +K  ++
Sbjct:    8 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAIFFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQK 130          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: SPG1_SCHPO (Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe GN=spg1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.811e-14
Identity = 46/145 (31.72%), Postives = 71/145 (48.97%), Query Frame = 2
Query:  530 RAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNK-----SKLKKAREGTTAKGRALAKA 949
            R  +   KV +IGDS++GK++L+  + +  F   S  T+GV F  + + I   E+   IWD  GQ  F  +       AV  L ++D+SR+ T  SI  W  +     N   V IL+G K     +  ++ +E  T + R  AKA
Sbjct:    5 RKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGF-NKTAVPILIGTKYDHFMTFPREDQEEITKQARRYAKA 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RB32D_DICDI (Ras-related protein Rab-32D OS=Dictyostelium discoideum GN=rab32D PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.811e-14
Identity = 42/120 (35.00%), Postives = 68/120 (56.67%), Query Frame = 2
Query:  551 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHS------NMNVVTILVGNKS 892
            K++LIGD  VGK+++L R    +F    KSTIG +F ++    N      Q+WDTAGQE++  +TSA++R +   +LV+DIS   +F ++  W  +  + S         +  +L+ NKS
Sbjct:   11 KLILIGDVNVGKTSILHRLIFSKFTEEYKSTIGADFLSKTFYQNDIITHIQLWDTAGQEKYWCLTSAFWRTSDAVILVFDISNESSFRNLNFWYKQFKSKSINPDGTEKQLPILLLANKS 130          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RALB_PONAB (Ras-related protein Ral-B OS=Pongo abelii GN=RALB PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.590e-14
Identity = 49/158 (31.01%), Postives = 88/158 (55.70%), Query Frame = 2
Query:  506 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNE-LHTHSNMNVVTIL-VGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            MA    + ++   L KV+++G   VGKS L  +F  DEF  + + T    ++ +K+ ++G+EV+  I DTAGQE + A+   Y+R   G LLV+ I+  ++F +   +  + L   +  + + +L VGNKS L++ R+    + R+ A+  G+ +  T
Sbjct:    1 MAANKSKGQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVET 157          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RALB_MOUSE (Ras-related protein Ral-B OS=Mus musculus GN=Ralb PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.590e-14
Identity = 48/145 (33.10%), Postives = 82/145 (56.55%), Query Frame = 2
Query:  545 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNE-LHTHSNMNVVTIL-VGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            L KV+++G   VGKS L  +F  DEF  + + T    ++ +K+ ++G+EV+  I DTAGQE + A+   Y+R   G LLV+ I+  ++F +   +  + L   S  + + +L VGNKS L++ R+    + R  A+  G+ +  T
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKSEEDKIPLLVVGNKSDLEERRQVPVDEARGKAEEWGVQYVET 157          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RALB_MACFA (Ras-related protein Ral-B OS=Macaca fascicularis GN=RALB PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.590e-14
Identity = 49/158 (31.01%), Postives = 88/158 (55.70%), Query Frame = 2
Query:  506 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNE-LHTHSNMNVVTIL-VGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            MA    + ++   L KV+++G   VGKS L  +F  DEF  + + T    ++ +K+ ++G+EV+  I DTAGQE + A+   Y+R   G LLV+ I+  ++F +   +  + L   +  + + +L VGNKS L++ R+    + R+ A+  G+ +  T
Sbjct:    1 MAANKSKGQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVET 157          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RALB_HUMAN (Ras-related protein Ral-B OS=Homo sapiens GN=RALB PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.590e-14
Identity = 49/158 (31.01%), Postives = 88/158 (55.70%), Query Frame = 2
Query:  506 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNE-LHTHSNMNVVTIL-VGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            MA    + ++   L KV+++G   VGKS L  +F  DEF  + + T    ++ +K+ ++G+EV+  I DTAGQE + A+   Y+R   G LLV+ I+  ++F +   +  + L   +  + + +L VGNKS L++ R+    + R+ A+  G+ +  T
Sbjct:    1 MAANKSKGQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVET 157          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: GSP1_CANAL (GTP-binding nuclear protein GSP1/Ran OS=Candida albicans GN=GSP1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.590e-14
Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAR 910
            FK+VL+GD   GK+  + R    EF     +T+GVE        N  E+K  +WDTAGQE+F  +   YY      ++++D++ R T++++  W  +L      N+  +L GNK  +K+ +
Sbjct:    8 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVNPLGFHTNFGELKFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKERK 127          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAN_CAEEL (GTP-binding nuclear protein ran-1 OS=Caenorhabditis elegans GN=ran-1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.913e-14
Identity = 38/118 (32.20%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLK 901
            FK+VL+GD   GK+  + R    EF     +T+GVE        N  +++  +WDTAGQE+F  +   YY     A++++D++ R T++++  W  +L      N+  +L GNK  +K
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDL-ARVCENIPIVLCGNKVDVK 126          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RALA_SAGOE (Ras-related protein Ral-A OS=Saguinus oedipus GN=RALA PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.913e-14
Identity = 48/134 (35.82%), Postives = 77/134 (57.46%), Query Frame = 2
Query:  545 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNE-LHTHSNMNVVTILVGNKSKLKKAREGTT--AKGRA 937
            L KV+++G   VGKS L  +F  DEF  + + T    ++ +K+ ++G+EV+  I DTAGQE + A+   Y+R   G L V+ I+  ++F +   +  + L    + NV  +LVGNKS L+  R+ +   AK RA
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 146          
The following BLAST results are available for this feature:
BLAST of DY258607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSP1_ENCCU4.450e-1431.71GTP-binding nuclear protein GSP1 OS=Encephalitozoo... [more]
SPG1_SCHPO5.811e-1431.72Septum-promoting GTP-binding protein 1 OS=Schizosa... [more]
RB32D_DICDI5.811e-1435.00Ras-related protein Rab-32D OS=Dictyostelium disco... [more]
RALB_PONAB7.590e-1431.01Ras-related protein Ral-B OS=Pongo abelii GN=RALB ... [more]
RALB_MOUSE7.590e-1433.10Ras-related protein Ral-B OS=Mus musculus GN=Ralb ... [more]
RALB_MACFA7.590e-1431.01Ras-related protein Ral-B OS=Macaca fascicularis G... [more]
RALB_HUMAN7.590e-1431.01Ras-related protein Ral-B OS=Homo sapiens GN=RALB ... [more]
GSP1_CANAL7.590e-1432.23GTP-binding nuclear protein GSP1/Ran OS=Candida al... [more]
RAN_CAEEL9.913e-1432.20GTP-binding nuclear protein ran-1 OS=Caenorhabditi... [more]
RALA_SAGOE9.913e-1435.82Ras-related protein Ral-A OS=Saguinus oedipus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258607 ID=DY258607; Name=DY258607; organism=Citrus clementina; type=EST; length=1124bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGACATTAGTAGAC
GACAGACATTTGAAAGCATTGGCAGATGGCTTAATGAACTTCACACTCAC
TCAAATATGAATGTAGTAACCATACTTGTGGGCAACAAGTCAAAACTCAA
AAAAGCGAGGGAAGGAACTACTGCCAAAGGCAGGGCCTTGGCCAAAGCCC
AGGGTTTATTTTTCCAGGGAACTTTCCCTTCTTGATTTCCCCAAATGGAA
CTGGTGCCTTTCAAAAGGTCCTTCCCCAAAATTTAAAAATAAACTAGCCC
GAAAAGTTTTAAAATCTCTAAAACTTAAACCCAAAAGATTCTCCCCCTTT
TCCCCGGGGAAAAAAAATATTTTT
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