DY258624

Overview
NameDY258624
Unique NameDY258624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAPA_DICDI (Ras-related protein rapA OS=Dictyostelium discoideum GN=rapA PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.710e-17
Identity = 55/165 (33.33%), Postives = 87/165 (52.73%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEK-ENTFFMETSALESLNVENALPEVLTQIYR 746
            FK+V++G  GVGKS L  +F +  F  +   TI   +  + + VD      +I DTAG E++ A+   Y +   G +LVY +  + TF  +    ++ LR     ++ ++LVGNK DL   R +STE  +  A K  + +F+E SA   +NVE     ++ QI R
Sbjct:    6 FKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDSNQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSIISNSTFNELPDLREQILRVKDCEDVPMVLVGNKCDLHDQRVISTEQGEELARKFGDCYFLEASAKNKVNVEQIFYNLIRQINR 169          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RASY_DICDI (Ras-like protein rasY OS=Dictyostelium discoideum GN=rasY PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.764e-17
Identity = 60/179 (33.52%), Postives = 96/179 (53.63%), Query Frame = 3
Query:  255 LFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNR--EALEVRDD 782
            L K+ ++GD GVGK+++  +F  N F      TI   +  + + +DD+V    I DTAGQ+   A+   + R   G +LVY VT   +F+ V+ + +++    D  ++ IM++GNK+DL   R V+ ++ +  A      FME SA   LNVE    EV  +  R V R  E+L  +D+
Sbjct:   10 LVKLCIMGDGGVGKTSVTIQFISNHFVHYYDPTIEDSYRKQCL-IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFILVYSVTSRSSFDQVQFFREQIIRVLDRDDVPIMMIGNKSDLDDERQVTFQEGKDLARCLGMSFMEVSAKTRLNVE----EVFNETVRCVKRREESLLKKDN 183          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: DJC27_PONAB (DnaJ homolog subfamily C member 27 OS=Pongo abelii GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.764e-17
Identity = 43/148 (29.05%), Postives = 81/148 (54.73%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSA 689
            KV+ +G++ VGKS ++ R+ +  F  +  +TIG+++    + V D+ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++          NI+ ++  NK D    R V   + + +AE +   + ETSA
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQELGPHGNMENIIFVVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSA 165          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: DJC27_MOUSE (DnaJ homolog subfamily C member 27 OS=Mus musculus GN=Dnajc27 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.764e-17
Identity = 43/148 (29.05%), Postives = 82/148 (55.41%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSA 689
            KV+ +G++ VGKS ++ R+ +  F  +  +TIG+++    ++V D+ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++          NIV ++  NK D    R +   + + +AE +   + ETSA
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQELGPHGNMDNIVFVVCANKIDCSKHRCIDESEGRLWAESKGFLYFETSA 165          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: DJC27_HUMAN (DnaJ homolog subfamily C member 27 OS=Homo sapiens GN=DNAJC27 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.764e-17
Identity = 43/148 (29.05%), Postives = 81/148 (54.73%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSA 689
            KV+ +G++ VGKS ++ R+ +  F  +  +TIG+++    + V D+ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++          NI+ ++  NK D    R V   + + +AE +   + ETSA
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQELGPHGNMENIIFVVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSA 165          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RIT1_MOUSE (GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.145e-16
Identity = 55/163 (33.74%), Postives = 87/163 (53.37%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL--RDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQI 740
            +K+V++G  GVGKS +  +F  + F  +   TI   +  R IR+DD+     I DTAGQ  + A+   Y R   G ++ Y +T   +F  V R  K+L  R     +  ++LVGNK+DL+ LR VS E+  S A + +  F ETSA     +++    ++ +I
Sbjct:   22 YKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIR-IRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEV-REFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQVSKEEGLSLAREFSCPFFETSAAYRYYIDDVFHALVREI 182          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RASU_DICDI (Ras-like protein rasU OS=Dictyostelium discoideum GN=rasU PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.145e-16
Identity = 46/156 (29.49%), Postives = 86/156 (55.13%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEV 728
            ++ ++GD GVGK+++  +F  N F      TI  +   +   +DD+V    I DTAGQ+   AI + + +   G +LVY VT   +F+ ++ +L +++      + I+++ NK+DL   R V+ ++ ++FA +    FME SA   LN++    ++
