DY258638

Overview
NameDY258638
Unique NameDY258638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1147
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_STAA9 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain JH9) GN=clpP PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 9.481e-44
Identity = 97/168 (57.74%), Postives = 120/168 (71.43%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL+ RII LGSQ+DD  A+ I+SQLLFL A+DS+KDI L+INSPGGSVTAG  IYD ++  K DV TIC+G+AASMG+FLLAAG+KGKR+ +PNA VMIHQPLG A G+AT++ I    +   R     I+  S + GQ  E    DTDRDNF  A EA+E G
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRIL--SERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_STAA8 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain NCTC 8325) GN=clpP PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 9.481e-44
Identity = 97/168 (57.74%), Postives = 120/168 (71.43%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL+ RII LGSQ+DD  A+ I+SQLLFL A+DS+KDI L+INSPGGSVTAG  IYD ++  K DV TIC+G+AASMG+FLLAAG+KGKR+ +PNA VMIHQPLG A G+AT++ I    +   R     I+  S + GQ  E    DTDRDNF  A EA+E G
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRIL--SERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_STAA3 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain USA300) GN=clpP PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 9.481e-44
Identity = 97/168 (57.74%), Postives = 120/168 (71.43%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL+ RII LGSQ+DD  A+ I+SQLLFL A+DS+KDI L+INSPGGSVTAG  IYD ++  K DV TIC+G+AASMG+FLLAAG+KGKR+ +PNA VMIHQPLG A G+AT++ I    +   R     I+  S + GQ  E    DTDRDNF  A EA+E G
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRIL--SERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_STAA2 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain JH1) GN=clpP PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 9.481e-44
Identity = 97/168 (57.74%), Postives = 120/168 (71.43%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL+ RII LGSQ+DD  A+ I+SQLLFL A+DS+KDI L+INSPGGSVTAG  IYD ++  K DV TIC+G+AASMG+FLLAAG+KGKR+ +PNA VMIHQPLG A G+AT++ I    +   R     I+  S + GQ  E    DTDRDNF  A EA+E G
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRIL--SERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_STAA1 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=clpP PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 9.481e-44
Identity = 97/168 (57.74%), Postives = 120/168 (71.43%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL+ RII LGSQ+DD  A+ I+SQLLFL A+DS+KDI L+INSPGGSVTAG  IYD ++  K DV TIC+G+AASMG+FLLAAG+KGKR+ +PNA VMIHQPLG A G+AT++ I    +   R     I+  S + GQ  E    DTDRDNF  A EA+E G
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRIL--SERTGQSIEKIQKDTDRDNFLTAEEAKEYG 184
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_CLONN (ATP-dependent Clp protease proteolytic subunit OS=Clostridium novyi (strain NT) GN=clpP PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 9.481e-44
Identity = 92/168 (54.76%), Postives = 121/168 (72.02%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESG 930
            D  + LL+ RIIFLG +V+D+TA  +++QLLFL+AED  KDI L+INSPGGS+TAGM IYD M+  K DVSTIC+G+AASMGAFLL AG+KGKR+ +PN+ +MIHQPLG   G+ATD+ I    +   +     I+  S + GQ  E+   D +RDNF +A EA+E G
Sbjct:   19 DIYSRLLKDRIIFLGEEVNDVTASLVVAQLLFLEAEDPDKDIYLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGIHANRILKIKDKLNSIL--SERTGQPLEVIKKDVERDNFMEAEEAKEYG 184
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP1_BACLD (ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 9.481e-44
Identity = 96/168 (57.14%), Postives = 120/168 (71.43%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESG 930
            D  + LL+ RII LGS +DD  A+ I+SQLLFL+AED +KDI ++INSPGGS+TAGM IYD M+  K  VSTIC G+AASMGAFLLAAG KGKRY +PN+ VMIHQPLG A G+AT++ I  + +   R     I+  + + GQ  E+   DTDRDNF  A EA+E G
Sbjct:   19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDTMQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNKIL--AERTGQPLEVIERDTDRDNFKTAEEAKEYG 184
