DY258638

Overview
NameDY258638
Unique NameDY258638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1147
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_BUCAI (ATP-dependent Clp protease proteolytic subunit OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=clpP PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.621e-35
Identity = 87/204 (42.65%), Postives = 131/204 (64.22%), Query Frame = 1
Query:  391 NNNTSS--PYLPKFEE--------LDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQ---QNELDTDRDNFWDAWEARESGWGMASFMRASR 963
            NN TSS   ++P   E         D  + LL++RIIF+   ++D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +T+GM IYD M+  K ++STICLG A SM A LL +G+KGKR+C+PN++VMIHQPLG   G+A+D++I  RE+   +     ++  S   GQ   +   DT+RD F  A ++ +  +G+  F+ + R
Sbjct:    8 NNKTSSYATFIPMVVEQHSRGERSYDIYSRLLKERIIFITGAIEDNMANNIVAQILFLEAENPEKDIFLYINSPGGIITSGMSIYDTMQFVKPEISTICLGQACSMAALLLTSGAKGKRFCLPNSKVMIHQPLGGYQGQASDIAIHAREIMEMKKKLNKLM--SFHTGQSIKKINKDTERDCFLSANQSIK--YGLIDFILSQR 207          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP3_STRCO (ATP-dependent Clp protease proteolytic subunit 3 OS=Streptomyces coelicolor GN=clpP3 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.621e-35
Identity = 83/183 (45.36%), Postives = 115/183 (62.84%), Query Frame = 1
Query:  418 PKFEELDT---------TNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESG 930
            P+ EE DT            LL QRI+ LG+QVD+++A+ + +QLL L A+D + DI L++NSPGGSV AG+ IYD M+L   DVST+ +G AASMG FLL+ G+ GKRY +PNAR+M+HQP    GG   D+ I+   + + + +   I  ++   GQ  E    D DRD ++ A EARE G
Sbjct:   14 PRAEEGDTPATRFDDRLAEQLLDQRIVLLGTQVDEVSANRVCAQLLILSAQDPRTDISLYVNSPGGSVHAGLAIYDTMRLIPNDVSTLAMGFAASMGQFLLSVGTAGKRYALPNARIMMHQPSAGIGGTTADIEIQADNLDFTKRTIERI--TAEHTGQSPETISRDGDRDRWFTAEEAREYG 194          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP2_AGRT5 (ATP-dependent Clp protease proteolytic subunit 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.621e-35
Identity = 81/177 (45.76%), Postives = 117/177 (66.10%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDI-I*SSRKAGQQNELDTDRDNFWDAWEARESGWGMASFMRASR 963
            D  + LL++RIIFL   V+D  A  + +QLLFL+AE+ KK+I L+INSPGG VTAGM IYD M+  +  VST+C+G AASMG+ LLAAG KG R+  PNAR+M+HQP G   G+A+D+    R++   +    ++ +  + +  ++ E   DRD+F DA EA++  WG+   +  SR
Sbjct:   27 DIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEAENPKKEIALYINSPGGVVTAGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRFATPNARIMVHQPSGGFQGQASDIERHARDIIKMKRRLNEVYVKHTGRTLEEVEKTLDRDHFMDADEAKD--WGVIDKILTSR 201          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP1_STRCO (ATP-dependent Clp protease proteolytic subunit 1 OS=Streptomyces coelicolor GN=clpP1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.117e-35
Identity = 84/165 (50.91%), Postives = 111/165 (67.27%), Query Frame = 1
Query:  445 NMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQ---QNELDTDRDNFWDAWEARESG 930
            N LL +RIIFLG  VDD  A+ I +QLL L A D  KDI L+INSPGGS+TAGM IYD M+  K DV TI +GLAASMG FLL+AG+ GKR+ +PNA ++IHQP     G A+D+ I    + + +    ++  +S+  GQ   Q   D+DRD ++DA+EA+E G