Sbjct:   16 RLCVMGDGGVGKTSITIQFISNHFVNCYDPTIE-DLYRKQCLIDDQVYMLDILDTAGQDELNAIRNHWIKSCEGFILVYSVTSRSSFDQIQSFLDQIKFLKSEKVPIIMIANKSDLDDERQVTYQEGENFANRFGMSFMEVSAKYKLNIDEVFNQI 170          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: DJC27_RAT (DnaJ homolog subfamily C member 27 OS=Rattus norvegicus GN=Dnajc27 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.145e-16
Identity = 43/148 (29.05%), Postives = 81/148 (54.73%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSA 689
            KV+ +G++ VGKS ++ R+ +  F  +  +TIG+++    ++V D+ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++          NIV ++  NK D    R +   + + +AE     + ETSA
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQELGPHGNMENIVFVVCANKIDCSKHRCIDESEGRLWAESRGFLYFETSA 165          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: DJC27_BOVIN (DnaJ homolog subfamily C member 27 OS=Bos taurus GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.145e-16
Identity = 44/148 (29.73%), Postives = 81/148 (54.73%), Query Frame = 3
Query:  261 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSA 689
            KV+ +G++ VGKS ++ R+ +  F  +  +TIG+++    ++V D+ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++          NIV  +  NK D    R V   + + +AE +   + ETSA
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGDPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDTWLAEMKQDLGPHGNMENIVFAVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSA 165          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAP1B_CYPCA (Ras-related protein Rap-1b OS=Cyprinus carpio GN=rap1b PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.952e-16
Identity = 55/165 (33.33%), Postives = 89/165 (53.94%), Query Frame = 3
Query:  258 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENT-FFMETSALESLNVENALPEVLTQIYR 746
            +K+V++G  GVGKS L  +F +  F  +   TI   +  + + VD +    +I DTAG E++ A+   Y +   G  LVY +T   TF +++   ++ LR     ++ I+LVGNK DL   R V  E  Q+ A + N+  F+E+SA   +NV     +++ QI R
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPIILVGNKCDLEDERVVGKEQGQNLARQWNSCAFLESSAKSKINVNEIFYDLVRQINR 167          
The following BLAST results are available for this feature:
BLAST of DY258624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAPA_DICDI6.710e-1733.33Ras-related protein rapA OS=Dictyostelium discoide... [more]
RASY_DICDI8.764e-1733.52Ras-like protein rasY OS=Dictyostelium discoideum ... [more]
DJC27_PONAB8.764e-1729.05DnaJ homolog subfamily C member 27 OS=Pongo abelii... [more]
DJC27_MOUSE8.764e-1729.05DnaJ homolog subfamily C member 27 OS=Mus musculus... [more]
DJC27_HUMAN8.764e-1729.05DnaJ homolog subfamily C member 27 OS=Homo sapiens... [more]
RIT1_MOUSE1.145e-1633.74GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 P... [more]
RASU_DICDI1.145e-1629.49Ras-like protein rasU OS=Dictyostelium discoideum ... [more]
DJC27_RAT1.145e-1629.05DnaJ homolog subfamily C member 27 OS=Rattus norve... [more]
DJC27_BOVIN1.145e-1629.73DnaJ homolog subfamily C member 27 OS=Bos taurus G... [more]
RAP1B_CYPCA1.952e-1633.33Ras-related protein Rap-1b OS=Cyprinus carpio GN=r... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258624 ID=DY258624; Name=DY258624; organism=Citrus clementina; type=EST; length=1280bp
CCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAAG
AATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCAC
CTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGCG
TTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAGA
AGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGA
TTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAA
ATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATCC
ACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGT
CGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTA
TCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGAT
GTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCT
TCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGG
CTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTC
GCTGAGAAAGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTT
GAATGTTGAAAATGCCCTCCCCGAAGTGCTCACTCAGATATATCGAGTTG
TTAACAGGGAGGCTCTTGAGGTAAGGGATGACCCACCCACCCTGCCCAAG
GGTCAAATTATTATATTGGTACAAAAGATAATGTATCGGCTGTGAAAAAA
ACTGGGTGCTGCTCCTGCATATCCTGCCACCTTCCAAGGAAAATCCCGGG
GGCTAAAAAAAAGTTTCCCCTCTTTTTAAAAATTTAACTTTCCCTTGGTT
TGGAAAAACTCTTGGGTTTTAACTTGGCTGCCCGGAAAAAAAAAAACATG
GGAGGTGCAGGAAAAAAATTTAAGTTTTTACATTTTTCACTCGGGACCCG
GGAAATCTCCCAAATCCTGGGTTGGAAATATAGGGTAAAAAGCCAAAAAT
CTTTTTGGGAATTGGAAAACCCTCCGGGTTTGGTGGGAAGAACCCCACAC
GGTTTTTTTTTTCTTTTTTTGGTGTATTGTCCCTCTTTTGTTTTGTCCCC
CCCCAAAAAAAAAAAATTGGTGAAAAAAAAGTTGTTTTACCCACCCCCCC
CCCCAAAAAACACCCTCCCCAAAAAGAGAA
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