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_CLOTE (ATP-dependent Clp protease proteolytic subunit OS=Clostridium tetani GN=clpP PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.617e-43
Identity = 93/168 (55.36%), Postives = 122/168 (72.62%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESG 930
            D  + LL+ RII L  QV+D+TA  I++QLLFL+AED  KDI L+INSPGGS+T+GM IYD M+  K DVSTIC+G+AASMGAFLLAAG+KGKR+ +PN+ +MIHQPLG   G+ATD+ I    +   + +   I+  S K GQ  E+   DT+RDNF DA +A++ G
Sbjct:   19 DIYSRLLKDRIIMLSDQVNDVTASLIVAQLLFLEAEDPDKDIFLYINSPGGSITSGMAIYDTMQYIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGIHADRILKIKQNLNSIL--SEKTGQPLEVIQRDTERDNFMDANQAKDYG 184
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_CLOBL (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=clpP PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.617e-43
Identity = 94/166 (56.63%), Postives = 120/166 (72.29%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRI-REMSYPRLS*TDII*SSRKAGQQNELDTDRDNFWDAWEARESG 930
            D  + LL+ RII L  +V+D TA  I++QLLFL+AED  KDI L+INSPGGS+T+GM IYD M+  K DVSTIC+G+AASMGAFLLAAG+KGKRY +PN+ VMIHQPLG   G+ATD+ I   R +   +   T +   + K  +Q ELDT+RD+F  A EA+E G
Sbjct:   19 DIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEVMIHQPLGGFRGQATDIGIHAERILKMKKKLNTILSDRTGKPLEQVELDTERDHFLSAEEAKEYG 184
[Close]
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_CLOBK (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Okra / Type B1) GN=clpP PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.617e-43
Identity = 94/166 (56.63%), Postives = 120/166 (72.29%), Query Frame = 1 
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRI-REMSYPRLS*TDII*SSRKAGQQNELDTDRDNFWDAWEARESG 930
            D  + LL+ RII L  +V+D TA  I++QLLFL+AED  KDI L+INSPGGS+T+GM IYD M+  K DVSTIC+G+AASMGAFLLAAG+KGKRY +PN+ VMIHQPLG   G+ATD+ I   R +   +   T +   + K  +Q ELDT+RD+F  A EA+E G
Sbjct:   19 DIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRYALPNSEVMIHQPLGGFRGQATDIGIHAERILKMKKKLNTILSDRTGKPLEQVELDTERDHFLSAEEAKEYG 184
The following BLAST results are available for this feature:
BLAST of DY258638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_STAA99.481e-4457.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA89.481e-4457.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA39.481e-4457.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA29.481e-4457.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA19.481e-4457.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLONN9.481e-4454.76ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_BACLD9.481e-4457.14ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_CLOTE1.617e-4355.36ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOBL1.617e-4356.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOBK1.617e-4356.63ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258638 ID=DY258638; Name=DY258638; organism=Citrus clementina; type=EST; length=1147bp
CTCTAGACTCTAGTTGTATTAAACGACATCGCCTTAAGTGTTGTCGTCGT
AGCAGTAGTACGACATCGTATAACGACAAAGCGAAAGAAAGAACACGATA
TTTTCGACCCTGTTTCTCGTTCTGACATTAAACTTTCTCGAACTGAACCC
ACCCAGCAAACAAATCCAAATAAGAAGATGGAGATGAGTTTGACAGCATC
TTCATTTTCGAAGCCACTCTTCTTCTCAAACCAATCCCTATCGAAAACCC
ACTTTCTCACTGCCGCTAATAACACTAACACTAGCACTACAATCAAAACG
AGGAGACCCACTTGCATAAAGGCCGCGAATAGTTCACCTTCAATAGCACA
GACTTTGTCTACCAACTGGGATGTCTCCAATTTTGCTGTTAATAATAATA
CTTCATCTCCATATCTGCCCAAATTTGAGGAGCTTGACACCACTAACATG
CTTCTCCGTCAGAGAATTATCTTCTTGGGATCCCAGGTTGATGACTTGAC
TGCTGATTTCATCATAAGTCAGCTCTTATTTCTTGACGCCGAAGATTCTA
AAAAAGATATCAGGTTGTTTATTAATTCACCTGGTGGCTCTGTTACTGCT
GGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCTGATGTTTCAAC
TATTTGCTTGGGGCTTGCTGCATCTATGGGTGCATTCCTGCTAGCAGCTG
GTTCAAAAGGGAAGAGATATTGCATGCCTAATGCAAGAGTAATGATCCAT
CAACCTCTTGGGACTGCTGGAGGCAAAGCAACAGATATGAGCATACGGAT
TAGAGAGATGTCTTACCCCAGGTTAAGCTGAACAGATATTATCTAAAGCT
CCCGGAAAGCCGGGCAGCAAAATGAGCTGGACACTGACCGTGATAATTTC
TGGGATGCTTGGGAAGCAAGGGAATCCGGTTGGGGGATGGCGTCCTTCAT
GAGGGCAAGCCGGGATTATTTGCCCCTACTTTGGAAACAATCCCTCCACC
CAACACTTCGGTGGGGGCCCAGGGGGAAAATTGAAAGGGAGACGGGAAAA
CAAAAAAAAAATTTGGCCCCCAAAACATAATTCTGTTTGGAAAAAGGGAA
AATATGGAAGGGTTCAGGGGGGGGGGGGAAAGGAAAAAAAGGGCCCT
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