DY258624

Overview
NameDY258624
Unique NameDY258624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 3.907e-41
Identity = 79/157 (50.32%), Postives = 113/157 (71.97%), Query Frame = 3
Query:  246 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENA 716
            YDYLFK++LIGDSGVGK+ +L RF+++ F+    STIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D+   R VS E  +  A      FMETSA  ++NVENA
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENA 161          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 5.102e-41
Identity = 79/157 (50.32%), Postives = 113/157 (71.97%), Query Frame = 3
Query:  246 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENA 716
            YDYLFK++LIGDSGVGK+ +L RF+++ F+    STIG++F  R+I +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D+   R VS E  +  A      FMETSA  ++NVENA
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENA 161          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 6.664e-41
Identity = 87/174 (50.00%), Postives = 119/174 (68.39%), Query Frame = 3
Query:  243 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNREA 764
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +D KV+K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL E+  +   N+  +LVGNK+DL   + V    A++FA++    F+ETSA  + NVE A    +T    + NR A
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAF---MTMAAEIKNRMA 174          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.137e-40
Identity = 79/163 (48.47%), Postives = 114/163 (69.94%), Query Frame = 3
Query:  243 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEV 728
            +YDYLFK+++IGDSG GKS+LL RF  N +S    STIGV+F  +++++D+  +K QIWDTAGQER+R ITS YYRGA G + VYDVT  ++F+++ E WL+++  +  SN+  +L+GNK DL   R VS ++A+  AE+ N  ++E SA    NVE A   +
Sbjct:    3 EYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTI 165          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.484e-40
Identity = 84/166 (50.60%), Postives = 115/166 (69.28%), Query Frame = 3
Query:  243 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQI 740
            DYDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK+DL   + V    A+ +A++    F+ETSA  + NVE A   +  +I
Sbjct:    7 DYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEI 172          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 2.532e-40
Identity = 83/159 (52.20%), Postives = 114/159 (71.70%), Query Frame = 3
Query:  240 DDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENA 716
            +++DYLFK++LIGDS VGKS  L RF  + +     STIGV+F  R++ V+ K VK QIWDTAGQER+R ITS+YYRGA G ++VYD+T   +F NV++WL E+  + + ++  +LVGNK DL   RAV T  AQ++A++    F+ETSA ES+NVE A
Sbjct:    3 NEFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEA 161          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.532e-40
Identity = 83/169 (49.11%), Postives = 117/169 (69.23%), Query Frame = 3
Query:  237 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTF-FMETSALESLNVENALPEVLTQI 740
            D+ YD+LFK+VL+GD+ VGK+ ++ RF    FS    STIGV+F  +++ +  K VK QIWDTAGQER+R IT +YYR A GA+L YD+T+  +F +V  W++++R +  SNIV +L+GNK+DL  LR VS  +AQS AE  +    +ETSA +S NVE A   V T++
Sbjct:   12 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 3.307e-40
Identity = 87/174 (50.00%), Postives = 116/174 (66.67%), Query Frame = 3
Query:  243 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQIYRVVNREA 764
            +YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R++  D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL E+  +   N+  +LVGNK DL   R VS E  ++ A++    F+ETSA ++ NVE A    +T    + NR A
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAF---MTMAGEIKNRMA 174          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.307e-40
Identity = 84/166 (50.60%), Postives = 113/166 (68.07%), Query Frame = 3
Query:  243 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQI 740
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK DL   + V    A+ FA+     F+ETSA  + NVE A   +  +I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of DY258624 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.307e-40
Identity = 83/166 (50.00%), Postives = 114/166 (68.67%), Query Frame = 3
Query:  243 DYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENALPEVLTQI 740
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV++WL+E+  +   N+  +LVGNK+DL   + V    A+ FA+     F+ETSA  + NVE A   +  +I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEI 169          
The following BLAST results are available for this feature:
BLAST of DY258624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_BOVIN3.907e-4150.32Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB8A_PONAB5.102e-4150.32Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
YPTC1_CHLRE6.664e-4150.00GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RAB1_THEPA1.137e-4048.47Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RAB1A_LYMST1.484e-4050.60Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
YPTM1_MAIZE2.532e-4052.20GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB43_HUMAN2.532e-4049.11Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RIC1_ORYSJ3.307e-4050.00Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB1_DISOM3.307e-4050.60Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB1B_MOUSE3.307e-4050.00Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CG06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258624 ID=DY258624; Name=DY258624; organism=Citrus clementina; type=EST; length=1280bp
CCCTTCTTAATTTGCAATGTTAATAACATTACTCAAACAAGAAGAAGAAG
AATAGCGAAAGCCTTAGATTTTCTTCATCTGTTCCCATCATCAACTTCAC
CTCACCTGTCTTGCACACACACTCACACTTATCTCTCTCTCTCTATTGCG
TTAATTGCATAATACACAATTCAATAAGAGAGGAGGGGAAAAAAAAAAGA
AGAAAGAAATTGAAAAAAATGGGAGCATACAGAGCTGACGACGACTACGA
TTACTTGTTCAAGGTGGTGTTAATTGGAGATTCAGGAGTTGGGAAATCAA
ATCTGTTATCTCGATTCACCAAGAACGAATTCAGCCTCGAATCGAAATCC
ACCATCGGCGTCGAATTCGCCACTCGCAGCATTCGCGTCGACGACAAGGT
CGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAACGATATCGTGCTA
TCACAAGTGCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGAT
GTCACCCGACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCT
TCGGGATCACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGG
CTGATTTGCGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTC
GCTGAGAAAGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTT
GAATGTTGAAAATGCCCTCCCCGAAGTGCTCACTCAGATATATCGAGTTG
TTAACAGGGAGGCTCTTGAGGTAAGGGATGACCCACCCACCCTGCCCAAG
GGTCAAATTATTATATTGGTACAAAAGATAATGTATCGGCTGTGAAAAAA
ACTGGGTGCTGCTCCTGCATATCCTGCCACCTTCCAAGGAAAATCCCGGG
GGCTAAAAAAAAGTTTCCCCTCTTTTTAAAAATTTAACTTTCCCTTGGTT
TGGAAAAACTCTTGGGTTTTAACTTGGCTGCCCGGAAAAAAAAAAACATG
GGAGGTGCAGGAAAAAAATTTAAGTTTTTACATTTTTCACTCGGGACCCG
GGAAATCTCCCAAATCCTGGGTTGGAAATATAGGGTAAAAAGCCAAAAAT
CTTTTTGGGAATTGGAAAACCCTCCGGGTTTGGTGGGAAGAACCCCACAC
GGTTTTTTTTTTCTTTTTTTGGTGTATTGTCCCTCTTTTGTTTTGTCCCC
CCCCAAAAAAAAAAAATTGGTGAAAAAAAAGTTGTTTTACCCACCCCCCC
CCCCAAAAAACACCCTCCCCAAAAAGAGAA
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