DY258639

Overview
NameDY258639
Unique NameDY258639
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length896
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA6_PEA (Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA6 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.100e-30
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  229 EENDAMASTTTPATKAQVVGWPPVRAYRKNAM-KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIG 627
            EEN       +   K QVVGWPPV +YRK  M +GS  ++KV+++GAPYLRK+DL ++  Y EL  ALE +F    I       + + +    E+VP YEDKDGDWMLVGDVPW+MF+ESCKR+R+ K S+A G
Sbjct:   39 EENGGSGDRKSVDKKNQVVGWPPVCSYRKKNMNEGSKMYMKVSMDGAPYLRKIDLCLHKGYLELALALEKLFDCCGIE------EALKDAENCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKG 166          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA19_ARATH (Auxin-responsive protein IAA19 OS=Arabidopsis thaliana GN=IAA19 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.100e-30
Identity = 79/177 (44.63%), Postives = 102/177 (57.63%), Query Frame = 1
Query:  163 KRGFLETVDLNLMGSSNDNKHCEEN------DAMASTTTPATKAQVVGWPPVRAYRKNAMKGSCK----------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEA--IGLAPR 639
            KR F E   +N+  S +++  CE        DA     +PA K+QVVGWPPV +YRK   K SCK          +VKV+++G PYLRK+DL     Y +L  AL+ +F F  I   + +       +  EYV  YEDKDGDWML GDVPW MF+ESCKR+R+ K S+A   GL PR
Sbjct:   29 KRAFTE---MNMTSSGSNSDQCESGVVSSGGDAEKVNDSPAAKSQVVGWPPVCSYRK---KNSCKEASTTKVGLGYVKVSMDGVPYLRKMDLGSSQGYDDLAFALDKLFGFRGIGVALKDG------DNCEYVTIYEDKDGDWMLAGDVPWGMFLESCKRLRIMKRSDATGFGLQPR 193          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: AUX22_SOYBN (Auxin-induced protein AUX22 OS=Glycine max GN=AUX22 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.589e-29
Identity = 77/173 (44.51%), Postives = 107/173 (61.85%), Query Frame = 1
Query:  163 KRGFLETVDLNLMGSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRK-NAM-KGSCK-FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEA--IGLAPRTPAKNSSKS 666
            KR F E  D    G  ++N      D    T     K+QVVGWPPV +YRK N+M +G+ K +VKV+++GAP+LRK+DL ++  Y +L  AL+ +F    +       + + N +  E+VP YEDKDGDWMLVGDVPW+MF+ESCKR+R+ K S+A   GL P+   K   +S
Sbjct:   34 KRAFSEIDD----GVGDENSSSGGGDRKMETN----KSQVVGWPPVCSYRKKNSMNEGASKMYVKVSMDGAPFLRKIDLGLHKGYSDLALALDKLFGCYGMV------EALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKKSDAKGFGLQPKGSLKGFIES 192          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: AX22A_PHAAU (Auxin-induced protein 22A OS=Phaseolus aureus GN=AUX22A PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.914e-28
Identity = 66/136 (48.53%), Postives = 91/136 (66.91%), Query Frame = 1
Query:  271 KAQVVGWPPVRAYRK--NAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEA--IGLAPRTPAKNSSKS 666
            K QVVGWPPV +YRK  +  + S  +VKV+++GAP+LRK+DL ++  Y +L  ALE +F    +       + + NV   E+VP YEDKDGDWMLVGDVPW+MF+ESCKR+R+ K ++A   GL P+   K   +S
Sbjct:   62 KNQVVGWPPVCSYRKKNSVNEASKMYVKVSMDGAPFLRKMDLGMHKGYSDLAFALEKLFGCYGMV------EALKNVENGEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRADAKGFGLQPKGSLKGFIES 191          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: AX22C_PHAAU (Auxin-induced protein 22C OS=Phaseolus aureus GN=AUX22C PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.112e-28
