DY258638

Overview
NameDY258638
Unique NameDY258638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1147
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNY3 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.335e-42
Identity = 89/166 (53.61%), Postives = 124/166 (74.70%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPR-LS*TDII*SSRKAGQQNELDTDRDNFWDAWEARESG 930
            D  + LLR+RI+FLG +V D  A+ +++QLLFL+AED +KDI L+INSPGGSV+AG+GI+D M   + DV TIC+GLAASMGAFLL+AG+KGKR  +PN+R+MIHQPLG A G+ATD+ I+ +E+ Y + L    +   + K+ ++   DT+RD F  A E++E G
Sbjct:   17 DIYSRLLRERIVFLGQEVRDENANLVVAQLLFLEAEDPEKDIYLYINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMIHQPLGGAQGQATDIEIQAKEILYLKALLNQHLANHTGKSLEEITADTERDFFMSAEESKEYG 182          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_PSEMY (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas mendocina (strain ymp) GN=clpP PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 3.050e-42
Identity = 92/168 (54.76%), Postives = 119/168 (70.83%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESG 930
            D  + LL++R+IFL  QV+D  A+ I +QLLFL+AE+  KDI L+INSPGGSVTAGM IYD M+  KADVST C+G A SMGAFLLA G+KGKR+C+PN+RVMIHQPLG   G+A+D+ I  +E+ + R    +++  +   GQ  E    DT+RDNF  A  A E G
Sbjct:   35 DIYSRLLKERVIFLVGQVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKADVSTTCIGQACSMGAFLLAGGAKGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFIRERLNELL--AHHTGQSLETIERDTNRDNFMSAPRAVEYG 200          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_MOOTA (ATP-dependent Clp protease proteolytic subunit OS=Moorella thermoacetica (strain ATCC 39073) GN=clpP PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 3.050e-42
Identity = 90/166 (54.22%), Postives = 120/166 (72.29%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*S-SRKAGQQNELDTDRDNFWDAWEARESG 930
            D  + LL+ RIIFLGS +DD  A+ +I+Q+LFL+AED  KDI L+INSPGGS++AGM I+D M+  + DVSTIC+GLAASMGAFLLAAG+KGKR+ +PN+ +MIHQP+G   G+A D+ I  + +   R +   I+   + K  +Q   DTDRD+F  A EARE G
Sbjct:   20 DIYSRLLKDRIIFLGSAIDDHVANLVIAQMLFLEAEDPDKDIHLYINSPGGSISAGMAIFDTMQYIRPDVSTICVGLAASMGAFLLAAGAKGKRFALPNSEIMIHQPMGGTQGQAVDIEIHAKRILAIRDNLNRILSEITGKPLEQIARDTDRDHFMTAREAREYG 185          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_CARHZ (ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=clpP PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 3.050e-42
Identity = 91/168 (54.17%), Postives = 119/168 (70.83%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQN---ELDTDRDNFWDAWEARESG 930
            D  + LL+ R IF+G  +DD  A+ +I+Q+LFL+AED +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLLAAG+KGKR+ +P AR+MIHQPLG   G+ATD+ I  RE+   R    +++  ++  GQ     E DT+RD F  A EA+E G
Sbjct:   20 DIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPGGVITAGMAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQATDIDIHAREILRMRDMLNELL--TKHTGQPKEKIERDTERDFFMSAAEAKEYG 185          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP2_BURXL (ATP-dependent Clp protease proteolytic subunit 2 OS=Burkholderia xenovorans (strain LB400) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 3.050e-42
Identity = 89/168 (52.98%), Postives = 123/168 (73.21%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNE---LDTDRDNFWDAWEARESG 930
            D  + LL++RI+FL  +V+D TA+ +++Q+LFL++E+  KDI  +INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLAAG+KGKR+ +PN+RVMIHQPLG A G+A+D+ I+ RE+ Y +     ++  +   GQ  E    DTDRDNF    +A+  G
Sbjct:   42 DIYSRLLKERIVFLVGEVNDQTANLVVAQMLFLESENPDKDISFYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNHLL--AHHTGQPVERIARDTDRDNFMSGDDAQAYG 207          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_THIDA (ATP-dependent Clp protease proteolytic subunit OS=Thiobacillus denitrificans (strain ATCC 25259) GN=clpP PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 3.983e-42
Identity = 88/168 (52.38%), Postives = 123/168 (73.21%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQQNEL---DTDRDNFWDAWEARESG 930
            D  + LL++R+IFL   V+D TA+ I++Q+LFL++E+  KDI L+INSPGGSV+AG+ IYD M+  K DVST+C+G AASMGAFLL AG+KGKRYC+PN+RVMIHQPLG   G+A+D+ I  +E+ Y +     ++  ++  GQ  E+   DTDRDNF  A ++ + G
Sbjct:   33 DIYSRLLKERVIFLVGPVNDATANLIVAQMLFLESENPDKDIYLYINSPGGSVSAGLAIYDTMQFIKPDVSTLCIGQAASMGAFLLTAGAKGKRYCLPNSRVMIHQPLGGFQGQASDIEIHAKEILYLKARLNGML--AKHTGQSLEVIDRDTDRDNFMSAEDSVKYG 198          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_SALTY (ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhimurium GN=clpP PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 3.983e-42
