DY258607

Overview
NameDY258607
Unique NameDY258607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RASB_DICDI (Ras-like protein rasB OS=Dictyostelium discoideum GN=rasB PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.165e-12
Identity = 48/143 (33.57%), Postives = 72/143 (50.35%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNE-LHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            +K+V++G   VGKS L  +F ++ F      TI   ++ Q   ++       I DTAGQ+ + A+   Y R   G L VYD++ R +FE I     + +    N  V  +LVGNK  L+  RE T  +G  LAK+  + F  T
Sbjct:    7 YKLVVMGGGGVGKSALTIQFIQNHFIEEYDPTIEDSYRRQ-CQVDEDTCLLDILDTAGQDDYSAMRDQYMRTGQGFLCVYDVTSRTSFEEINVVREQIIRVKDNDKVPIVLVGNKCDLENLREVTEGEGSELAKSFSVPFLET 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAS2_NEUCR (Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 5.439e-12
Identity = 49/160 (30.63%), Postives = 79/160 (49.38%), Query Frame = 2
Query:  545 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELH--------------------THSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            L+K+V++GD  VGK+ L  +   + F      TI   ++ Q + I+G+    ++ DTAGQE + A+   + R   G +LVY IS R +F  I ++ +++                     T+ +  V  +LVGNKS     RE +T +G ALA+  G  F
Sbjct:    8 LYKLVVLGDGGVGKTALTIQLCLEHFVETYDPTIEDSYRKQVV-IDGQACMLEVLDTAGQEEYTALRDQWIRDGEGFVLVYSISSRSSFARIKKFHHQIQRVKESTSSPSAYPGSSPLAATNPSAPVPIMLVGNKSDRVTEREVSTQEGHALARELGCEF 166          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAC9_ARATH (Rac-like GTP-binding protein ARAC9 OS=Arabidopsis thaliana GN=ARAC9 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.439e-12
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 2
Query:  506 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIG-RWLNELHTHSNMNVVTILVGNKSKLK 901
            MA  S          K V +GD AVGK+ LL  +  + F  +   T+   F    + ++GK V   +WDTAGQE +  V    YRGA   +L + +  R +FE+I  +W+ EL  H    V  +LVG KS L+
Sbjct:    5 MAATSTSSATATTFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFNANVL-VDGKTVNLGLWDTAGQEDYNRVRPLSYRGADVFILAFSLISRPSFENIAKKWVPELR-HYAPTVPIVLVGTKSDLR 135          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB20_HUMAN (Ras-related protein Rab-20 OS=Homo sapiens GN=RAB20 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.439e-12
Identity = 44/125 (35.20%), Postives = 68/125 (54.40%), Query Frame = 2
Query:  551 KVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTA 925
            K+VL+GD  VGK++LL R+    F P++ ST+G  F  ++     +     IWDTAG+E+F  + S Y RGA   +L YD++ RQ+   +      L   ++ + +  +VGNK  L    EG  A
Sbjct:    7 KIVLLGDMNVGKTSLLQRYMERRF-PDTVSTVGGAFYLKQW----RSYNISIWDTAGREQFHGLGSMYCRGAAAIILTYDVNHRQSLVELEDRFLGLTDTASKDCLFAIVGNKVDL--TEEGALA 124          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RASC_DICDI (Ras-like protein rasC OS=Dictyostelium discoideum GN=rasC PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.278e-12
Identity = 47/145 (32.41%), Postives = 79/145 (54.48%), Query Frame = 2
Query:  545 LFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTI-LVGNKSKL-KKAREGTTAKGRALAKAQGLFFQGT 973
            L K+V++GD  VGKS L  +  +++F      TI   ++ Q ++I+ +     I DTAGQE + A+   Y R   G L+VY I  R +FE++  +  ++    +++   I ++GNK+ L  K R+    +G+ LAK+ G  F  T
Sbjct:    4 LLKLVIVGDGGVGKSALTIQLTQNQFIAEYDPTIENSYRKQ-VNIDEEVYMLDILDTAGQEEYSAMRDQYIRSGRGFLIVYSIISRASFEAVTTFREQILRVKDLSTYPIVIIGNKADLPDKDRKVPPMEGKELAKSFGAPFLET 147          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RRAS2_MOUSE (Ras-related protein R-Ras2 OS=Mus musculus GN=Rras2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.212e-11
Identity = 47/148 (31.76%), Postives = 76/148 (51.35%), Query Frame = 2
Query:  506 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNE-LHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAK 946
            MA     D +    +++V++G   VGKS L  +F +  F  +   TI   + T++  I+ +  +  I DTAGQE F A+   Y R   G LLV+ ++ R +FE I ++  + L          IL+GNK+ L   R+ T  +G+ LA+