Identity = 64/133 (48.12%), Postives = 85/133 (63.91%), Query Frame = 1
Query:  232 ENDAMASTTTPATKAQVVGWPPVRAYRK-NAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIG 627
            EN +        TK QVVGWPPV +YRK N +     +VKV+++GAP+LRK+DL ++  Y +L  AL+  F    I       + + +    E+VP YEDKDGDWMLVGDVPW+MF ESCKR+R+ K S+A G
Sbjct:   44 ENSSSEEDGKKETKNQVVGWPPVCSYRKKNTVNEPKLYVKVSMDGAPFLRKIDLAMHKGYSDLAFALDKFFGCYGIC------EALKDAENAEHVPIYEDKDGDWMLVGDVPWEMFRESCKRLRIMKRSDAKG 170          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA5_ARATH (Auxin-responsive protein IAA5 OS=Arabidopsis thaliana GN=IAA5 PE=2 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.943e-27
Identity = 64/120 (53.33%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  262 PATKAQVVGWPPVRAYR-KNAMKGS-CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSS 615
            PA K+QVVGWPPV +YR KN+++ +   +VKV+V+GA +LRK+DLE+Y  YQ+L SAL+ +F       ++N     D +   E VP YEDKDGDWML GDVPW+MF+ SCKR+R+ K S
Sbjct:   48 PAKKSQVVGWPPVCSYRRKNSLERTKSSYVKVSVDGAAFLRKIDLEMYKCYQDLASALQILFGC-----YIN---FDDTLKESECVPIYEDKDGDWMLAGDVPWEMFLGSCKRLRIMKRS 159          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA31_ORYSJ (Auxin-responsive protein IAA31 OS=Oryza sativa subsp. japonica GN=IAA31 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.785e-26
Identity = 68/160 (42.50%), Postives = 90/160 (56.25%), Query Frame = 1
Query:  232 ENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGSCK---------------------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGL 630
            E D        A KAQVVGWPPVR+YRK+ ++ +                             FVKV+++GAPYLRK+DL++Y  Y+EL  ALE MF   +     +       VN  ++  TYEDKDGD MLVGDVP++MF+ +CKR+R+ K SEA GL
Sbjct:   38 EPDQAKIKPAAAAKAQVVGWPPVRSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGLFVKVSMDGAPYLRKIDLKVYKGYRELREALEAMFLCFSGGAAADAA-----VNPSDFAVTYEDKDGDLMLVGDVPFEMFISTCKRLRIMKGSEARGL 192          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA24_ORYSJ (Auxin-responsive protein IAA24 OS=Oryza sativa subsp. japonica GN=IAA24 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.161e-26
Identity = 73/177 (41.24%), Postives = 96/177 (54.24%), Query Frame = 1
Query:  157 GTKRGFLETVDLNLMGSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAM----------------------KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEA 621
            G KR  LE+ D    G+       E +D    T  PA KAQVVGWPPVRAYR+N                        +G   +VKV+++GAPYLRKVDL++   Y+EL  AL+ +F+              D  +  ++   YEDKDGD MLVGDVPW+MF+ SCK++R+ K SEA
Sbjct:   53 GAKRS-LESTDSMASGTGTSAAGDEHDD---DTAAPA-KAQVVGWPPVRAYRRNTFHQAAAAAAATKKGGDEKQKQQQQGGGLYVKVSMDGAPYLRKVDLKMCKGYRELREALDLLFT------KCFSATASDGCSDGQFAIAYEDKDGDLMLVGDVPWEMFISSCKKLRIMKGSEA 218          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA6_ARATH (Auxin-responsive protein IAA6 OS=Arabidopsis thaliana GN=IAA6 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.066e-25
Identity = 65/139 (46.76%), Postives = 88/139 (63.31%), Query Frame = 1
Query:  232 ENDAMAST---TTPATKAQVVGWPPVRAYR--KNAMKGS--CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIG 627
            EN  ++S    + P  K+Q VGWPPV +YR  KN  + S    +VKV+++G PY+RK+DL   +SY  L++ LE++F  L I      +K        EY+  YEDKD DWMLVGDVPW+MF ESCKR+R+ K S+A G
