DY258639

Overview
NameDY258639
Unique NameDY258639
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length896
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258639_ssr123 microsatellite DY258639_ssr123:123..134. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1190 contig Ccv1_Contig1190:1..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA3_ARATH (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.136e-35
Identity = 77/150 (51.33%), Postives = 99/150 (66.00%), Query Frame = 1
Query:  208 SNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMK---------GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGL 630
            S D +   E+ +  + T+P  KAQ+VGWPPVR+YRKN ++         G   +VKV+++GAPYLRK+DL  Y  Y ELL ALE MF F      V E    D   G ++VPTYEDKDGDWML+GDVPW+MF+ +CKR+R+ K SEA GL
Sbjct:   41 STDTEKEIESSSRKTETSPPRKAQIVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELLKALEVMFKF-----SVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGSEAKGL 185          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA1_ARATH (Auxin-responsive protein IAA1 OS=Arabidopsis thaliana GN=IAA1 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.531e-35
Identity = 73/148 (49.32%), Postives = 100/148 (67.57%), Query Frame = 1
Query:  178 ETVDLNLMGSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEA 621
            + ++L+ + S+N  K+   ND+   +  P  K Q+VGWPPVR+ RKN    +  +VKV+++GAPYLRK+DL++Y +Y ELL ALE+MF F      V E    +   G  +VPTYEDKDGDWMLVGDVPW MF  SC+++R+ K SEA
Sbjct:   25 QQLELSCVRSNNKRKN---NDSTEESAPPPAKTQIVGWPPVRSNRKNNNNKNVSYVKVSMDGAPYLRKIDLKMYKNYPELLKALENMFKFT-----VGEYSEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRIMKGSEA 164          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA3_ORYSJ (Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica GN=IAA3 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.317e-35
Identity = 76/162 (46.91%), Postives = 105/162 (64.81%), Query Frame = 1
Query:  229 EENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGS----------------CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRTPAKNSSKS 666
            EE+  +A+   PA KAQVVGWPP+R+YRKN M  +                  +VKV+++GAPYLRKVDL+ Y +Y+++   LE MF   +       ++  +N    EYV TYEDKDGDWMLVGDVPW+MF +SC+R+R+ K S+AIGLAPR   K+ +++
Sbjct:  107 EEDKKVAAPPQPAAKAQVVGWPPIRSYRKNTMATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDMSLGLEKMFIGFS-----TGKEGAENQKDGEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSDAIGLAPRAGEKSKNRN 263          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: AX22E_PHAAU (Auxin-induced protein 22E OS=Phaseolus aureus GN=AUX22E PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.256e-34
Identity = 78/158 (49.37%), Postives = 102/158 (64.56%), Query Frame = 1
Query:  214 DNKHCEEN---DAMASTTTP--------ATKAQVVGWPPVRAYRKNAMK--------GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGL 630
            +   C+ N   D+  STTT           K QVVGWPP+R++RKN+++        G+  ++KV++ GAPYLRK+DL++Y SY ELL AL+++F         +ER   +  NG EY PTYEDKDGDWMLVGDVPW MFV SCKR+R+ K SEA GL
Sbjct:   48 EESRCKSNINSDSSDSTTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQQKKVEQGDGTGMYLKVSMAGAPYLRKIDLKVYKSYPELLKALQNLFKCTF--GEYSER---EGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIIKGSEAKGL 200          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA4_ARATH (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.641e-34
