DY258638

Overview
NameDY258638
Unique NameDY258638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1147
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_LYSSC (ATP-dependent Clp protease proteolytic subunit OS=Lysinibacillus sphaericus (strain C3-41) GN=clpP PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 4.705e-43
Identity = 94/168 (55.95%), Postives = 118/168 (70.24%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESG 930
            D  + LL+ RII LGS +DD  A+ I++QLLFL AED  KDI L+INSPGGS+TAGM IYD M++ K  V TIC+G+AASMGAFLLAAG  GKR+ +PNA VMIHQPLG A G+AT++ I  + + + R     I+  S + GQ  E+   DTDRDNF  A  A+E G
Sbjct:   19 DIYSRLLKDRIILLGSAIDDNVANSIVAQLLFLQAEDPDKDISLYINSPGGSITAGMAIYDTMQIIKPKVQTICIGMAASMGAFLLAAGEPGKRFALPNAEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNGIL--SERTGQPLEVIARDTDRDNFMTAERAKEYG 184          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_CLOBM (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=clpP PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 4.705e-43
Identity = 93/166 (56.02%), Postives = 119/166 (71.69%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRI-REMSYPRLS*TDII*SSRKAGQQNELDTDRDNFWDAWEARESG 930
            D  + LL+ RII L  +V+D TA  I++QLLFL+AED  KDI L+INSPGGS+T+GM IYD M+  K DVSTIC+G+AASMGAFLL AG+KGKRY +PN+ VMIHQPLG   G+ATD+ I   R +   +   T +   + K  +Q ELDT+RD+F  A EA+E G
Sbjct:   19 DIYSRLLKDRIIMLSEEVNDTTASLIVAQLLFLEAEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPDVSTICVGMAASMGAFLLVAGAKGKRYALPNSEVMIHQPLGGFQGQATDIGIHAERILKMKKKLNTILSDRTGKPLEQVELDTERDHFLSAEEAKEYG 184          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_AZOSB (ATP-dependent Clp protease proteolytic subunit OS=Azoarcus sp. (strain BH72) GN=clpP PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 4.705e-43
Identity = 92/168 (54.76%), Postives = 122/168 (72.62%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQ---QNELDTDRDNFWDAWEARESG 930
            D  + LL++R++FL   V+D+TA+ I++QLLFL++E+  KDI  +INSPGGSVTAG+ IYD M+  K +VST+C+G AASMGAFLLAAG KGKR+C+PN+RVMIHQPLG   G+A+D+ I  RE+ Y R     ++  ++  GQ   Q E DTDRDNF  A  A E G
Sbjct:   35 DIYSRLLKERVVFLVGPVNDVTANLIVAQLLFLESENPDKDIYFYINSPGGSVTAGLAIYDTMQFIKPNVSTLCIGQAASMGAFLLAAGEKGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAREILYLRERLNGML--AKHTGQTIEQIEKDTDRDNFMSATAAVEYG 200          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_THESQ (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp. (strain RQ2) GN=clpP PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 6.145e-43
Identity = 96/168 (57.14%), Postives = 119/168 (70.83%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQ---QNELDTDRDNFWDAWEARESG 930
            D  + LL+ RI+FLGS +DD  A+ +I+QLLFL+AED  KD+ L+INSPGGSVTAG+ IYD M+  K DVSTIC+G AASM A LLAAG+KGKRY +PNAR+MIHQPLG A G A D+ I  RE+   +     I+  S+  GQ   + E DTDRD F  A EA+E G
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRIL--SKHTGQPIEKIEKDTDRDFFMSAEEAKEYG 193          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_THEP1 (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=clpP PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 6.145e-43
Identity = 96/168 (57.14%), Postives = 119/168 (70.83%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQ---QNELDTDRDNFWDAWEARESG 930
            D  + LL+ RI+FLGS +DD  A+ +I+QLLFL+AED  KD+ L+INSPGGSVTAG+ IYD M+  K DVSTIC+G AASM A LLAAG+KGKRY +PNAR+MIHQPLG A G A D+ I  RE+   +     I+  S+  GQ   + E DTDRD F  A EA+E G
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRIL--SKHTGQPIEKIEKDTDRDFFMSAEEAKEYG 193          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_THEMA (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 6.145e-43
Identity = 96/168 (57.14%), Postives = 119/168 (70.83%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQ---QNELDTDRDNFWDAWEARESG 930
            D  + LL+ RI+FLGS +DD  A+ +I+QLLFL+AED  KD+ L+INSPGGSVTAG+ IYD M+  K DVSTIC+G AASM A LLAAG+KGKRY +PNAR+MIHQPLG A G A D+ I  RE+   +     I+  S+  GQ   + E DTDRD F  A EA+E G
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRIL--SKHTGQPIEKIEKDTDRDFFMSAEEAKEYG 193          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_BURCM (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=clpP PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 6.145e-43
