DY258611
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFC5_HUMAN (Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1) HSP 1 Score: 308.916 bits (790), Expect = 3.413e-83 Identity = 158/275 (57.45%), Postives = 207/275 (75.27%), Query Frame = 3 Query: 3 TILAVARKLY-GAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARSAIVAAA 824 TILA A++LY ++ +M+LELN+SDDRGID++R I FAST++ K KLV+LDEADAMT+DAQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV+E E +D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+ F +++ I+E+K KGLAL DI+ E+ +FV ++ PS VR+ L+ +ADIEYRLS G N+K+QL S+I+ F R IVA A Sbjct: 69 TILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA 340
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFC5_MOUSE (Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1) HSP 1 Score: 307.375 bits (786), Expect = 9.931e-83 Identity = 159/275 (57.82%), Postives = 206/275 (74.91%), Query Frame = 3 Query: 3 TILAVARKLY-GAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARSAIVAAA 824 TILA A++LY ++ +M+LELN+SDDRGID+VR I FAST++ K KLV+LDEADAMT+DAQ ALRRVIEK+T+NTRF LICN ++KIIPALQSRCTRFRF PL P + RL+HV++ E +D++E G+ ALV L +GDMR+ALNILQST+MA ++TEE VY CTG+PL DI I W+LN+ F ++K I E+K KGLAL DI+ EV +FV ++ PS VR+ L+ +ADIEYRLS G ++K+QL S+I+ F R IVA A Sbjct: 68 TILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQDFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQLSSLIAAFQVTRDLIVAEA 339
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFC5_DICDI (Probable replication factor C subunit 5 OS=Dictyostelium discoideum GN=rfc5 PE=3 SV=1) HSP 1 Score: 277.33 bits (708), Expect = 1.101e-73 Identity = 146/269 (54.28%), Postives = 190/269 (70.63%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMAS--QQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQAR 803 TI A+ARKLYG Y M+LELN+SDDRGIDVVR+QI+ FAS+ F F KL++LDEAD+MT AQ ALRRVIEKYTK TRF ++CN V KIIPALQSRCTRFRF+PL RLK +IE E + V + A++ L GDMRK LNILQS M+S ITEEA+Y CTG P+P DIE + WLLN + ++F+ IS++K +KGL+L DI+ + FV +I + + + +L++ L+DIEY LS G ++KLQL S++ F +R Sbjct: 73 TIQAIARKLYGDNYSRMVLELNASDDRGIDVVREQIKTFASSMFF-FNTTVPYKLIILDEADSMTNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKENVKVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIELMVDWLLNSDYEEAFQNISDLKKKKGLSLNDIIATLQKFVVQIDLDNVILCKLLSHLSDIEYNLSIGSSEKLQLGSLVGCFQLSR 340
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFC3_SCHPO (Replication factor C subunit 3 OS=Schizosaccharomyces pombe GN=rfc3 PE=1 SV=2) HSP 1 Score: 260.766 bits (665), Expect = 1.066e-68 Identity = 132/275 (48.00%), Postives = 192/275 (69.82%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARSAIVAAAK 827 TILA ARK+YG Y N ++ELN+SDDRGID VR+QI++FAST+ ++ K+++LDEADAMT AQ ALRRVIEKYTKN RF +ICN +NKI PA+QSRCTRFRF PL P + + + HVI++E ++ A++RL GDMRKALNILQ+ H A I A+Y C G+P P DI+ ++N+ F +F IS +K +KGLAL DI+ + + ++++ + ++ +++ LA IE+R+SFGC++K+QL ++I++ ++ + AAK Sbjct: 72 TILACARKIYGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQI---FASTFKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVGHPHPSDIDYFLKSIMNDEFVIAFNTISSIKQQKGLALQDILTCIFEALDELEIKPNAKIFILDQLATIEHRMSFGCSEKIQLSAMIASI---KTGVDLAAK 340
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFC3_ARXAD (Replication factor C subunit 3 OS=Arxula adeninivorans GN=RFC3 PE=3 SV=1) HSP 1 Score: 238.424 bits (607), Expect = 5.665e-62 Identity = 130/270 (48.15%), Postives = 182/270 (67.41%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM---ASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQA 800 TI+AVAR++YG Y NMILELN+SD+RGIDVVR QI+ FAST Q FS G K LV+LDEADAMT AQ ALRR+IEKY+ +TRF ++ N +K+ PAL SRCTRFRF+PL+ + RL HVIE E +D++ +L+ L +GDMR+ALN+LQ+ + A +QI+EE VY C G+P P DI + +L+ S+ + S +K KGLAL D++ + K+ + + R+ L++ L++IE+RLS G N+ +Q + I Q+ Sbjct: 66 TIIAVARQIYGKNYRNMILELNASDERGIDVVRDQIKTFASTRQIFSSGFK----LVILDEADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRLAHVIEQESVDLSPEAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGSPRPADIRTVLQAVLDGSWESALHTFSYIKQSKGLALADMLTAFAVEFQKLDLQNKTRIALLDGLSEIEWRLSSGGNESIQTSATIGVIKQS 331