Sbjct:   38 NRLLGERIIFLGQPVDDDIANKITAQLLLL-ASDPDKDIFLYINSPGGSITAGMAIYDTMQYIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKRRMAEL--TSQHTGQTIEQITRDSDRDRWFDAFEAKEYG 199          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_THEYD (ATP-dependent Clp protease proteolytic subunit OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=clpP PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.765e-35
Identity = 78/168 (46.43%), Postives = 116/168 (69.05%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL+ RIIF+G++++D  A+ +I+QLLFL  ED +KDI ++INSPGG V++G+ IYD M+  K D++T C+G A+SM   LLAAG+KGKR+ +P++RVMIHQP+G   G+ATD+ I  +E+   +    +I+  ++  GQ  E    DT+RD F  A EA+  G
Sbjct:   19 DIYSRLLKDRIIFIGTEINDHVANVVIAQLLFLQTEDPEKDIHIYINSPGGMVSSGLAIYDTMQYVKPDIATYCIGQASSMACVLLAAGTKGKRFALPHSRVMIHQPIGGFYGQATDVEIHAKEILKMKDLLNNIL--AKHTGQPIEKIQKDTERDFFMSAEEAKLYG 184          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_RICRS (ATP-dependent Clp protease proteolytic subunit OS=Rickettsia rickettsii (strain Sheila Smith) GN=clpP PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.765e-35
Identity = 84/185 (45.41%), Postives = 120/185 (64.86%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIRE-MSYPRLS*TDII*SSRKAGQQNELDTDRDNFWDAWEARESGWGMASFMRASRDYLPLLWK 987
            D  + LL++RIIF+ S V+D  A+ I++QLLFL+AE+ KKDI ++INSPGG VTAG+ IYD M+  K  V+T+C+G A SMG+ LL  G KG RY +P++R+MIHQP G   G+ATD+ I  +E +   RL        + +  Q  E   +RDNF    EA++  +G+   + +SRD + LL K
Sbjct:   19 DIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELYSKHTEQELQHIEKSMERDNFMSPEEAKK--FGLVDNIISSRDVMALLAK 201          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP2_MYCPA (ATP-dependent Clp protease proteolytic subunit 2 OS=Mycobacterium paratuberculosis GN=clpP2 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.765e-35
Identity = 80/164 (48.78%), Postives = 113/164 (68.90%), Query Frame = 1
Query:  451 LLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQ---QNELDTDRDNFWDAWEARESGW 933
            LL +RIIFLGS+V+D  A+ + +Q+L L AED  KDI L+INSPGGS++AGM IYD M L   D++T  +G+AASMG FLLAAG+KGKRY +P+AR+++HQPLG   G A D++I+  +    +     +  ++   GQ   + E D+DRD ++ A EA E G+
Sbjct:   21 LLSERIIFLGSEVNDDVANRLCAQILLLAAEDPTKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFHVIKKEMFRL--NAEFTGQSIERIEADSDRDRWFTAQEALEYGF 182          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_LACS1 (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=clpP PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.611e-35
Identity = 81/168 (48.21%), Postives = 113/168 (67.26%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESG 930
            D  + LL+ RII +  +V+D  A+ II+QLLFLDA+DS+KDI ++INSPGGSV+AG+ IYD M    ADV TI +G+AASM + L  AG+KGKR+ +PN+ +MIHQPLG A G++T++ I    +   R     I+  +  +GQ  E    DT+RDNF  A +A + G
Sbjct:   19 DIYSRLLKDRIIMVSGEVNDDMANAIIAQLLFLDAQDSEKDIYMYINSPGGSVSAGLAIYDTMNFVNADVQTIVMGMAASMASVLATAGTKGKRFALPNSEIMIHQPLGGAQGQSTEIQIAAEHILKTRKLINQIL--ADGSGQDIETINKDTERDNFMTAQQAVDYG 184          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMM (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.611e-35
Identity = 85/171 (49.71%), Postives = 118/171 (69.01%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESGWGM 939
            D  + LLR+RIIFLG  V   +A+ I++Q+LFL+AED +KDI L+INSPGGSV  G+GI+D M+  K DV T+C+GLAASMGAFLL AG+ GKR  + ++R+MIHQPLG A G+A+D+ I+  E+ + +     ++  + + GQ  E    DTDRD F    EA   G+G+