Identity = 88/168 (52.38%), Postives = 127/168 (75.60%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL++R++F+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLA+G+KGKR+ +PN+RVMIHQPLG A G+A+D+ I+ RE+ Y +    +++  ++  GQ  E    DTDRDNF  + +A+  G
Sbjct:   42 DIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNNLL--AQHTGQDVERIARDTDRDNFMSSEDAKAYG 207          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_BURCH (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia cenocepacia (strain HI2424) GN=clpP PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 6.145e-43
Identity = 88/168 (52.38%), Postives = 127/168 (75.60%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL++R++F+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLA+G+KGKR+ +PN+RVMIHQPLG A G+A+D+ I+ RE+ Y +    +++  ++  GQ  E    DTDRDNF  + +A+  G
Sbjct:   42 DIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNNLL--AQHTGQDVERIARDTDRDNFMSSEDAKAYG 207          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_BURCA (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia cenocepacia (strain AU 1054) GN=clpP PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 6.145e-43
Identity = 88/168 (52.38%), Postives = 127/168 (75.60%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL++R++F+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLA+G+KGKR+ +PN+RVMIHQPLG A G+A+D+ I+ RE+ Y +    +++  ++  GQ  E    DTDRDNF  + +A+  G
Sbjct:   42 DIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNNLL--AQHTGQDVERIARDTDRDNFMSSEDAKAYG 207          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_BACSU (ATP-dependent Clp protease proteolytic subunit OS=Bacillus subtilis GN=clpP PE=1 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 6.145e-43
Identity = 95/168 (56.55%), Postives = 119/168 (70.83%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESG 930
            D  + LL+ RII LGS +DD  A+ I+SQLLFL AED +K+I L+INSPGGS+TAGM IYD M+  K  VSTIC+G+AASMGAFLLAAG KGKRY +PN+ VMIHQPLG A G+AT++ I  + +   R     ++  + + GQ  E+   DTDRDNF  A EA E G
Sbjct:   19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVL--AERTGQPLEVIERDTDRDNFKSAEEALEYG 184          
The following BLAST results are available for this feature:
BLAST of DY258638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_LYSSC4.705e-4355.95ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOBM4.705e-4356.02ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AZOSB4.705e-4354.76ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THESQ6.145e-4357.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP16.145e-4357.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEMA6.145e-4357.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURCM6.145e-4352.38ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURCH6.145e-4352.38ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURCA6.145e-4352.38ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BACSU6.145e-4356.55ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258638 ID=DY258638; Name=DY258638; organism=Citrus clementina; type=EST; length=1147bp
CTCTAGACTCTAGTTGTATTAAACGACATCGCCTTAAGTGTTGTCGTCGT
AGCAGTAGTACGACATCGTATAACGACAAAGCGAAAGAAAGAACACGATA
TTTTCGACCCTGTTTCTCGTTCTGACATTAAACTTTCTCGAACTGAACCC
ACCCAGCAAACAAATCCAAATAAGAAGATGGAGATGAGTTTGACAGCATC
TTCATTTTCGAAGCCACTCTTCTTCTCAAACCAATCCCTATCGAAAACCC
ACTTTCTCACTGCCGCTAATAACACTAACACTAGCACTACAATCAAAACG
AGGAGACCCACTTGCATAAAGGCCGCGAATAGTTCACCTTCAATAGCACA
GACTTTGTCTACCAACTGGGATGTCTCCAATTTTGCTGTTAATAATAATA
CTTCATCTCCATATCTGCCCAAATTTGAGGAGCTTGACACCACTAACATG
CTTCTCCGTCAGAGAATTATCTTCTTGGGATCCCAGGTTGATGACTTGAC
TGCTGATTTCATCATAAGTCAGCTCTTATTTCTTGACGCCGAAGATTCTA
AAAAAGATATCAGGTTGTTTATTAATTCACCTGGTGGCTCTGTTACTGCT
GGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCTGATGTTTCAAC
TATTTGCTTGGGGCTTGCTGCATCTATGGGTGCATTCCTGCTAGCAGCTG
GTTCAAAAGGGAAGAGATATTGCATGCCTAATGCAAGAGTAATGATCCAT
CAACCTCTTGGGACTGCTGGAGGCAAAGCAACAGATATGAGCATACGGAT
TAGAGAGATGTCTTACCCCAGGTTAAGCTGAACAGATATTATCTAAAGCT
CCCGGAAAGCCGGGCAGCAAAATGAGCTGGACACTGACCGTGATAATTTC
TGGGATGCTTGGGAAGCAAGGGAATCCGGTTGGGGGATGGCGTCCTTCAT
GAGGGCAAGCCGGGATTATTTGCCCCTACTTTGGAAACAATCCCTCCACC
CAACACTTCGGTGGGGGCCCAGGGGGAAAATTGAAAGGGAGACGGGAAAA
CAAAAAAAAAATTTGGCCCCCAAAACATAATTCTGTTTGGAAAAAGGGAA
AATATGGAAGGGTTCAGGGGGGGGGGGGAAAGGAAAAAAAGGGCCCT
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