DY258638

Overview
NameDY258638
Unique NameDY258638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1147
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1189 contig Ccv1_Contig1189:1..1150. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_STRPS (ATP-dependent Clp protease proteolytic subunit OS=Streptococcus pneumoniae (strain CGSP14) GN=clpP PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 8.894e-34
Identity = 80/171 (46.78%), Postives = 111/171 (64.91%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGG--KATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESGW 933
            D  + LL+ RII L   V+D  A+ +I+QLLFLDA+DS KDI L++N+PGGSV+AG+ I D M   KADV TI +G+AASMG  + ++G+KGKR+ +PNA  MIHQP+G  GG  + TDM+I    +   R +   I+  +  +GQ  E    D +RDN+  A E  E G+
Sbjct:   17 DIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKIL--AENSGQSMEKVHADAERDNWMSAQETLEYGF 185          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_STRPN (ATP-dependent Clp protease proteolytic subunit OS=Streptococcus pneumoniae GN=clpP PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 8.894e-34
Identity = 80/171 (46.78%), Postives = 111/171 (64.91%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGG--KATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESGW 933
            D  + LL+ RII L   V+D  A+ +I+QLLFLDA+DS KDI L++N+PGGSV+AG+ I D M   KADV TI +G+AASMG  + ++G+KGKR+ +PNA  MIHQP+G  GG  + TDM+I    +   R +   I+  +  +GQ  E    D +RDN+  A E  E G+
Sbjct:   17 DIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKIL--AENSGQSMEKVHADAERDNWMSAQETLEYGF 185          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_STRPJ (ATP-dependent Clp protease proteolytic subunit OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 8.894e-34
Identity = 80/171 (46.78%), Postives = 111/171 (64.91%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGG--KATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESGW 933
            D  + LL+ RII L   V+D  A+ +I+QLLFLDA+DS KDI L++N+PGGSV+AG+ I D M   KADV TI +G+AASMG  + ++G+KGKR+ +PNA  MIHQP+G  GG  + TDM+I    +   R +   I+  +  +GQ  E    D +RDN+  A E  E G+
Sbjct:   17 DIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKIL--AENSGQSMEKVHADAERDNWMSAQETLEYGF 185          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_STRPI (ATP-dependent Clp protease proteolytic subunit OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=clpP PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 8.894e-34
Identity = 80/171 (46.78%), Postives = 111/171 (64.91%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGG--KATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESGW 933
            D  + LL+ RII L   V+D  A+ +I+QLLFLDA+DS KDI L++N+PGGSV+AG+ I D M   KADV TI +G+AASMG  + ++G+KGKR+ +PNA  MIHQP+G  GG  + TDM+I    +   R +   I+  +  +GQ  E    D +RDN+  A E  E G+
Sbjct:   17 DIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKIL--AENSGQSMEKVHADAERDNWMSAQETLEYGF 185          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_STRP2 (ATP-dependent Clp protease proteolytic subunit OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=clpP PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 8.894e-34
Identity = 80/171 (46.78%), Postives = 111/171 (64.91%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGG--KATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESGW 933
            D  + LL+ RII L   V+D  A+ +I+QLLFLDA+DS KDI L++N+PGGSV+AG+ I D M   KADV TI +G+AASMG  + ++G+KGKR+ +PNA  MIHQP+G  GG  + TDM+I    +   R +   I+  +  +GQ  E    D +RDN+  A E  E G+
Sbjct:   17 DIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKIL--AENSGQSMEKVHADAERDNWMSAQETLEYGF 185          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_METPB (ATP-dependent Clp protease proteolytic subunit OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=clpP PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 8.894e-34
Identity = 79/168 (47.02%), Postives = 109/168 (64.88%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESG 930
            D  + LLR+RIIFL   V+D  A  I++QLLFL+AE+ KK+I  +INSPGG VT+G+ IYD M+  +  V+T+C+G AASMG+ LLAAG  G R+ +PNAR+M+HQP G   G+ATD+ I  RE+   +    +I    +  G+  E      +RDNF  A  A+E G
Sbjct:   28 DIYSRLLRERIIFLTGPVEDQGASLIVAQLLFLEAENPKKEISFYINSPGGVVTSGLSIYDTMQFIRCPVTTLCVGQAASMGSLLLAAGEAGHRFALPNARIMVHQPSGGFQGQATDILIHAREIEALKKRLNEIY--VKHTGRDYETIHQALERDNFMTADAAKEFG 193          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP2_RHIME (ATP-dependent Clp protease proteolytic subunit 2 OS=Rhizobium meliloti GN=clpP2 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 8.894e-34
Identity = 79/178 (44.38%), Postives = 114/178 (64.04%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDI-I*SSRKAGQQNELDTDRDNFWDAWEARESGWGMASFMRASRD 966
            D  + LL++RIIFL   V+D  A  + +QLLFL+AE+ KK++ L+INSPGG VTAGM IYD M+  K  VST+C+G AASMG+ LLAAG K  R+  PN+R+M+HQP G   G+A+D+    R++   +    ++ +    +  ++ E   DRD+F  A EA +  WG+   +  SRD