Identity = 74/140 (52.86%), Postives = 95/140 (67.86%), Query Frame = 1
Query:  232 ENDAMASTTTPATKAQVVGWPPVRAYRKNAMK-------GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGL 630
            E+     T +P  KAQ+VGWPPVR+YRKN ++       G   +VKV+++GAPYLRK+DL +Y  Y EL+ +LE+MF F      V E    +   G ++VPTYEDKDGDWMLVGDVPW+MFV SCKR+R+ K SE  GL
Sbjct:   48 ESTGKTETASPP-KAQIVGWPPVRSYRKNNVQTKKSESEGQGNYVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFKF-----SVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGL 181          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA2_ARATH (Auxin-responsive protein IAA2 OS=Arabidopsis thaliana GN=IAA2 PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 2.798e-34
Identity = 85/190 (44.74%), Postives = 109/190 (57.37%), Query Frame = 1
Query:   61 MSPEKVNHLPESDTKXXXXXXXXXXECHRTKAGTKRGFLETVDLNLMGSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGL 630
            M+ EKVN L   DT+                 G      E  +++ + S+N     E  D   ST  P TK Q+VGWPPVR+ RKN    S  +VKV+++GAPYLRK+DL+ Y +Y ELL ALE+MF  +     + E    +   G  +VPTYEDKDGDWMLVGDVPW MF  SCKR+R+ K S+A  L
Sbjct:    1 MAYEKVNELNLKDTELCLGLP-----------GRTEKIKEEQEVSCVKSNNKRLFEETRDEEEST--PPTKTQIVGWPPVRSSRKN--NNSVSYVKVSMDGAPYLRKIDLKTYKNYPELLKALENMFKVM-----IGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCKRLRIMKGSDAPAL 170          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA19_ORYSJ (Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.655e-34
Identity = 82/201 (40.80%), Postives = 117/201 (58.21%), Query Frame = 1
Query:  151 KAGTKRGFLETVDLN-----LMGSSNDNKHCEENDA-------MASTTTPATKAQVVGWPPVRAYRKNAMKGS---------------CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFS-FLT---------IRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRT 642
            + G KRGF++++D +        + +D +   E +         A+    A KAQVVGWPPVR+YRKN +  S               C +VKV+++GAPYLRKVDL+ Y SY++L  ALE MFS F+T          R+ + +    D +   EYV TYEDKD DWMLVGD+PW +F  SC+++R+ + S+A G+APR+
Sbjct:   73 RGGAKRGFVDSLDRSEGRRAAATAGDDERGVREEEEEEKGLGEAAAGAPRAAKAQVVGWPPVRSYRKNTLAASATKTKGEDQGKSEVGCCYVKVSMDGAPYLRKVDLKTYSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWMLVGDLPWDLFTTSCRKLRIMRGSDAAGMAPRS 273          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSJ (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. japonica GN=IAA5 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.369e-33
Identity = 83/192 (43.23%), Postives = 115/192 (59.90%), Query Frame = 1
Query:  148 TKAGTKRGFLETVDLN--LMGSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGSCK---------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFS-FLT----IRNHVNERKII-----DNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRT 642
            TKA +KR F ++   +    GS      C++  A A+   PA KAQVVGWPPVR YRKN +  S                 +VKV+++GAPYLRKVDL++Y SY++L  ALE MFS F+T    +R   N  ++      D +   EYV TYEDKD DWMLVGD+PW +F   C+++++ + S+A G+APR+
Sbjct:   73 TKAASKRAFPDSSPRHGASSGSVAAAAACQDKAAPAAAP-PAAKAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGPLYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRS 263          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSI (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. indica GN=IAA5 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 5.278e-33
Identity = 83/195 (42.56%), Postives = 118/195 (60.51%), Query Frame = 1