Identity = 92/168 (54.76%), Postives = 121/168 (72.02%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQ---QNELDTDRDNFWDAWEARESG 930
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+   +    +++  +   GQ   Q E DT+RD F  A EA E G
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELM--AHHTGQSLEQIERDTERDRFLSAPEAVEYG 197          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_SALTI (ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhi GN=clpP PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 3.983e-42
Identity = 92/168 (54.76%), Postives = 121/168 (72.02%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQ---QNELDTDRDNFWDAWEARESG 930
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+   +    +++  +   GQ   Q E DT+RD F  A EA E G
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELM--AHHTGQSLEQIERDTERDRFLSAPEAVEYG 197          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_SALSV (ATP-dependent Clp protease proteolytic subunit OS=Salmonella schwarzengrund (strain CVM19633) GN=clpP PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 3.983e-42
Identity = 92/168 (54.76%), Postives = 121/168 (72.02%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQ---QNELDTDRDNFWDAWEARESG 930
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+   +    +++  +   GQ   Q E DT+RD F  A EA E G
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELM--AHHTGQSLEQIERDTERDRFLSAPEAVEYG 197          
BLAST of DY258638 vs. ExPASy Swiss-Prot
Match: CLPP_SALNS (ATP-dependent Clp protease proteolytic subunit OS=Salmonella newport (strain SL254) GN=clpP PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 3.983e-42
Identity = 92/168 (54.76%), Postives = 121/168 (72.02%), Query Frame = 1
Query:  436 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREMSYPRLS*TDII*SSRKAGQ---QNELDTDRDNFWDAWEARESG 930
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+   +    +++  +   GQ   Q E DT+RD F  A EA E G
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELM--AHHTGQSLEQIERDTERDRFLSAPEAVEYG 197          
The following BLAST results are available for this feature:
BLAST of DY258638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP1_SYNY32.335e-4253.61ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_PSEMY3.050e-4254.76ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MOOTA3.050e-4254.22ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CARHZ3.050e-4254.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_BURXL3.050e-4252.98ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_THIDA3.983e-4252.38ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALTY3.983e-4254.76ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALTI3.983e-4254.76ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALSV3.983e-4254.76ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALNS3.983e-4254.76ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA03FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258638 ID=DY258638; Name=DY258638; organism=Citrus clementina; type=EST; length=1147bp
CTCTAGACTCTAGTTGTATTAAACGACATCGCCTTAAGTGTTGTCGTCGT
AGCAGTAGTACGACATCGTATAACGACAAAGCGAAAGAAAGAACACGATA
TTTTCGACCCTGTTTCTCGTTCTGACATTAAACTTTCTCGAACTGAACCC
ACCCAGCAAACAAATCCAAATAAGAAGATGGAGATGAGTTTGACAGCATC
TTCATTTTCGAAGCCACTCTTCTTCTCAAACCAATCCCTATCGAAAACCC
ACTTTCTCACTGCCGCTAATAACACTAACACTAGCACTACAATCAAAACG
AGGAGACCCACTTGCATAAAGGCCGCGAATAGTTCACCTTCAATAGCACA
GACTTTGTCTACCAACTGGGATGTCTCCAATTTTGCTGTTAATAATAATA
CTTCATCTCCATATCTGCCCAAATTTGAGGAGCTTGACACCACTAACATG
CTTCTCCGTCAGAGAATTATCTTCTTGGGATCCCAGGTTGATGACTTGAC
TGCTGATTTCATCATAAGTCAGCTCTTATTTCTTGACGCCGAAGATTCTA
AAAAAGATATCAGGTTGTTTATTAATTCACCTGGTGGCTCTGTTACTGCT
GGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCTGATGTTTCAAC
TATTTGCTTGGGGCTTGCTGCATCTATGGGTGCATTCCTGCTAGCAGCTG
GTTCAAAAGGGAAGAGATATTGCATGCCTAATGCAAGAGTAATGATCCAT
CAACCTCTTGGGACTGCTGGAGGCAAAGCAACAGATATGAGCATACGGAT
TAGAGAGATGTCTTACCCCAGGTTAAGCTGAACAGATATTATCTAAAGCT
CCCGGAAAGCCGGGCAGCAAAATGAGCTGGACACTGACCGTGATAATTTC
TGGGATGCTTGGGAAGCAAGGGAATCCGGTTGGGGGATGGCGTCCTTCAT
GAGGGCAAGCCGGGATTATTTGCCCCTACTTTGGAAACAATCCCTCCACC
CAACACTTCGGTGGGGGCCCAGGGGGAAAATTGAAAGGGAGACGGGAAAA
CAAAAAAAAAATTTGGCCCCCAAAACATAATTCTGTTTGGAAAAAGGGAA
AATATGGAAGGGTTCAGGGGGGGGGGGGAAAGGAAAAAAAGGGCCCT
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