Sbjct:   17 DIYSRLLRERIIFLGEPVTSDSANRIVAQMLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVQTVCVGLAASMGAFLLCAGAMGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKDRLNRVL--ADRTGQPLERIQEDTDRDFFMSPAEA--VGYGL 183          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP2_PARUW (ATP-dependent Clp protease proteolytic subunit 2 OS=Protochlamydia amoebophila (strain UWE25) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.611e-35
Identity = 72/167 (43.11%), Postives = 116/167 (69.46%), Query Frame = 1
Query:  433 LDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII-*SSRKAGQQNELDTDRDNFWDAWEARESG 930
            +D  + LL+ RIIF+G+++ D  A+ +++QLLFL  ED KKD+ ++INS GG +T+G+ IYD M+    D++T C+G AASMGA LL AG+KGKR+ +PN+R+MIHQP G  GG + D++++ +E+   +     I+  S+R+  ++   D++RD +  A EA++ G
Sbjct:   28 MDIYSRLLKDRIIFIGTEITDQVANVVVAQLLFLKMEDPKKDVHIYINSLGGYITSGLAIYDTMQYLGCDINTYCIGQAASMGALLLTAGTKGKRFALPNSRIMIHQPYGGVGGTSADVALQAKEILELKKRLNHIMADSTRQPLEKIAADSERDFYMSAVEAKDYG 194          
The following BLAST results are available for this feature:
BLAST of DY258638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_BUCAI1.621e-3542.65ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_STRCO1.621e-3545.36ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_AGRT51.621e-3545.76ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_STRCO2.117e-3550.91ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_THEYD2.765e-3546.43ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RICRS2.765e-3545.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_MYCPA2.765e-3548.78ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_LACS13.611e-3548.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_PROMM3.611e-3549.71ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_PARUW3.611e-3543.11ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258638 ID=DY258638; Name=DY258638; organism=Citrus clementina; type=EST; length=1147bp
CTCTAGACTCTAGTTGTATTAAACGACATCGCCTTAAGTGTTGTCGTCGT
AGCAGTAGTACGACATCGTATAACGACAAAGCGAAAGAAAGAACACGATA
TTTTCGACCCTGTTTCTCGTTCTGACATTAAACTTTCTCGAACTGAACCC
ACCCAGCAAACAAATCCAAATAAGAAGATGGAGATGAGTTTGACAGCATC
TTCATTTTCGAAGCCACTCTTCTTCTCAAACCAATCCCTATCGAAAACCC
ACTTTCTCACTGCCGCTAATAACACTAACACTAGCACTACAATCAAAACG
AGGAGACCCACTTGCATAAAGGCCGCGAATAGTTCACCTTCAATAGCACA
GACTTTGTCTACCAACTGGGATGTCTCCAATTTTGCTGTTAATAATAATA
CTTCATCTCCATATCTGCCCAAATTTGAGGAGCTTGACACCACTAACATG
CTTCTCCGTCAGAGAATTATCTTCTTGGGATCCCAGGTTGATGACTTGAC
TGCTGATTTCATCATAAGTCAGCTCTTATTTCTTGACGCCGAAGATTCTA
AAAAAGATATCAGGTTGTTTATTAATTCACCTGGTGGCTCTGTTACTGCT
GGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCTGATGTTTCAAC
TATTTGCTTGGGGCTTGCTGCATCTATGGGTGCATTCCTGCTAGCAGCTG
GTTCAAAAGGGAAGAGATATTGCATGCCTAATGCAAGAGTAATGATCCAT
CAACCTCTTGGGACTGCTGGAGGCAAAGCAACAGATATGAGCATACGGAT
TAGAGAGATGTCTTACCCCAGGTTAAGCTGAACAGATATTATCTAAAGCT
CCCGGAAAGCCGGGCAGCAAAATGAGCTGGACACTGACCGTGATAATTTC
TGGGATGCTTGGGAAGCAAGGGAATCCGGTTGGGGGATGGCGTCCTTCAT
GAGGGCAAGCCGGGATTATTTGCCCCTACTTTGGAAACAATCCCTCCACC
CAACACTTCGGTGGGGGCCCAGGGGGAAAATTGAAAGGGAGACGGGAAAA
CAAAAAAAAAATTTGGCCCCCAAAACATAATTCTGTTTGGAAAAAGGGAA
AATATGGAAGGGTTCAGGGGGGGGGGGGAAAGGAAAAAAAGGGCCCT
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