DY258607

Overview
NameDY258607
Unique NameDY258607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RABP_DICDI (Ras-related protein RabP OS=Dictyostelium discoideum GN=rabP PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.884e-13
Identity = 41/119 (34.45%), Postives = 68/119 (57.14%), Query Frame = 2
Query:  551 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNM--NVVTILVGNKSKLK 901
            K++ +G+  VGKS++L RF + +   N+       F+T+K  I+   V  Q WDT+GQERF +++S++YR   G +L + +    +F+++  W +EL         V  ILVGNK  L+
Sbjct:   10 KIITVGNYGVGKSSILKRFHQVDLDDNTTG-----FKTKKFIIDNHHVSVQTWDTSGQERFCSLSSSFYRNCDGVILCFSVDNEDSFKALDLWRDELIKFGYFPDRVPFILVGNKFDLE 123          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.767e-13
Identity = 36/115 (31.30%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  545 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNK 889
            +FK++LIGD   GK+ L+ R    EF     +T+GVE +    + N    +  +WDTAGQER+  +   Y+  +  A++++D++   T+ ++ RW  +L      N+  ++ GNK
Sbjct:   10 IFKLILIGDGGTGKTTLVKRHLTGEFKMQYNATLGVEVEQLLFNTNRGVFRIDVWDTAGQERYGGLRDGYFVQSQCAIIMFDVASSNTYNNVKRWHRDL-VRVCGNIPIVICGNK 123          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB20_MOUSE (Ras-related protein Rab-20 OS=Mus musculus GN=Rab20 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 3.767e-13
Identity = 51/135 (37.78%), Postives = 75/135 (55.56%), Query Frame = 2
Query:  551 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQT-FESIGRWLNELHTHSNMNVVTILVGNKSKLKKAR--EGTTAKGRALAK 946
            K+VL+GD  VGK++LL R+    F P++ ST+G  F  ++     +     IWDTAG+E+F  + S Y RGA   +L YD++  Q+ FE   R+L    T +N + +  +VGNK  L   R  EG   +G A  K
Sbjct:    7 KIVLLGDMNVGKTSLLQRYMERRF-PDTVSTVGGAFYLKQW----RSFNISIWDTAGREQFHGLGSLYCRGAAAIILTYDVNHPQSLFELEDRFLGLTET-ANNDCLFAIVGNKVDLTSERDTEGGEKEGPASGK 135          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAS3_RHIRA (Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.920e-13
Identity = 46/143 (32.17%), Postives = 75/143 (52.45%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNEL-HTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            +K+V++G   VGKS L  +F +  F      TI   ++ Q + I+ +     + DTAGQE + A+   Y R   G +LVY I+ R +FE +  +  ++       +   +LVGNK  L+  R+ ++ +GR LAK+ G  F  T
Sbjct:   10 YKIVIVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCV-IDDETALLDVLDTAGQEEYSAMREQYMRNGEGFVLVYSITSRLSFEEVNTFYQQIRRVKDRDSFPMVLVGNKCDLEGDRQVSSQEGRDLAKSFGCPFSET 151          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAP2A_PONAB (Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2A PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 4.920e-13
Identity = 47/143 (32.87%), Postives = 76/143 (53.15%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNE-LHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            +KVV++G   VGKS L  +F    F      TI  +F  ++++++      +I DTAG E+F ++   Y +   G +LVY +  +Q+F+ I    ++ +       V  ILVGNK  L+  RE ++ +GRALA+  G  F  T
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEEWGCPFMET 145          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAP2A_MOUSE (Ras-related protein Rap-2a OS=Mus musculus GN=Rap2a PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 4.920e-13
Identity = 47/143 (32.87%), Postives = 76/143 (53.15%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNE-LHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            +KVV++G   VGKS L  +F    F      TI  +F  ++++++      +I DTAG E+F ++   Y +   G +LVY +  +Q+F+ I    ++ +       V  ILVGNK  L+  RE ++ +GRALA+  G  F  T
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEEWGCPFMET 145          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAN_DROME (GTP-binding nuclear protein Ran OS=Drosophila melanogaster GN=ran PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.920e-13
