DY258638

Overview
NameDY258638
Unique NameDY258638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1147
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_LACBA (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=clpP PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.057e-34
Identity = 81/168 (48.21%), Postives = 113/168 (67.26%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL+ RII L   ++D  A+ II+QLLFLDA+DS KDI L+INSPGG V++G+ IYD M   ++DV TI LG+AASM + L ++G+KGKR+ +P+A+VMIHQP G A G+ T++ I  RE+   R     I+  +  +GQ  E    DT+RDN+  A EA + G
Sbjct:   19 DIYSRLLKDRIIMLSGPIEDDMANAIIAQLLFLDAQDSTKDISLYINSPGGVVSSGLAIYDTMNFIQSDVQTITLGMAASMASVLASSGTKGKRFALPHAQVMIHQPSGGAQGQQTEIEIAAREILKTRELINKIL--AENSGQPIERLNQDTERDNYLSAQEAVDYG 184          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_AZOBR (ATP-dependent Clp protease proteolytic subunit OS=Azospirillum brasilense GN=clpP PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.057e-34
Identity = 83/170 (48.82%), Postives = 112/170 (65.88%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNELDT-----DRDNFWDAWEARESG 930
            D  + LL++RIIFL   V+D  A  I SQLLFL++E+  KDI L+INSPGG V+AG+ IYD M+  +  VST+C+G AASMG+ LLAAG+ GKR+ +PN+R+MIHQP G A G+A+D+ I+ +E+   R    DI    +  GQ   LDT     +RD F    EA+  G
Sbjct:   27 DIYSRLLKERIIFLIGGVNDAVASLICSQLLFLESENPSKDIALYINSPGGYVSAGLAIYDTMQYIRPQVSTVCMGQAASMGSLLLAAGAPGKRFSLPNSRIMIHQPSGGAQGQASDIEIQAQEILKLRSRLNDIY--VKHTGQ--SLDTIEAXMERDKFMSPEEAKAFG 192          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP2_RHIL3 (ATP-dependent Clp protease proteolytic subunit 2 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.057e-34
Identity = 80/177 (45.20%), Postives = 115/177 (64.97%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDI-I*SSRKAGQQNELDTDRDNFWDAWEARESGWGMASFMRASR 963
            D  + LL++RIIFL   V+D  A  + +QLLFL+AE+ KK+I L+INSPGG VTAGM IYD M+  K  VST+C+G AASMG+ LLAAG K  R+  PN+R+M+HQP G   G+A+D+    R++   +    ++ +  + +  ++ E   DRD+F DA EA+   WG+   +  SR
Sbjct:   19 DIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRIMVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKTLDRDHFMDADEAQ--SWGVIDKVLTSR 193          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_WOLTR (ATP-dependent Clp protease proteolytic subunit OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.993e-34
Identity = 82/176 (46.59%), Postives = 110/176 (62.50%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNELDT-----------DRDNFWDAWEARESG 930
            D  + L+++RIIF+   V+D  A  I++QLLFL++E+  KDI ++INSPGG VTAG+ IYD M+  K DVST+C+G AASMG+ LLAAG++GKRY +P++R+MIHQP G   G+ATD+ I   E          I+   RK  Q  E  T           +RD F D  EAR  G
Sbjct:   19 DIYSRLVKERIIFVTGPVEDNMASVIVAQLLFLESENPDKDIYMYINSPGGVVTAGLSIYDTMQYIKPDVSTLCIGQAASMGSLLLAAGTEGKRYSLPHSRIMIHQPSGGYQGQATDIEIHANE----------ILRVKRKLNQIYEKHTGNSLKKIEGMMERDKFMDPEEARRIG 184          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP2_CORJK (ATP-dependent Clp protease proteolytic subunit 2 OS=Corynebacterium jeikeium (strain K411) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.993e-34
Identity = 81/170 (47.65%), Postives = 112/170 (65.88%), Query Frame = 1