Sbjct:   52 ENSVVSSVEDESLPVVKSQAVGWPPVCSYRRKKNNEEASKAIGYVKVSMDGVPYMRKIDLGSSNSYINLVTVLENLFGCLGIGVAKEGKKC-------EYIIIYEDKDRDWMLVGDVPWQMFKESCKRLRIVKRSDATG 183          
BLAST of DY258639 vs. ExPASy Swiss-Prot
Match: IAA12_ORYSJ (Auxin-responsive protein IAA12 OS=Oryza sativa subsp. japonica GN=IAA12 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.909e-25
Identity = 78/204 (38.24%), Postives = 103/204 (50.49%), Query Frame = 1
Query:  148 TKAGTKRGFLETVDLNLMGSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMK-------------GSCK--------------------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLTKSSEAIGL-APR 639
            T  G KR      D N   ++ D+   +E+DA+ +   P  KAQVVGWPPVR+YRK+  +              SC                            VKV+++GAPYLRK+DL +Y  Y+EL  ALE MF   +           D  N  E+  TY+DKDGD MLVGDVP+ MF  +CK++R+ K SEA GL +PR
Sbjct:   32 TPRGKKRA-AAAEDNNANAAAADD---DEHDAVEAAP-PVAKAQVVGWPPVRSYRKSCFQQQSAAASKSKAAVSSCNNKDEPITKNAAPAPAASSAAAANGGSLVKVSMDGAPYLRKIDLRMYKGYRELREALEAMFVCFS--------GAADGANPSEFAITYQDKDGDLMLVGDVPFDMFTSTCKKLRIMKRSEATGLGSPR 222          
The following BLAST results are available for this feature:
BLAST of DY258639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA6_PEA1.100e-3050.75Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA... [more]
IAA19_ARATH1.100e-3044.63Auxin-responsive protein IAA19 OS=Arabidopsis thal... [more]
AUX22_SOYBN1.589e-2944.51Auxin-induced protein AUX22 OS=Glycine max GN=AUX2... [more]
AX22A_PHAAU3.914e-2848.53Auxin-induced protein 22A OS=Phaseolus aureus GN=A... [more]
AX22C_PHAAU5.112e-2848.12Auxin-induced protein 22C OS=Phaseolus aureus GN=A... [more]
IAA5_ARATH1.943e-2753.33Auxin-responsive protein IAA5 OS=Arabidopsis thali... [more]
IAA31_ORYSJ4.785e-2642.50Auxin-responsive protein IAA31 OS=Oryza sativa sub... [more]
IAA24_ORYSJ8.161e-2641.24Auxin-responsive protein IAA24 OS=Oryza sativa sub... [more]
IAA6_ARATH1.066e-2546.76Auxin-responsive protein IAA6 OS=Arabidopsis thali... [more]
IAA12_ORYSJ6.909e-2538.24Auxin-responsive protein IAA12 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DA07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258639 ID=DY258639; Name=DY258639; organism=Citrus clementina; type=EST; length=896bp
CATAATTTTGTTAACACACTTCTCCACATAGCAAAGCAAAATTTGGCAAC
CTTAGAGAAAATGTCCCCGGAAAAAGTTAATCATTTGCCGGAATCCGACA
CGAAGCTCACGTTAGGCTTACCCGGCGGCGGCGGCGAGTGTCACCGGACG
AAAGCCGGCACGAAGCGTGGCTTCTTAGAGACCGTTGATCTAAACCTCAT
GGGCTCAAGCAATGATAACAAACATTGCGAAGAGAACGATGCAATGGCCT
CGACTACAACCCCAGCAACCAAGGCACAAGTGGTGGGGTGGCCGCCGGTG
AGAGCATATCGGAAAAATGCTATGAAGGGCAGCTGCAAATTTGTAAAGGT
GGCAGTTGAAGGAGCTCCATATCTAAGAAAAGTTGACCTTGAGATATACC
ATAGTTATCAAGAACTCTTGAGTGCTTTAGAGGATATGTTCTCATTCTTG
ACTATAAGGAACCACGTAAATGAGAGAAAGATTATAGATAACGTAAATGG
AGTTGAATATGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTAG
TTGGAGATGTGCCATGGAAAATGTTTGTTGAATCTTGCAAGCGAGTAAGG
TTGACGAAAAGCTCAGAAGCAATTGGGTTAGCTCCAAGAACACCTGCAAA
AAATTCAAGCAAGAGTTGAAGAATGAATAACAGAATAAGGGCCTTATTGT
ATAAGGAGGCATTCCTGGAGTGACAATTAATGGCTGTACAGAGGCTTTTG
ATTGATTTGAATTTTAGTACACACCACTGTGTTTTCTTAGGAGAGTTTTG
ACCATCAGATTTTGATCAGTTGATATTAGAGAAATAAGGAGAGCCCTGCT
GCCTGTAATTATATATCATATAATATCAGAAGTTACTTACGGGAAT
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