Sbjct:   27 DIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEAENPKKEVALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRIMVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHCGRTYEEVEQTLDRDHFMSADEALD--WGLIDKVITSRD 202          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_WOLPM (ATP-dependent Clp protease proteolytic subunit OS=Wolbachia pipientis wMel GN=clpP PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.162e-33
Identity = 77/166 (46.39%), Postives = 111/166 (66.87%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*S-SRKAGQQNELDTDRDNFWDAWEARESG 930
            D  + L+++RIIF+   ++D  A  I++QLLFL++E+  KDI ++INSPGG VTAG+ IYD M+    DVST+C+G AASMG+ LLAAG+KGKRY +P++R+MIHQP G   G+ATD+ I   E+   +     I    +  + ++ E   +RD F D  EAR+ G
Sbjct:   19 DIYSRLVKERIIFVTGPIEDNMASVIVAQLLFLESENPNKDICMYINSPGGVVTAGLSIYDTMQYINPDVSTLCIGQAASMGSLLLAAGTKGKRYSLPHSRIMIHQPSGGYHGQATDIEIHANEILRVKKKLNQIYEKHTGNSLKKIEGMMERDKFMDPEEARKIG 184          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_RICAH (ATP-dependent Clp protease proteolytic subunit OS=Rickettsia akari (strain Hartford) GN=clpP PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.162e-33
Identity = 79/184 (42.93%), Postives = 121/184 (65.76%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQ---NELDTDRDNFWDAWEARESGWGMASFMRASRDYLPL 978
            D  + LL++RIIF+ S V+D  A+ I++QLLFL+AE+ KKD+ ++INSPGG VTAG+ IYD M+  K  V+T+C+G A SMG+ LL  G++G RY +P++R+MIHQP G   G+ATD+ I  +E    +    ++   S+  GQ+    E   +RDNF    EA++  +G+   + +SRD + +
Sbjct:   19 DIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDVYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGTQGMRYSLPHSRIMIHQPSGGYKGQATDIEIHAQETLKIKRLLNELY--SKHTGQELKHIEKSMERDNFMSPEEAKK--FGIIDNIISSRDVMTM 198          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP1_LEIXX (ATP-dependent Clp protease proteolytic subunit 1 OS=Leifsonia xyli subsp. xyli GN=clpP1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.162e-33
Identity = 79/162 (48.77%), Postives = 110/162 (67.90%), Query Frame = 1
Query:  451 LLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII-*SSRKAGQQNELDTDRDNFWDAWEARESGW 933
            LL+ RII+LGS+V D  A+ I ++LL L AEDSK+DI L+INSPGGS+TAGM IYD M+    D+ T+ +G+AASMG  LL AG+KGKRY  PNARV++HQP G  GG A+D+  + + + + +    +I   ++ K   Q   D DRD ++ A EA + G+
Sbjct:   14 LLKDRIIWLGSEVRDENANEIAAKLLLLAAEDSKRDIYLYINSPGGSITAGMAIYDTMQFVPNDIVTVGIGMAASMGQLLLTAGTKGKRYITPNARVLLHQPHGGFGGTASDIRTQAQLILHMKKRLAEITSEATGKTVDQVNADGDRDRWFTAQEALDYGF 175          
The following BLAST results are available for this feature:
BLAST of DY258638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_STRPS8.894e-3446.78ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STRPN8.894e-3446.78ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STRPJ8.894e-3446.78ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STRPI8.894e-3446.78ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STRP28.894e-3446.78ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_METPB8.894e-3447.02ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_RHIME8.894e-3444.38ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_WOLPM1.162e-3346.39ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RICAH1.162e-3342.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_LEIXX1.162e-3348.77ATP-dependent Clp protease proteolytic subunit 1 O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258638 ID=DY258638; Name=DY258638; organism=Citrus clementina; type=EST; length=1147bp
CTCTAGACTCTAGTTGTATTAAACGACATCGCCTTAAGTGTTGTCGTCGT
AGCAGTAGTACGACATCGTATAACGACAAAGCGAAAGAAAGAACACGATA
TTTTCGACCCTGTTTCTCGTTCTGACATTAAACTTTCTCGAACTGAACCC
ACCCAGCAAACAAATCCAAATAAGAAGATGGAGATGAGTTTGACAGCATC
TTCATTTTCGAAGCCACTCTTCTTCTCAAACCAATCCCTATCGAAAACCC
ACTTTCTCACTGCCGCTAATAACACTAACACTAGCACTACAATCAAAACG
AGGAGACCCACTTGCATAAAGGCCGCGAATAGTTCACCTTCAATAGCACA
GACTTTGTCTACCAACTGGGATGTCTCCAATTTTGCTGTTAATAATAATA
CTTCATCTCCATATCTGCCCAAATTTGAGGAGCTTGACACCACTAACATG
CTTCTCCGTCAGAGAATTATCTTCTTGGGATCCCAGGTTGATGACTTGAC
TGCTGATTTCATCATAAGTCAGCTCTTATTTCTTGACGCCGAAGATTCTA
AAAAAGATATCAGGTTGTTTATTAATTCACCTGGTGGCTCTGTTACTGCT
GGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCTGATGTTTCAAC
TATTTGCTTGGGGCTTGCTGCATCTATGGGTGCATTCCTGCTAGCAGCTG
GTTCAAAAGGGAAGAGATATTGCATGCCTAATGCAAGAGTAATGATCCAT
CAACCTCTTGGGACTGCTGGAGGCAAAGCAACAGATATGAGCATACGGAT
TAGAGAGATGTCTTACCCCAGGTTAAGCTGAACAGATATTATCTAAAGCT
CCCGGAAAGCCGGGCAGCAAAATGAGCTGGACACTGACCGTGATAATTTC
TGGGATGCTTGGGAAGCAAGGGAATCCGGTTGGGGGATGGCGTCCTTCAT
GAGGGCAAGCCGGGATTATTTGCCCCTACTTTGGAAACAATCCCTCCACC
CAACACTTCGGTGGGGGCCCAGGGGGAAAATTGAAAGGGAGACGGGAAAA
CAAAAAAAAAATTTGGCCCCCAAAACATAATTCTGTTTGGAAAAAGGGAA
AATATGGAAGGGTTCAGGGGGGGGGGGGAAAGGAAAAAAAGGGCCCT
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