DY258607

Overview
NameDY258607
Unique NameDY258607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1180 contig Ccv1_Contig1180:1..1124. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 5.972e-35
Identity = 70/141 (49.65%), Postives = 98/141 (69.50%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            Y+FK ++IGD  VGKS LL +F   +F  +   TIGVEF T+ ++++G+++K QIWDTAGQERFRAVT +YYRGA GAL+VYDI+RR T+  +  WL +    +N N V IL+GNK+ L+  R+ T  + +  A+  GL F
Sbjct:   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLF 150          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 7.800e-35
Identity = 72/145 (49.66%), Postives = 103/145 (71.03%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++ +GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ +++F ++ +WLNE+  +++ NV  +LVGNKS L   +   T   +A A   G+ F  T
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMET 150          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 7.800e-35
Identity = 72/141 (51.06%), Postives = 93/141 (65.96%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + ++I+ K +K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR+TF  +  WL +   H+N N+  +LVGNK  L   R  +  +G   AK  GL F
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIF 145          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.019e-34
Identity = 73/145 (50.34%), Postives = 105/145 (72.41%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++ +GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ +++F ++ +WLNE+  +++ NV  +LVGNK  L + R  +   G+ALA   G+ F  T
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLET 150          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.019e-34
Identity = 71/143 (49.65%), Postives = 103/143 (72.03%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGT-TAKGRALAKAQGLFF 964
            DYL K++LIGDS VGKS LL RF+   F  +  +TIG++F+ + ++++GK +K QIWDTAGQERFR +T+AYYRGA+G LLVYD++   +F +I  W+  +  H++ NV  ILVGNK+ + +++    TAKG+ALA   G+ F
Sbjct:   13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKF 155          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.019e-34
Identity = 71/143 (49.65%), Postives = 103/143 (72.03%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGT-TAKGRALAKAQGLFF 964
            DYL K++LIGDS VGKS LL RF+   F  +  +TIG++F+ + ++++GK +K QIWDTAGQERFR +T+AYYRGA+G LLVYD++   +F +I  W+  +  H++ NV  ILVGNK+ + +++    TAKG+ALA   G+ F
Sbjct:   13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKF 155          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.330e-34
Identity = 68/152 (44.74%), Postives = 106/152 (69.74%), Query Frame = 2
Query:  518 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFFQGT 973
            + +  A DYL K++LIGDS VGKS LL RF+ D F P+  +TIG++F+ + +++ GK +K QIWDTAGQERFR +T+AYYRGA+G LLVYD++  ++F +I  W+  +  H+  +V  +L+GNK  + + +   +++G++LA   G+ F  T
Sbjct:    6 TNKSAAYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLET 157          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.330e-34
Identity = 72/141 (51.06%), Postives = 92/141 (65.25%), Query Frame = 2
Query:  542 YLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGLFF 964
            YLFK ++IGD+ VGKS LL +F    F P    TIGVEF  + + I+ K +K QIWDTAGQE FR++T +YYRGA GALLVYDI+RR+TF  +  WL +   H+N N+  +LVGNK  L   R  +  +G   AK  GL F
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIF 145          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB19_XENLA (Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.738e-34
Identity = 71/147 (48.30%), Postives = 102/147 (69.39%), Query Frame = 2
Query:  518 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKLKKAREGTTAKGRALAKAQGL 958
            S ED   D+LFK++LIGDS VGK+ ++ RF    F  N ++TIGV+F  + ++INGK+VK Q+WDTAGQERFR +T +YYR A GA++ YDI+RRQ+FES+  W+ E   +   N++ +L+GNKS L + R+    +   LA+  GL
Sbjct:    6 SLEDDPFDFLFKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAGKYGAANLMLMLMGNKSDLAEKRQILFEEACTLAEKHGL 152          
BLAST of DY258607 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.964e-34
Identity = 71/132 (53.79%), Postives = 101/132 (76.52%), Query Frame = 2
Query:  539 DYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFESIGRWLNELHTHSNMNVVTILVGNKSKL--KKAREGTTAK 928
            DYLFK++LIGDS VGKS LL RFA D +  +  STIGV+F+ + ++++GK +K QIWDTAGQERFR +TS+YYRGA G ++VYD++ R+++ ++ +WL E+  +++ NV  +LVGNKS L  KK  + TTAK
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAK 137          
The following BLAST results are available for this feature:
BLAST of DY258607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB14_CHICK5.972e-3549.65Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
YPTM2_MAIZE7.800e-3549.66GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RAB2A_MAIZE7.800e-3551.06Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RIC1_ORYSJ1.019e-3450.34Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RB1BV_BETVU1.019e-3449.65Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
ARA3_ARATH1.019e-3449.65Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RAB8A_DICDI1.330e-3444.74Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB2B_MAIZE1.330e-3451.06Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB19_XENLA1.738e-3448.30Ras-related protein Rab-19 OS=Xenopus laevis GN=ra... [more]
RAB1B_MACFA2.964e-3453.79Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258607 ID=DY258607; Name=DY258607; organism=Citrus clementina; type=EST; length=1124bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGACATTAGTAGAC
GACAGACATTTGAAAGCATTGGCAGATGGCTTAATGAACTTCACACTCAC
TCAAATATGAATGTAGTAACCATACTTGTGGGCAACAAGTCAAAACTCAA
AAAAGCGAGGGAAGGAACTACTGCCAAAGGCAGGGCCTTGGCCAAAGCCC
AGGGTTTATTTTTCCAGGGAACTTTCCCTTCTTGATTTCCCCAAATGGAA
CTGGTGCCTTTCAAAAGGTCCTTCCCCAAAATTTAAAAATAAACTAGCCC
GAAAAGTTTTAAAATCTCTAAAACTTAAACCCAAAAGATTCTCCCCCTTT
TCCCCGGGGAAAAAAAATATTTTT
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