Query:  427 EELDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQP-LGTAGGKATDMSIRIREMSYPR-LS*TDII*SSRKAGQQNELDTDRDNFWDAWEARESG 930
            +E +  N L  +RIIFLG+QVDD +A+ I++QLL L+  D  +DI ++INSPGGS T+ M IYD M+  + DV T+CLG AAS  A LLAAG+ GKR  +PNARV+IHQP  G   G+ +D+ I+ +E+   R L    +   + K+ +Q  +DTDRD    A EA+E G
Sbjct:   25 KESNPYNKLFEERIIFLGTQVDDASANDIMAQLLVLEGLDPDRDITMYINSPGGSFTSLMAIYDTMQYVRPDVQTVCLGQAASAAAVLLAAGTPGKRAALPNARVLIHQPATGGVQGQVSDLEIQAKEIERMRKLMEETLARHTGKSAEQVRIDTDRDKILTAEEAKEYG 194          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_RHORT (ATP-dependent Clp protease proteolytic subunit OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.214e-34
Identity = 81/166 (48.80%), Postives = 107/166 (64.46%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDI-I*SSRKAGQQNELDTDRDNFWDAWEARESG 930
            D  + LL++RIIFL  QV D  A  I +QLLFL++E+  KDI  +INSPGG VT+GM IYD M+  ++ VST+C+G AASMG+ LL AG  GKRY  PNAR+MIHQP G   G+A D+ I+ RE+   R     I +  + +  +  E   DRDN+  A E+R  G
Sbjct:   30 DIYSRLLKERIIFLTGQVHDGVASLICAQLLFLESENPSKDISFYINSPGGVVTSGMAIYDTMQYIRSPVSTVCIGQAASMGSLLLCAGEAGKRYATPNARIMIHQPSGGFQGQAADIEIQAREILALRERLNRIYVKHTGQPLETIERAMDRDNYMTAEESRAFG 195          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_METEP (ATP-dependent Clp protease proteolytic subunit OS=Methylobacterium extorquens (strain PA1) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.214e-34
Identity = 79/168 (47.02%), Postives = 110/168 (65.48%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESG 930
            D  + LLR+RIIFL   V+D  A  I++QLLFL+AE+ KK+I  +INSPGG VT+G+ IYD M+  +  V+T+C+G AASMG+ LLAAG  G R+ +PNAR+M+HQP G   G+ATD+ I  RE+   +    +I    +  G++ E      +RDNF  A  A+E G
Sbjct:   28 DIYSRLLRERIIFLTGPVEDQGASLIVAQLLFLEAENPKKEISFYINSPGGVVTSGLSIYDTMQFIRCPVTTLCVGQAASMGSLLLAAGEAGHRFALPNARIMVHQPSGGFQGQATDILIHAREIEALKKRLNEIY--VKHTGREYETIHQALERDNFMTADAAKEFG 193          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_METC4 (ATP-dependent Clp protease proteolytic subunit OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.214e-34
Identity = 79/168 (47.02%), Postives = 110/168 (65.48%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESG 930
            D  + LLR+RIIFL   V+D  A  I++QLLFL+AE+ KK+I  +INSPGG VT+G+ IYD M+  +  V+T+C+G AASMG+ LLAAG  G R+ +PNAR+M+HQP G   G+ATD+ I  RE+   +    +I    +  G++ E      +RDNF  A  A+E G
Sbjct:   28 DIYSRLLRERIIFLTGPVEDQGASLIVAQLLFLEAENPKKEISFYINSPGGVVTSGLSIYDTMQFIRCPVTTLCVGQAASMGSLLLAAGEAGHRFALPNARIMVHQPSGGFQGQATDILIHAREIEALKKRLNEIY--VKHTGREYETIHQALERDNFMTADAAKEFG 193          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP3_FRASC (ATP-dependent Clp protease proteolytic subunit 3 OS=Frankia sp. (strain CcI3) GN=clpP3 PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 5.214e-34
Identity = 74/167 (44.31%), Postives = 114/167 (68.26%), Query Frame = 1
Query:  433 LDTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPR-LS*TDII*SSRKAGQQNELDTDRDNFWDAWEARESG 930
            +D  + LL++RI+FLG Q+DD++A+ +++QLLFL++ED  +DI ++INSPGGS T+   IYD M+  + D+STIC+G AAS  A LLAAG+ GKR+ + N+R++IHQP     G+++D+ I+ RE+   R L  T +   + +   +   DT+RD  + A EA E G
