DY258638

Overview
NameDY258638
Unique NameDY258638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1147
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1189 contig Ccv1_Contig1189:1..1150. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_BURPS (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia pseudomallei GN=clpP PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 7.259e-44
Identity = 92/168 (54.76%), Postives = 125/168 (74.40%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL++RI+F+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLA+G+KGKRY +PNARVMIHQPLG A G+A+D+ I+ RE+ Y R     ++  +   GQ  E    DTDRDNF  + +A+  G
Sbjct:   42 DIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLL--AHHTGQDVERIARDTDRDNFMSSEDAKAYG 207
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_BURP6 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia pseudomallei (strain 668) GN=clpP PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 7.259e-44
Identity = 92/168 (54.76%), Postives = 125/168 (74.40%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL++RI+F+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLA+G+KGKRY +PNARVMIHQPLG A G+A+D+ I+ RE+ Y R     ++  +   GQ  E    DTDRDNF  + +A+  G
Sbjct:   42 DIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLL--AHHTGQDVERIARDTDRDNFMSSEDAKAYG 207
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_BURP1 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia pseudomallei (strain 1710b) GN=clpP PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 7.259e-44
Identity = 92/168 (54.76%), Postives = 125/168 (74.40%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL++RI+F+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLA+G+KGKRY +PNARVMIHQPLG A G+A+D+ I+ RE+ Y R     ++  +   GQ  E    DTDRDNF  + +A+  G
Sbjct:   32 DIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLL--AHHTGQDVERIARDTDRDNFMSSEDAKAYG 197
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_BURP0 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia pseudomallei (strain 1106a) GN=clpP PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 7.259e-44
Identity = 92/168 (54.76%), Postives = 125/168 (74.40%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL++RI+F+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLA+G+KGKRY +PNARVMIHQPLG A G+A+D+ I+ RE+ Y R     ++  +   GQ  E    DTDRDNF  + +A+  G
Sbjct:   42 DIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLL--AHHTGQDVERIARDTDRDNFMSSEDAKAYG 207
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_BURMS (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia mallei (strain SAVP1) GN=clpP PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 7.259e-44
Identity = 92/168 (54.76%), Postives = 125/168 (74.40%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL++RI+F+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLA+G+KGKRY +PNARVMIHQPLG A G+A+D+ I+ RE+ Y R     ++  +   GQ  E    DTDRDNF  + +A+  G
Sbjct:   42 DIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLL--AHHTGQDVERIARDTDRDNFMSSEDAKAYG 207
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_BURMA (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia mallei GN=clpP PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 7.259e-44
Identity = 92/168 (54.76%), Postives = 125/168 (74.40%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL++RI+F+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLA+G+KGKRY +PNARVMIHQPLG A G+A+D+ I+ RE+ Y R     ++  +   GQ  E    DTDRDNF  + +A+  G
Sbjct:   32 DIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLL--AHHTGQDVERIARDTDRDNFMSSEDAKAYG 197
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_BURM9 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia mallei (strain NCTC 10229) GN=clpP PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 7.259e-44
Identity = 92/168 (54.76%), Postives = 125/168 (74.40%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL++RI+F+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLA+G+KGKRY +PNARVMIHQPLG A G+A+D+ I+ RE+ Y R     ++  +   GQ  E    DTDRDNF  + +A+  G