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFC5_CAEEL (Probable replication factor C subunit 5 OS=Caenorhabditis elegans GN=F44B9.8 PE=1 SV=3) HSP 1 Score: 234.187 bits (596), Expect = 1.068e-60 Identity = 124/290 (42.76%), Postives = 181/290 (62.41%), Query Frame = 3 Query: 3 TILAVARKLYG-AQYHNMILELNSSDDRGIDVVRQQIQDFAST---QSFSFGVKASV---KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARSAIVAAAK*MSLSSLD 851 T+LA AR++Y + +M+LELN+SD+RGIDVVR I +FA T Q+FS KLV+LDEADAMTKDAQ ALRRVIEKYT N RF +ICN + I+PA+QSRCTRFRFAPL+ + RL++++E E L +T G AL+ + GDMR +N LQST M+ ++E VY C G P PK+++++ LLN+ I G AL D++ + FVF + +P + ++ L ++E LS GC+++ QL ++++ F +A+ V K + + ++ Sbjct: 78 TVLAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPKEMKEVVKTLLNDPSKKCMNTIQTKLFENGYALQDVITHLHDFVFTLDIPDEAMSAIITGLGEVEENLSTGCSNETQLAAVVAAFFEAKRLCVKEMKNLEIEDME 367
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFC3_YEAST (Replication factor C subunit 3 OS=Saccharomyces cerevisiae GN=RFC3 PE=1 SV=1) HSP 1 Score: 227.254 bits (578), Expect = 1.306e-58 Identity = 122/267 (45.69%), Postives = 177/267 (66.29%), Query Frame = 3 Query: 3 TILAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFAST-QSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMA-----SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPS-DVRVRLMNDLADIEYRLSFGCNDKLQLESII 782 TI+A+AR++YG Y NM+LELN+SDDRGIDVVR QI+DFAST Q FS G K L++LDEADAMT AQ ALRRVIE+YTKNTRF ++ N +K+ PAL SRCTRFRF PL + R+ +V+ E L ++ AL+ L NGDMR+ LN+LQS +I+++ +Y C G P P D++ + +L + + + +++++ KGLAL+D++ + + ++ + + RV L+ LADIEY +S G ND++Q ++I Sbjct: 62 TIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFK----LIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVI 324
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_PYRKO (Replication factor C small subunit OS=Pyrococcus kodakaraensis GN=rfcS PE=1 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 4.807e-53 Identity = 101/262 (38.55%), Postives = 175/262 (66.79%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFT 794 LA+AR+L+G + + LELN+SD+RGI+V+R+++++FA T+ AS K++ LDEADA+T+DAQ ALRR +E ++ N RF L CN +KII +QSRC FRF PL + +R++++ E EGL++TE GL A++ + GD+R+A+N+LQ+ +IT+E V+L P+D+ ++ L +F + +++ ++ +R+GL+ D++ ++ VF + +P D +V L + + + +RL G N+ +QLE++++ FT Sbjct: 604 LALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIG---GASFKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRIRYIAENEGLELTEEGLQAILYVAEGDLRRAINVLQAAAALDTKITDENVFLVASRARPEDVREMMTLALEGNFLKAREKLRDILLRQGLSGEDVLIQMHKEVFNLPIPEDKKVALADKIGEYNFRLVEGANEMIQLEALLAQFT 862
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_UNCMA (Replication factor C small subunit OS=Uncultured methanogenic archaeon RC-I GN=rfcS PE=3 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 4.070e-52 Identity = 102/267 (38.20%), Postives = 168/267 (62.92%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQARSA 809 +A+AR+LYG +H+ +ELN+SD+RGIDVVR I++FA T +A K++ LDEADA+T DAQ ALRR +E+Y RF + CN +KII +QSRC +RF PL +T + + + EGL + + G+ AL+ + GDMR+A+N LQS ++ IT + +Y T PK+IE + LN F DS ++ E+ + GL+ DI+ ++ +F++ + DV V L++ + + ++RL+ G ++++Q+E++++ F +A Sbjct: 56 VALARELYGETWHSNFIELNASDERGIDVVRNNIKNFARTAPLG---EAKFKIIFLDEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATIAKDITADVIYQTTSTAKPKEIEDMLKLALNGQFMDSRNKLDELLITYGLSGTDIIDQIYRSMFELGLDEDVLVALVDRIGEADFRLTEGASERIQIEALLAHFKMQGAA 319
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_PYRHO (Replication factor C small subunit OS=Pyrococcus horikoshii GN=rfcS PE=3 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 4.070e-52 Identity = 101/262 (38.55%), Postives = 174/262 (66.41%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFT 794 LA++R+L+G + + LELN+SD+RGI+V+R+++++FA T+ AS K++ LDEADA+T+DAQ ALRR +E ++ N RF L CN +KII +QSRC FRF PL + +RL+++ E EGL++TE GL A++ + GDMR+A+NILQ+ ++IT+E V++ P+DI ++ L +F + +++ E+ +++GL+ D++ ++ VF + + +V L + + + +RL G N+ +QLE++++ FT Sbjct: 591 LALSRELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIG---GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLIQMHKEVFNLPIDEPTKVYLADKIGEYNFRLVEGANEMIQLEALLAQFT 849 The following BLAST results are available for this feature:
BLAST of DY258611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY258611 ID=DY258611; Name=DY258611; organism=Citrus clementina; type=EST; length=1111bpback to top |