Sbjct:   27 MDPYSKLLKERIVFLGVQIDDVSANDVMAQLLFLESEDPDRDISIYINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAASAAAVLLAAGTPGKRFALENSRILIHQPSAQGEGQSSDIEIQAREILRVRALQETMLARHTGRTETEIRRDTERDKIFSADEAEEYG 193          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_STRP7 (ATP-dependent Clp protease proteolytic subunit OS=Streptococcus pneumoniae (strain 70585) GN=clpP PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 6.810e-34
Identity = 80/171 (46.78%), Postives = 111/171 (64.91%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGG--KATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESGW 933
            D  + LL+ RII L   V+D  A+ +I+QLLFLDA+DS KDI L++N+PGGSV+AG+ I D M   KADV TI +G+AASMG  + ++G+KGKR+ +PNA  MIHQP+G  GG  + TDM+I    +   R +   I+  +  +GQ  E    D +RDN+  A E  E G+
Sbjct:   17 DIYSRLLKDRIIMLTGPVEDSMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKIL--AENSGQSMEKVHADAERDNWMSAQETLEYGF 185          
The following BLAST results are available for this feature:
BLAST of DY258638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_LACBA3.057e-3448.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AZOBR3.057e-3448.82ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_RHIL33.057e-3445.20ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_WOLTR3.993e-3446.59ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_CORJK3.993e-3447.65ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_RHORT5.214e-3448.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_METEP5.214e-3447.02ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_METC45.214e-3447.02ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_FRASC5.214e-3444.31ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP_STRP76.810e-3446.78ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258638 ID=DY258638; Name=DY258638; organism=Citrus clementina; type=EST; length=1147bp
CTCTAGACTCTAGTTGTATTAAACGACATCGCCTTAAGTGTTGTCGTCGT
AGCAGTAGTACGACATCGTATAACGACAAAGCGAAAGAAAGAACACGATA
TTTTCGACCCTGTTTCTCGTTCTGACATTAAACTTTCTCGAACTGAACCC
ACCCAGCAAACAAATCCAAATAAGAAGATGGAGATGAGTTTGACAGCATC
TTCATTTTCGAAGCCACTCTTCTTCTCAAACCAATCCCTATCGAAAACCC
ACTTTCTCACTGCCGCTAATAACACTAACACTAGCACTACAATCAAAACG
AGGAGACCCACTTGCATAAAGGCCGCGAATAGTTCACCTTCAATAGCACA
GACTTTGTCTACCAACTGGGATGTCTCCAATTTTGCTGTTAATAATAATA
CTTCATCTCCATATCTGCCCAAATTTGAGGAGCTTGACACCACTAACATG
CTTCTCCGTCAGAGAATTATCTTCTTGGGATCCCAGGTTGATGACTTGAC
TGCTGATTTCATCATAAGTCAGCTCTTATTTCTTGACGCCGAAGATTCTA
AAAAAGATATCAGGTTGTTTATTAATTCACCTGGTGGCTCTGTTACTGCT
GGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCTGATGTTTCAAC
TATTTGCTTGGGGCTTGCTGCATCTATGGGTGCATTCCTGCTAGCAGCTG
GTTCAAAAGGGAAGAGATATTGCATGCCTAATGCAAGAGTAATGATCCAT
CAACCTCTTGGGACTGCTGGAGGCAAAGCAACAGATATGAGCATACGGAT
TAGAGAGATGTCTTACCCCAGGTTAAGCTGAACAGATATTATCTAAAGCT
CCCGGAAAGCCGGGCAGCAAAATGAGCTGGACACTGACCGTGATAATTTC
TGGGATGCTTGGGAAGCAAGGGAATCCGGTTGGGGGATGGCGTCCTTCAT
GAGGGCAAGCCGGGATTATTTGCCCCTACTTTGGAAACAATCCCTCCACC
CAACACTTCGGTGGGGGCCCAGGGGGAAAATTGAAAGGGAGACGGGAAAA
CAAAAAAAAAATTTGGCCCCCAAAACATAATTCTGTTTGGAAAAAGGGAA
AATATGGAAGGGTTCAGGGGGGGGGGGGAAAGGAAAAAAAGGGCCCT
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