Sbjct:   42 DIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLL--AHHTGQDVERIARDTDRDNFMSSEDAKAYG 207
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_BURM7 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia mallei (strain NCTC 10247) GN=clpP PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 7.259e-44
Identity = 92/168 (54.76%), Postives = 125/168 (74.40%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL++RI+F+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLA+G+KGKRY +PNARVMIHQPLG A G+A+D+ I+ RE+ Y R     ++  +   GQ  E    DTDRDNF  + +A+  G
Sbjct:   42 DIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLL--AHHTGQDVERIARDTDRDNFMSSEDAKAYG 207
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP1_ANASP (ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena sp. (strain PCC 7120) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 7.259e-44
Identity = 96/168 (57.14%), Postives = 122/168 (72.62%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESG 930
            D  + LLR+RI+FLG QVD   A+ I++QLLFLDAED +KDI L+INSPGGSVTAGMGI+D MK  + DV TIC GLAASMGAFLL+AG+KGKR  +P++R+MIHQPLG A G+ATD+ I+ RE+ Y +    D +  +   GQ  E    DT+RD F    EA++ G
Sbjct:   18 DIYSRLLRERIVFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMIHQPLGGAQGQATDIEIQAREILYHKRRLNDYL--AEHTGQPIERIAEDTERDFFMSPDEAKDYG 183
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_STAES (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpP PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 9.481e-44
Identity = 97/168 (57.74%), Postives = 120/168 (71.43%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL+ RII LGSQ+DD  A+ I+SQLLFL A+DS+KDI L+INSPGGSVTAG  IYD ++  K DV TIC+G+AASMG+FLLAAG+KGKR+ +PNA VMIHQPLG A G+AT++ I    +   R     I+  S + GQ  E    DTDRDNF  A EA+E G
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRIL--SERTGQSIEKIQQDTDRDNFLTAAEAKEYG 184
The following BLAST results are available for this feature:
BLAST of DY258638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_BURPS7.259e-4454.76ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURP67.259e-4454.76ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURP17.259e-4454.76ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURP07.259e-4454.76ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURMS7.259e-4454.76ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURMA7.259e-4454.76ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURM97.259e-4454.76ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURM77.259e-4454.76ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_ANASP7.259e-4457.14ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_STAES9.481e-4457.74ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258638 ID=DY258638; Name=DY258638; organism=Citrus clementina; type=EST; length=1147bp
CTCTAGACTCTAGTTGTATTAAACGACATCGCCTTAAGTGTTGTCGTCGT
AGCAGTAGTACGACATCGTATAACGACAAAGCGAAAGAAAGAACACGATA
TTTTCGACCCTGTTTCTCGTTCTGACATTAAACTTTCTCGAACTGAACCC
ACCCAGCAAACAAATCCAAATAAGAAGATGGAGATGAGTTTGACAGCATC
TTCATTTTCGAAGCCACTCTTCTTCTCAAACCAATCCCTATCGAAAACCC
ACTTTCTCACTGCCGCTAATAACACTAACACTAGCACTACAATCAAAACG
AGGAGACCCACTTGCATAAAGGCCGCGAATAGTTCACCTTCAATAGCACA
GACTTTGTCTACCAACTGGGATGTCTCCAATTTTGCTGTTAATAATAATA
CTTCATCTCCATATCTGCCCAAATTTGAGGAGCTTGACACCACTAACATG
CTTCTCCGTCAGAGAATTATCTTCTTGGGATCCCAGGTTGATGACTTGAC
TGCTGATTTCATCATAAGTCAGCTCTTATTTCTTGACGCCGAAGATTCTA
AAAAAGATATCAGGTTGTTTATTAATTCACCTGGTGGCTCTGTTACTGCT
GGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCTGATGTTTCAAC
TATTTGCTTGGGGCTTGCTGCATCTATGGGTGCATTCCTGCTAGCAGCTG
GTTCAAAAGGGAAGAGATATTGCATGCCTAATGCAAGAGTAATGATCCAT
CAACCTCTTGGGACTGCTGGAGGCAAAGCAACAGATATGAGCATACGGAT
TAGAGAGATGTCTTACCCCAGGTTAAGCTGAACAGATATTATCTAAAGCT
CCCGGAAAGCCGGGCAGCAAAATGAGCTGGACACTGACCGTGATAATTTC
TGGGATGCTTGGGAAGCAAGGGAATCCGGTTGGGGGATGGCGTCCTTCAT
GAGGGCAAGCCGGGATTATTTGCCCCTACTTTGGAAACAATCCCTCCACC
CAACACTTCGGTGGGGGCCCAGGGGGAAAATTGAAAGGGAGACGGGAAAA
CAAAAAAAAAATTTGGCCCCCAAAACATAATTCTGTTTGGAAAAAGGGAA
AATATGGAAGGGTTCAGGGGGGGGGGGGAAAGGAAAAAAAGGGCCCT
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