Query:  148 TKAGTKRGFLETVDLNLMGSSNDN-----KHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGSCK---------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFS-FLT----IRNHVNERKII-----DNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGLAPRT 642
            TKA +KR F ++   +  G+S+ +       C++  A A+   PA KAQVVGWPPVR YRKN +  S                 +VKV+++GAPYLRKVDL++Y SY++L  ALE MFS F+T    +R   N  ++      D +   EYV TYEDKD DWMLVGD+PW +F   C+++++ + S+A G+APR+
Sbjct:   73 TKAASKRAFPDSSPRH--GASSGSVAAAAAACQDKAAPAAAP-PAAKAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGPLYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRS 264          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA15_ARATH (Auxin-responsive protein IAA15 OS=Arabidopsis thaliana GN=IAA15 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.536e-32
Identity = 81/160 (50.62%), Postives = 102/160 (63.75%), Query Frame = 1
Query:  151 KAGTKRGFLETVDLNLMGSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGL 630
            K G KR FLETVDL L G +++N +          ++  T  Q+VGWPPV   RK   +   K+VKVA++GA YLRKVDL +Y  Y +L +ALE+MF  +     V E +        E+V TYEDKDGD MLVGDVPW MFVESCKR+RL K+ +AIGL
Sbjct:   38 KFGNKRRFLETVDLKL-GEAHENNYI---------SSMVTNDQLVGWPPVATARKTVRR---KYVKVALDGAAYLRKVDLGMYDCYGQLFTALENMFQGIITICRVTELE-----RKGEFVATYEDKDGDLMLVGDVPWMMFVESCKRMRLMKTGDAIGL 179          
The following BLAST results are available for this feature:
BLAST of DY258639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA3_ARATH1.136e-3551.33Auxin-responsive protein IAA3 OS=Arabidopsis thali... [more]
IAA1_ARATH2.531e-3549.32Auxin-responsive protein IAA1 OS=Arabidopsis thali... [more]
IAA3_ORYSJ4.317e-3546.91Auxin-responsive protein IAA3 OS=Oryza sativa subs... [more]
AX22E_PHAAU1.256e-3449.37Auxin-induced protein 22E OS=Phaseolus aureus GN=A... [more]
IAA4_ARATH1.641e-3452.86Auxin-responsive protein IAA4 OS=Arabidopsis thali... [more]
IAA2_ARATH2.798e-3444.74Auxin-responsive protein IAA2 OS=Arabidopsis thali... [more]
IAA19_ORYSJ3.655e-3440.80Auxin-responsive protein IAA19 OS=Oryza sativa sub... [more]
IAA5_ORYSJ2.369e-3343.23Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA5_ORYSI5.278e-3342.56Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA15_ARATH1.536e-3250.63Auxin-responsive protein IAA15 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258639 ID=DY258639; Name=DY258639; organism=Citrus clementina; type=EST; length=896bp
CATAATTTTGTTAACACACTTCTCCACATAGCAAAGCAAAATTTGGCAAC
CTTAGAGAAAATGTCCCCGGAAAAAGTTAATCATTTGCCGGAATCCGACA
CGAAGCTCACGTTAGGCTTACCCGGCGGCGGCGGCGAGTGTCACCGGACG
AAAGCCGGCACGAAGCGTGGCTTCTTAGAGACCGTTGATCTAAACCTCAT
GGGCTCAAGCAATGATAACAAACATTGCGAAGAGAACGATGCAATGGCCT
CGACTACAACCCCAGCAACCAAGGCACAAGTGGTGGGGTGGCCGCCGGTG
AGAGCATATCGGAAAAATGCTATGAAGGGCAGCTGCAAATTTGTAAAGGT
GGCAGTTGAAGGAGCTCCATATCTAAGAAAAGTTGACCTTGAGATATACC
ATAGTTATCAAGAACTCTTGAGTGCTTTAGAGGATATGTTCTCATTCTTG
ACTATAAGGAACCACGTAAATGAGAGAAAGATTATAGATAACGTAAATGG
AGTTGAATATGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTAG
TTGGAGATGTGCCATGGAAAATGTTTGTTGAATCTTGCAAGCGAGTAAGG
TTGACGAAAAGCTCAGAAGCAATTGGGTTAGCTCCAAGAACACCTGCAAA
AAATTCAAGCAAGAGTTGAAGAATGAATAACAGAATAAGGGCCTTATTGT
ATAAGGAGGCATTCCTGGAGTGACAATTAATGGCTGTACAGAGGCTTTTG
ATTGATTTGAATTTTAGTACACACCACTGTGTTTTCTTAGGAGAGTTTTG
ACCATCAGATTTTGATCAGTTGATATTAGAGAAATAAGGAGAGCCCTGCT
GCCTGTAATTATATATCATATAATATCAGAAGTTACTTACGGGAAT
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