Identity = 38/118 (32.20%), Postives = 62/118 (52.54%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLK 901
            FK VL+GD   GK+  + R    EF     +T+GVE        N   ++  +WDTAGQE+F  +   YY     A++++D++ R T++++  W  +L      N+  +L GNK  +K
Sbjct:   11 FKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIK 127          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAN_DICDI (GTP-binding nuclear protein Ran OS=Dictyostelium discoideum GN=ranA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.920e-13
Identity = 40/123 (32.52%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  533 AEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLK 901
            AE    K+VL+GD  VGK+  + R    EF P    T+GV         N  ++   +WDTAGQE+F  +   YY     A++++D++ R +++++  W ++L T    N+  +L GNK  +K
Sbjct:    2 AEKEQIKLVLVGDGGVGKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGKIHFNVWDTAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHSDL-TRVCENIPIVLCGNKVDVK 123          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: GSP1_YARLI (GTP-binding nuclear protein GSP1/Ran OS=Yarrowia lipolytica GN=GSP1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.920e-13
Identity = 36/121 (29.75%), Postives = 64/121 (52.89%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAR 910
            FK+VL+GD   GK+  + R    EF     +T+GVE        +   ++  +WDTAGQE+F  +   YY      ++++D++ R T++++  W  +L      N+  +L GNK  +K+ +
Sbjct:    8 FKLVLVGDGGTGKTTFVKRHETGEFVNRYNATLGVEVHPLNFATDCGNIRFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKERK 127          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAP2C_MOUSE (Ras-related protein Rap-2c OS=Mus musculus GN=Rap2c PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.425e-13
Identity = 47/143 (32.87%), Postives = 76/143 (53.15%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNEL-HTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            +KVV++G   VGKS L  +F    F      TI  +F  ++++++      +I DTAG E+F ++   Y +   G +LVY +  +Q+F+ I    +++        V  ILVGNK  L+  RE  +++GRALA+  G  F  T
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMET 145          
The following BLAST results are available for this feature:
BLAST of DY258607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABP_DICDI2.884e-1334.45Ras-related protein RabP OS=Dictyostelium discoide... [more]
RANL_DROME3.767e-1331.30GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
RAB20_MOUSE3.767e-1337.78Ras-related protein Rab-20 OS=Mus musculus GN=Rab2... [more]
RAS3_RHIRA4.920e-1332.17Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3... [more]
RAP2A_PONAB4.920e-1332.87Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2... [more]
RAP2A_MOUSE4.920e-1332.87Ras-related protein Rap-2a OS=Mus musculus GN=Rap2... [more]
RAN_DROME4.920e-1332.20GTP-binding nuclear protein Ran OS=Drosophila mela... [more]
RAN_DICDI4.920e-1332.52GTP-binding nuclear protein Ran OS=Dictyostelium d... [more]
GSP1_YARLI4.920e-1329.75GTP-binding nuclear protein GSP1/Ran OS=Yarrowia l... [more]
RAP2C_MOUSE6.425e-1332.87Ras-related protein Rap-2c OS=Mus musculus GN=Rap2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258607 ID=DY258607; Name=DY258607; organism=Citrus clementina; type=EST; length=1124bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGACATTAGTAGAC
GACAGACATTTGAAAGCATTGGCAGATGGCTTAATGAACTTCACACTCAC
TCAAATATGAATGTAGTAACCATACTTGTGGGCAACAAGTCAAAACTCAA
AAAAGCGAGGGAAGGAACTACTGCCAAAGGCAGGGCCTTGGCCAAAGCCC
AGGGTTTATTTTTCCAGGGAACTTTCCCTTCTTGATTTCCCCAAATGGAA
CTGGTGCCTTTCAAAAGGTCCTTCCCCAAAATTTAAAAATAAACTAGCCC
GAAAAGTTTTAAAATCTCTAAAACTTAAACCCAAAAGATTCTCCCCCTTT
TCCCCGGGGAAAAAAAATATTTTT
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