Sbjct:    1 MAAAGWRDGSGQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLAR 147          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RRAS2_HUMAN (Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.212e-11
Identity = 47/148 (31.76%), Postives = 76/148 (51.35%), Query Frame = 2
Query:  506 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNE-LHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAK 946
            MA     D +    +++V++G   VGKS L  +F +  F  +   TI   + T++  I+ +  +  I DTAGQE F A+   Y R   G LLV+ ++ R +FE I ++  + L          IL+GNK+ L   R+ T  +G+ LA+
Sbjct:    1 MAAAGWRDGSGQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLAR 147          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RIT2_RAT (GTP-binding protein Rit2 OS=Rattus norvegicus GN=Rit2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.212e-11
Identity = 42/134 (31.34%), Postives = 71/134 (52.99%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNEL-HTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAK 946
            +KVV++G   VGKS +  +F   +F      TI   ++TQ + I+ +     I DTAGQ  F A+   Y RG  G ++ Y ++ RQ+F+   ++   +        +  +LVGNK  L++ R+ +T +G  LA+
Sbjct:   21 YKVVMLGAGGVGKSAVTMQFISHQFPDYHDPTIEDAYKTQ-VRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDLEQFRQVSTEEGMTLAR 153          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RIT2_HUMAN (GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.212e-11
Identity = 42/134 (31.34%), Postives = 72/134 (53.73%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNEL-HTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAK 946
            +KVV++G   VGKS +  +F   +F      TI   ++TQ + I+ +     I DTAGQ  F A+   Y RG  G ++ Y ++ RQ+F+   ++   +        +  +LVGNK  L++ R+ +T +G +LA+
Sbjct:   21 YKVVMLGAGGVGKSAMTMQFISHQFPDYHDPTIEDAYKTQ-VRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDLEQFRQVSTEEGLSLAQ 153          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAP2B_RAT (Ras-related protein Rap-2b OS=Rattus norvegicus GN=Rap2b PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.212e-11
Identity = 45/143 (31.47%), Postives = 74/143 (51.75%), Query Frame = 2
Query:  548 FKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNE-LHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            +KVV++G   VGKS L  +F    F      TI  +F  ++++++      +I DTAG E+F ++   Y +   G +LVY +  +Q+F+ I    ++ +       V  ILVGNK  L+  RE +  +G+ALA+     F  T
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMET 145          
The following BLAST results are available for this feature:
BLAST of DY258607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASB_DICDI4.165e-1233.57Ras-like protein rasB OS=Dictyostelium discoideum ... [more]
RAS2_NEUCR5.439e-1230.63Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 S... [more]
RAC9_ARATH5.439e-1235.34Rac-like GTP-binding protein ARAC9 OS=Arabidopsis ... [more]
RAB20_HUMAN5.439e-1235.20Ras-related protein Rab-20 OS=Homo sapiens GN=RAB2... [more]
RASC_DICDI9.278e-1232.41Ras-like protein rasC OS=Dictyostelium discoideum ... [more]
RRAS2_MOUSE1.212e-1131.76Ras-related protein R-Ras2 OS=Mus musculus GN=Rras... [more]
RRAS2_HUMAN1.212e-1131.76Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS... [more]
RIT2_RAT1.212e-1131.34GTP-binding protein Rit2 OS=Rattus norvegicus GN=R... [more]
RIT2_HUMAN1.212e-1131.34GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 P... [more]
RAP2B_RAT1.212e-1131.47Ras-related protein Rap-2b OS=Rattus norvegicus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258607 ID=DY258607; Name=DY258607; organism=Citrus clementina; type=EST; length=1124bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGACATTAGTAGAC
GACAGACATTTGAAAGCATTGGCAGATGGCTTAATGAACTTCACACTCAC
TCAAATATGAATGTAGTAACCATACTTGTGGGCAACAAGTCAAAACTCAA
AAAAGCGAGGGAAGGAACTACTGCCAAAGGCAGGGCCTTGGCCAAAGCCC
AGGGTTTATTTTTCCAGGGAACTTTCCCTTCTTGATTTCCCCAAATGGAA
CTGGTGCCTTTCAAAAGGTCCTTCCCCAAAATTTAAAAATAAACTAGCCC
GAAAAGTTTTAAAATCTCTAAAACTTAAACCCAAAAGATTCTCCCCCTTT
TCCCCGGGGAAAAAAAATATTTTT
back to top