DY258607

Overview
NameDY258607
Unique NameDY258607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1180 contig Ccv1_Contig1180:1..1124. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 7.537e-38
Identity = 77/144 (53.47%), Postives = 98/144 (68.06%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR TF  +  WL +   HSN N+V +L+GNKS L+  RE    +G A A+  GL F  T
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMET 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 7.537e-38
Identity = 77/144 (53.47%), Postives = 98/144 (68.06%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR TF  +  WL +   HSN N+V +L+GNKS L+  RE    +G A A+  GL F  T
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMET 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 9.844e-38
Identity = 77/144 (53.47%), Postives = 98/144 (68.06%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR TF  +  WL +   HSN N+V +L+GNKS L+  RE    +G A A+  GL F  T
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMET 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.679e-37
Identity = 76/144 (52.78%), Postives = 98/144 (68.06%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            YLFK ++IGD+ VGKS LL +F    F P    T+GVEF  + + I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR TF  +  WL +   HSN N+V +L+GNKS L+  RE    +G A A+  GL F  T
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMET 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 1.679e-37
Identity = 76/142 (53.52%), Postives = 100/142 (70.42%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            +Y+FK ++IGD  VGKS LL +F  ++F P+S  TIGVEF T+ +D+N K++K QIWDTAGQERFRAVT +YYRGA GALLVYDI+RR T+  +  WL +    +N N V +L+GNK  L+  R+ T  +  A AK  GL F
Sbjct:    6 EYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIF 147          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.193e-37
Identity = 75/144 (52.08%), Postives = 100/144 (69.44%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + ++I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR+TF  +  WL +   HS+ N+V +L+GNKS L+  R+    +G A A+  GL F  T
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMET 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.193e-37
Identity = 75/144 (52.08%), Postives = 100/144 (69.44%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + ++I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR+TF  +  WL +   HS+ N+V +L+GNKS L+  R+    +G A A+  GL F  T
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMET 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 6.381e-37
Identity = 75/144 (52.08%), Postives = 97/144 (67.36%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + ++I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR+TF  +  WL +   H+N N+  +L+GNK  L   R  TT +G   AK  GL F  T
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLET 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 6.381e-37
Identity = 75/144 (52.08%), Postives = 97/144 (67.36%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + ++I+GK++K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR+TF  +  WL +   H+N N+  +L+GNK  L   R  TT +G   AK  GL F  T
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLET 148          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 7.055e-36
Identity = 74/149 (49.66%), Postives = 106/149 (71.14%), Query Frame = 2
Query:  518 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            S   ++ D + K++LIGDS VGKS LL RF  D+F P+  +TIG++F+ + +DINGK+VK Q+WDTAGQERFR +T+AYYRGA+G +LVYD++  +TF +I +W   ++ H+N     +LVGNKS + + R  T  +G ALAK  G+ F
Sbjct:   11 SGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPF 158          
The following BLAST results are available for this feature:
BLAST of DY258607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_CHICK7.537e-3853.47Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA7.537e-3853.47Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB2_LYMST9.844e-3853.47Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2A_RAT1.679e-3752.78Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB14_DICDI1.679e-3753.52Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
RAB2B_MOUSE2.193e-3752.08Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2B_HUMAN2.193e-3752.08Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
YPTV4_VOLCA6.381e-3752.08GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE6.381e-3752.08GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
SEC4_YEAST7.055e-3649.66Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258607 ID=DY258607; Name=DY258607; organism=Citrus clementina; type=EST; length=1124bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGACATTAGTAGAC
GACAGACATTTGAAAGCATTGGCAGATGGCTTAATGAACTTCACACTCAC
TCAAATATGAATGTAGTAACCATACTTGTGGGCAACAAGTCAAAACTCAA
AAAAGCGAGGGAAGGAACTACTGCCAAAGGCAGGGCCTTGGCCAAAGCCC
AGGGTTTATTTTTCCAGGGAACTTTCCCTTCTTGATTTCCCCAAATGGAA
CTGGTGCCTTTCAAAAGGTCCTTCCCCAAAATTTAAAAATAAACTAGCCC
GAAAAGTTTTAAAATCTCTAAAACTTAAACCCAAAAGATTCTCCCCCTTT
TCCCCGGGGAAAAAAAATATTTTT
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